RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNF706Q9Y5V0 76 aaPredicted RBP8.79□□□□□ -1
SHROOM1-208ENST00000617339 DNAH2Q9P225 4427 aa8.79□□□□□ -1
SHROOM1-208ENST00000617339 PRAC1Q96KF2 57 aa8.79□□□□□ -1
SHROOM1-208ENST00000617339 FRAS1Q86XX4 4008 aa8.78□□□□□ -1
SHROOM1-208ENST00000617339 RETNLBQ9BQ08 111 aa8.77□□□□□ -1.01
SHROOM1-208ENST00000617339 Q75L30 129 aa8.76□□□□□ -1.01
SHROOM1-208ENST00000617339 A8MWP4 228 aa8.76□□□□□ -1.01
SHROOM1-208ENST00000617339 LOC101927531A0A1B0GV80 90 aa8.76□□□□□ -1.01
SHROOM1-208ENST00000617339 DNAH11Q96DT5 4516 aa8.75□□□□□ -1.01
SHROOM1-208ENST00000617339 C7orf65Q6ZTY9 151 aa8.74□□□□□ -1.01
SHROOM1-208ENST00000617339 SPINK7P58062 85 aa8.74□□□□□ -1.01
SHROOM1-208ENST00000617339 Q6ZR54 194 aa8.74□□□□□ -1.01
SHROOM1-208ENST00000617339 A6NN06 94 aa8.73□□□□□ -1.01
SHROOM1-208ENST00000617339 ZNF861PO60384 105 aa8.73□□□□□ -1.01
SHROOM1-208ENST00000617339 H3BPC8 53 aa8.73□□□□□ -1.01
SHROOM1-208ENST00000617339 DNAH6Q9C0G6 4158 aa8.72□□□□□ -1.01
SHROOM1-208ENST00000617339 H3BS24 57 aa8.72□□□□□ -1.01
SHROOM1-208ENST00000617339 CDC42SE1Q9NRR8 79 aa8.71□□□□□ -1.01
SHROOM1-208ENST00000617339 IGLV7-46A0A075B6I9 117 aa8.7□□□□□ -1.02
SHROOM1-208ENST00000617339 MMP24-AS1A0A0U1RRL7 71 aa8.7□□□□□ -1.02
SHROOM1-208ENST00000617339 KRTAP10-1P60331 282 aa8.7□□□□□ -1.02
SHROOM1-208ENST00000617339 LINC00472Q9H8W2 130 aa8.7□□□□□ -1.02
SHROOM1-208ENST00000617339 IGLV7-43P04211 117 aa8.68□□□□□ -1.02
SHROOM1-208ENST00000617339 PLA2G1BP04054 148 aaKnown RBP8.67□□□□□ -1.02
SHROOM1-208ENST00000617339 IGLV8-61A0A075B6I0 122 aa8.65□□□□□ -1.02
SHROOM1-208ENST00000617339 DNAH17Q9UFH2 4485 aa8.65□□□□□ -1.02
SHROOM1-208ENST00000617339 HYDINQ4G0P3 5121 aa8.65□□□□□ -1.02
SHROOM1-208ENST00000617339 PRR26Q8N8Z3 221 aa8.65□□□□□ -1.03
SHROOM1-208ENST00000617339 HECTD4Q9Y4D8 3996 aa8.64□□□□□ -1.03
SHROOM1-208ENST00000617339 HRES1P13985 223 aa8.63□□□□□ -1.03
SHROOM1-208ENST00000617339 LINC01558Q9Y6Z2 57 aa8.63□□□□□ -1.03
SHROOM1-208ENST00000617339 C8orf87E5RJ46 101 aa8.62□□□□□ -1.03
SHROOM1-208ENST00000617339 KRTAP13-1Q8IUC0 172 aa8.62□□□□□ -1.03
SHROOM1-208ENST00000617339 PLAC8Q9NZF1 115 aa8.61□□□□□ -1.03
SHROOM1-208ENST00000617339 TYMSOSQ8TAI1 123 aa8.6□□□□□ -1.03
SHROOM1-208ENST00000617339 DNAH8Q96JB1 4490 aa8.6□□□□□ -1.03
SHROOM1-208ENST00000617339 DYNC2H1Q8NCM8 4307 aaKnown RBP8.6□□□□□ -1.03
SHROOM1-208ENST00000617339 LINC00313P59037 77 aa8.6□□□□□ -1.03
SHROOM1-208ENST00000617339 A0A087X002 238 aa8.58□□□□□ -1.04
SHROOM1-208ENST00000617339 NOTCH2NLQ7Z3S9 236 aa8.58□□□□□ -1.04
SHROOM1-208ENST00000617339 C8orf17Q9NRJ1 99 aa8.58□□□□□ -1.04
SHROOM1-208ENST00000617339 ADM2Q7Z4H4 148 aa8.58□□□□□ -1.04
SHROOM1-208ENST00000617339 LRP1BQ9NZR2 4599 aa8.57□□□□□ -1.04
SHROOM1-208ENST00000617339 SPRR1BP22528 89 aa8.57□□□□□ -1.04
SHROOM1-208ENST00000617339 TP53AIP1Q9HCN2 124 aa8.54□□□□□ -1.04
SHROOM1-208ENST00000617339 Q96NJ1 140 aa8.5□□□□□ -1.05
SHROOM1-208ENST00000617339 LINC01554Q52M75 96 aa8.49□□□□□ -1.05
SHROOM1-208ENST00000617339 MRPL34Q9BQ48 92 aaKnown RBP8.49□□□□□ -1.05
SHROOM1-208ENST00000617339 A0A1B0GU69 56 aa8.48□□□□□ -1.05
SHROOM1-208ENST00000617339 A0A1B0GVX0 72 aa8.48□□□□□ -1.05
SHROOM1-208ENST00000617339 DNAH5Q8TE73 4624 aa8.48□□□□□ -1.05
SHROOM1-208ENST00000617339 PKHD1P08F94 4074 aa8.47□□□□□ -1.05
SHROOM1-208ENST00000617339 FAM229AH3BQW9 127 aa8.47□□□□□ -1.05
SHROOM1-208ENST00000617339 Q5W150 140 aa8.45□□□□□ -1.06
SHROOM1-208ENST00000617339 SPINK1P00995 79 aa8.44□□□□□ -1.06
SHROOM1-208ENST00000617339 C9orf92A6NGG3 77 aa8.43□□□□□ -1.06
SHROOM1-208ENST00000617339 KRTAP21-3Q3LHN1 58 aa8.43□□□□□ -1.06
SHROOM1-208ENST00000617339 LINC00483Q53H64 154 aa8.43□□□□□ -1.06
SHROOM1-208ENST00000617339 IGKV2D-30A0A075B6S6 120 aa8.43□□□□□ -1.06
SHROOM1-208ENST00000617339 IGKV2-30P06310 120 aa8.43□□□□□ -1.06
SHROOM1-208ENST00000617339 FAT1Q14517 4588 aa8.43□□□□□ -1.06
SHROOM1-208ENST00000617339 SSBP3-AS1Q7Z2R9 100 aa8.41□□□□□ -1.06
SHROOM1-208ENST00000617339 ASB16-AS1Q495Z4 193 aa8.39□□□□□ -1.07
SHROOM1-208ENST00000617339 KRTAP13-2Q52LG2 175 aa8.39□□□□□ -1.07
SHROOM1-208ENST00000617339 LINC00304Q8N9R0 145 aa8.39□□□□□ -1.07
SHROOM1-208ENST00000617339 FAT2Q9NYQ8 4349 aa8.38□□□□□ -1.07
SHROOM1-208ENST00000617339 ACYP2P14621 99 aa8.38□□□□□ -1.07
SHROOM1-208ENST00000617339 CSAG1Q6PB30 78 aa8.37□□□□□ -1.07
SHROOM1-208ENST00000617339 VPS13BQ7Z7G8 4022 aa8.36□□□□□ -1.07
SHROOM1-208ENST00000617339 MIR22HGQ0VDD5 57 aa8.35□□□□□ -1.07
SHROOM1-208ENST00000617339 KMT2CQ8NEZ4 4911 aaKnown RBP8.31□□□□□ -1.08
SHROOM1-208ENST00000617339 ALMS1Q8TCU4 4167 aa8.31□□□□□ -1.08
SHROOM1-208ENST00000617339 SACSQ9NZJ4 4579 aa8.3□□□□□ -1.08
SHROOM1-208ENST00000617339 UQCR11O14957 56 aa8.29□□□□□ -1.08
SHROOM1-208ENST00000617339 PKD1P98161 4303 aa8.27□□□□□ -1.09
SHROOM1-208ENST00000617339 Q6ZSA8 131 aa8.27□□□□□ -1.09
SHROOM1-208ENST00000617339 KRTAP1-4P0C5Y4 121 aa8.24□□□□□ -1.09
SHROOM1-208ENST00000617339 DYNC1H1Q14204 4646 aaKnown RBP8.24□□□□□ -1.09
SHROOM1-208ENST00000617339 Q5VSD8 79 aa8.23□□□□□ -1.09
SHROOM1-208ENST00000617339 CRIPTQ9P021 101 aa8.22□□□□□ -1.09
SHROOM1-208ENST00000617339 DMAC1Q96GE9 116 aa8.22□□□□□ -1.09
SHROOM1-208ENST00000617339 SPATA8Q6RVD6 105 aa8.21□□□□□ -1.1
SHROOM1-208ENST00000617339 KRTAP13-3Q3SY46 172 aa8.2□□□□□ -1.1
SHROOM1-208ENST00000617339 J3QL48 77 aa8.1□□□□□ -1.11
SHROOM1-208ENST00000617339 Q8N1X5 172 aa8.1□□□□□ -1.11
SHROOM1-208ENST00000617339 LRP1Q07954 4544 aaKnown RBP8.1□□□□□ -1.11
SHROOM1-208ENST00000617339 APOBP04114 4563 aaKnown RBP8.08□□□□□ -1.12
SHROOM1-208ENST00000617339 MYCBP2O75592 4640 aa8.08□□□□□ -1.12
SHROOM1-208ENST00000617339 K7ERS5 55 aa8.02□□□□□ -1.13
SHROOM1-208ENST00000617339 SPINT4Q6UDR6 99 aa8.02□□□□□ -1.13
SHROOM1-208ENST00000617339 A0A1B0GVY2 172 aa8□□□□□ -1.13
SHROOM1-208ENST00000617339 RYR2Q92736 4967 aa8□□□□□ -1.13
SHROOM1-208ENST00000617339 KIAA1109Q2LD37 5005 aa7.99□□□□□ -1.13
SHROOM1-208ENST00000617339 RYR3Q15413 4870 aa7.97□□□□□ -1.13
SHROOM1-208ENST00000617339 KRTAP16-1A8MUX0 517 aa7.95□□□□□ -1.14
SHROOM1-208ENST00000617339 FAT3Q8TDW7 4589 aa7.93□□□□□ -1.14
SHROOM1-208ENST00000617339 H0YAA0 97 aa7.88□□□□□ -1.15
SHROOM1-208ENST00000617339 ROMO1P60602 79 aa7.87□□□□□ -1.15
SHROOM1-208ENST00000617339 KRTAP10-4P60372 401 aaPredicted RBP7.85□□□□□ -1.15
SHROOM1-208ENST00000617339 KRTAP25-1Q3LHN0 102 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms