RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 FAM229AH3BQW9 127 aa7.5□□□□□ -1.21
MSH6-213ENST00000614496 FLG2Q5D862 2391 aaPredicted RBP7.5□□□□□ -1.21
MSH6-213ENST00000614496 Q75L30 129 aa7.49□□□□□ -1.21
MSH6-213ENST00000614496 C8orf87E5RJ46 101 aa7.49□□□□□ -1.21
MSH6-213ENST00000614496 SSBP3-AS1Q7Z2R9 100 aa7.49□□□□□ -1.21
MSH6-213ENST00000614496 CDC42SE1Q9NRR8 79 aa7.48□□□□□ -1.21
MSH6-213ENST00000614496 SPINK7P58062 85 aa7.47□□□□□ -1.21
MSH6-213ENST00000614496 KTN1-AS1Q86SY8 53 aa7.47□□□□□ -1.21
MSH6-213ENST00000614496 Q96NJ1 140 aa7.46□□□□□ -1.22
MSH6-213ENST00000614496 PLAC8Q9NZF1 115 aa7.45□□□□□ -1.22
MSH6-213ENST00000614496 LINC01558Q9Y6Z2 57 aa7.45□□□□□ -1.22
MSH6-213ENST00000614496 Q6ZRN7 208 aaPredicted RBP7.45□□□□□ -1.22
MSH6-213ENST00000614496 RBM12B-AS1Q9P1G2 102 aa7.45□□□□□ -1.22
MSH6-213ENST00000614496 LCA10Q71F78 164 aa7.44□□□□□ -1.22
MSH6-213ENST00000614496 KRTAP13-1Q8IUC0 172 aa7.44□□□□□ -1.22
MSH6-213ENST00000614496 TYMSOSQ8TAI1 123 aa7.44□□□□□ -1.22
MSH6-213ENST00000614496 Q5W150 140 aa7.44□□□□□ -1.22
MSH6-213ENST00000614496 PLA2G1BP04054 148 aaKnown RBP7.43□□□□□ -1.22
MSH6-213ENST00000614496 LINC00483Q53H64 154 aa7.43□□□□□ -1.22
MSH6-213ENST00000614496 Q6ZR54 194 aa7.43□□□□□ -1.22
MSH6-213ENST00000614496 TGP01266 2768 aa7.39□□□□□ -1.23
MSH6-213ENST00000614496 Q8N1X5 172 aa7.37□□□□□ -1.23
MSH6-213ENST00000614496 UQCR11O14957 56 aa7.35□□□□□ -1.23
MSH6-213ENST00000614496 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
MSH6-213ENST00000614496 CSMD3Q7Z407 3707 aa7.35□□□□□ -1.23
MSH6-213ENST00000614496 KRTAP10-2P60368 255 aa7.34□□□□□ -1.23
MSH6-213ENST00000614496 COL7A1Q02388 2944 aa7.33□□□□□ -1.24
MSH6-213ENST00000614496 SMR3BP02814 79 aaPredicted RBP7.33□□□□□ -1.24
MSH6-213ENST00000614496 C9orf92A6NGG3 77 aa7.32□□□□□ -1.24
MSH6-213ENST00000614496 PRAC1Q96KF2 57 aa7.31□□□□□ -1.24
MSH6-213ENST00000614496 DMBT1Q9UGM3 2413 aaPredicted RBP7.31□□□□□ -1.24
MSH6-213ENST00000614496 LINC00304Q8N9R0 145 aa7.26□□□□□ -1.25
MSH6-213ENST00000614496 KRTAP10-1P60331 282 aa7.25□□□□□ -1.25
MSH6-213ENST00000614496 DMAC1Q96GE9 116 aa7.25□□□□□ -1.25
MSH6-213ENST00000614496 ASB16-AS1Q495Z4 193 aa7.23□□□□□ -1.25
MSH6-213ENST00000614496 K7ERS5 55 aa7.22□□□□□ -1.25
MSH6-213ENST00000614496 A6NN06 94 aa7.22□□□□□ -1.25
MSH6-213ENST00000614496 FBN3Q75N90 2809 aa7.22□□□□□ -1.25
MSH6-213ENST00000614496 KRTAP13-2Q52LG2 175 aa7.2□□□□□ -1.26
MSH6-213ENST00000614496 SPINT4Q6UDR6 99 aa7.18□□□□□ -1.26
MSH6-213ENST00000614496 LINC01554Q52M75 96 aa7.16□□□□□ -1.26
MSH6-213ENST00000614496 ADM2Q7Z4H4 148 aa7.14□□□□□ -1.27
MSH6-213ENST00000614496 MEGF8Q7Z7M0 2845 aa7.09□□□□□ -1.27
MSH6-213ENST00000614496 HUWE1Q7Z6Z7 4374 aaKnown RBP7.09□□□□□ -1.27
MSH6-213ENST00000614496 CSAG1Q6PB30 78 aa7.06□□□□□ -1.28
MSH6-213ENST00000614496 DNAH10Q8IVF4 4471 aa7.05□□□□□ -1.28
MSH6-213ENST00000614496 SPATA8Q6RVD6 105 aa7.05□□□□□ -1.28
MSH6-213ENST00000614496 A0A1B0GU33 70 aa7.04□□□□□ -1.28
MSH6-213ENST00000614496 KRTAP13-3Q3SY46 172 aa7.02□□□□□ -1.29
MSH6-213ENST00000614496 A0A0D9SG42 100 aa6.99□□□□□ -1.29
MSH6-213ENST00000614496 CRIPTQ9P021 101 aa6.98□□□□□ -1.29
MSH6-213ENST00000614496 KRTAP1-4P0C5Y4 121 aa6.98□□□□□ -1.29
MSH6-213ENST00000614496 ANK2Q01484 3957 aa6.98□□□□□ -1.29
MSH6-213ENST00000614496 KRTAP16-1A8MUX0 517 aa6.95□□□□□ -1.3
MSH6-213ENST00000614496 Q6ZSA8 131 aa6.92□□□□□ -1.3
MSH6-213ENST00000614496 H1FX-AS1Q4G0G2 97 aa6.86□□□□□ -1.31
MSH6-213ENST00000614496 A0A0A0MQY5 61 aa6.84□□□□□ -1.31
MSH6-213ENST00000614496 PLECQ15149 4684 aaKnown RBP6.84□□□□□ -1.31
MSH6-213ENST00000614496 DNAH9Q9NYC9 4486 aa6.83□□□□□ -1.32
MSH6-213ENST00000614496 LYSTQ99698 3801 aa6.82□□□□□ -1.32
MSH6-213ENST00000614496 COX6B2Q6YFQ2 88 aa6.8□□□□□ -1.32
MSH6-213ENST00000614496 A8MUU9 505 aa6.76□□□□□ -1.33
MSH6-213ENST00000614496 H0YAA0 97 aa6.76□□□□□ -1.33
MSH6-213ENST00000614496 RPS29P62273 56 aaKnown RBP6.76□□□□□ -1.33
MSH6-213ENST00000614496 C20orf166-AS1Q96NR2 134 aa6.74□□□□□ -1.33
MSH6-213ENST00000614496 DNAH1Q9P2D7 4330 aa6.74□□□□□ -1.33
MSH6-213ENST00000614496 S4R3F8 94 aa6.72□□□□□ -1.33
MSH6-213ENST00000614496 RPL37P61927 97 aaKnown RBP6.7□□□□□ -1.34
MSH6-213ENST00000614496 CMYA5Q8N3K9 4069 aa6.7□□□□□ -1.34
MSH6-213ENST00000614496 KRTAP25-1Q3LHN0 102 aa6.69□□□□□ -1.34
MSH6-213ENST00000614496 STARD9Q9P2P6 4700 aa6.68□□□□□ -1.34
MSH6-213ENST00000614496 Q5VSD8 79 aa6.67□□□□□ -1.34
MSH6-213ENST00000614496 ROMO1P60602 79 aa6.66□□□□□ -1.34
MSH6-213ENST00000614496 DNAH3Q8TD57 4116 aa6.64□□□□□ -1.35
MSH6-213ENST00000614496 DNAH11Q96DT5 4516 aa6.63□□□□□ -1.35
MSH6-213ENST00000614496 DNAH7Q8WXX0 4024 aa6.63□□□□□ -1.35
MSH6-213ENST00000614496 DNAH8Q96JB1 4490 aa6.63□□□□□ -1.35
MSH6-213ENST00000614496 KRTAP3-1Q9BYR8 98 aa6.61□□□□□ -1.35
MSH6-213ENST00000614496 LUZP6Q538Z0 58 aa6.61□□□□□ -1.35
MSH6-213ENST00000614496 NDUFAF8A1L188 74 aa6.6□□□□□ -1.35
MSH6-213ENST00000614496 KMT2AQ03164 3969 aa6.59□□□□□ -1.35
MSH6-213ENST00000614496 VPS13DQ5THJ4 4388 aa6.59□□□□□ -1.35
MSH6-213ENST00000614496 FRAS1Q86XX4 4008 aa6.58□□□□□ -1.36
MSH6-213ENST00000614496 PRKDCP78527 4128 aaKnown RBP6.55□□□□□ -1.36
MSH6-213ENST00000614496 DNAH17Q9UFH2 4485 aa6.54□□□□□ -1.36
MSH6-213ENST00000614496 LRP1BQ9NZR2 4599 aa6.49□□□□□ -1.37
MSH6-213ENST00000614496 C10orf95Q9H7T3 257 aa6.49□□□□□ -1.37
MSH6-213ENST00000614496 XP32Q5T750 250 aa6.48□□□□□ -1.37
MSH6-213ENST00000614496 DNAH2Q9P225 4427 aa6.46□□□□□ -1.38
MSH6-213ENST00000614496 P0C880 135 aa6.46□□□□□ -1.38
MSH6-213ENST00000614496 R4GN34 69 aa6.43□□□□□ -1.38
MSH6-213ENST00000614496 M0QZ58 72 aa6.43□□□□□ -1.38
MSH6-213ENST00000614496 A0A1B0GVY2 172 aa6.43□□□□□ -1.38
MSH6-213ENST00000614496 HECTD4Q9Y4D8 3996 aa6.42□□□□□ -1.38
MSH6-213ENST00000614496 J3QL48 77 aa6.42□□□□□ -1.38
MSH6-213ENST00000614496 DNAH6Q9C0G6 4158 aa6.41□□□□□ -1.38
MSH6-213ENST00000614496 KRTAP10-8P60410 259 aa6.39□□□□□ -1.39
MSH6-213ENST00000614496 DNHD1Q96M86 4753 aa6.38□□□□□ -1.39
MSH6-213ENST00000614496 DNAH5Q8TE73 4624 aa6.38□□□□□ -1.39
MSH6-213ENST00000614496 KRTAP13-4Q3LI77 160 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms