RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 A0A087X002 238 aa3.06□□□□□ -1.92
VRK3-226ENST00000602029 KRTAP4-16G5E9R7 235 aaPredicted RBP3.06□□□□□ -1.92
VRK3-226ENST00000602029 KLKP1Q107X0 134 aa3.06□□□□□ -1.92
VRK3-226ENST00000602029 ETDCA0A1B0GVM5 59 aa3.05□□□□□ -1.92
VRK3-226ENST00000602029 FAM19A1Q7Z5A9 133 aa3.05□□□□□ -1.92
VRK3-226ENST00000602029 KRTAP7-1Q8IUC3 87 aa3.05□□□□□ -1.92
VRK3-226ENST00000602029 SPRR4Q96PI1 79 aa3.05□□□□□ -1.92
VRK3-226ENST00000602029 A0A087WVE0 104 aa3.04□□□□□ -1.92
VRK3-226ENST00000602029 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.04□□□□□ -1.92
VRK3-226ENST00000602029 PRLHP81277 87 aa3.04□□□□□ -1.92
VRK3-226ENST00000602029 IGLV8-61A0A075B6I0 122 aa3.03□□□□□ -1.92
VRK3-226ENST00000602029 NREPQ16612 68 aa3.03□□□□□ -1.92
VRK3-226ENST00000602029 Q8NBF4 154 aa3.03□□□□□ -1.92
VRK3-226ENST00000602029 HIGD2AQ9BW72 106 aa3.03□□□□□ -1.92
VRK3-226ENST00000602029 F8WEM9 126 aa3.02□□□□□ -1.93
VRK3-226ENST00000602029 BPY2O14599 106 aa3.02□□□□□ -1.93
VRK3-226ENST00000602029 Q8N377 158 aa3.02□□□□□ -1.93
VRK3-226ENST00000602029 TPRXLQ17RH7 258 aa3.01□□□□□ -1.93
VRK3-226ENST00000602029 FAM229BQ4G0N7 80 aa3.01□□□□□ -1.93
VRK3-226ENST00000602029 KRTAP13-2Q52LG2 175 aa3.01□□□□□ -1.93
VRK3-226ENST00000602029 Q9BRP9 147 aa3.01□□□□□ -1.93
VRK3-226ENST00000602029 FAM236DA0A1B0GTK5 79 aa3□□□□□ -1.93
VRK3-226ENST00000602029 IGKV4-1P06312 121 aa3□□□□□ -1.93
VRK3-226ENST00000602029 FAM236CP0DP71 79 aa3□□□□□ -1.93
VRK3-226ENST00000602029 SPRR1BP22528 89 aa3□□□□□ -1.93
VRK3-226ENST00000602029 C20orf197Q8N268 126 aa3□□□□□ -1.93
VRK3-226ENST00000602029 SERP1Q9Y6X1 66 aa3□□□□□ -1.93
VRK3-226ENST00000602029 H7BZZ5 65 aa2.99□□□□□ -1.93
VRK3-226ENST00000602029 SPAG11AQ6PDA7 123 aa2.99□□□□□ -1.93
VRK3-226ENST00000602029 OCR1Q9BZK8 76 aa2.99□□□□□ -1.93
VRK3-226ENST00000602029 ZNF706Q9Y5V0 76 aaPredicted RBP2.99□□□□□ -1.93
VRK3-226ENST00000602029 SEC61BP60468 96 aaKnown RBP2.98□□□□□ -1.93
VRK3-226ENST00000602029 LCE3BQ5TA77 95 aa2.98□□□□□ -1.93
VRK3-226ENST00000602029 SSPOA2VEC9 5147 aa2.98□□□□□ -1.93
VRK3-226ENST00000602029 IGLV9-49A0A0B4J1Y8 123 aa2.97□□□□□ -1.93
VRK3-226ENST00000602029 A0A1W2PNM2 257 aa2.97□□□□□ -1.93
VRK3-226ENST00000602029 H3BPC8 53 aa2.97□□□□□ -1.93
VRK3-226ENST00000602029 NDUFB1O75438 58 aa2.97□□□□□ -1.93
VRK3-226ENST00000602029 FP248Q71RG6 208 aaPredicted RBP2.97□□□□□ -1.93
VRK3-226ENST00000602029 TMEM254Q8TBM7 123 aa2.97□□□□□ -1.93
VRK3-226ENST00000602029 C5orf47Q569G3 176 aa2.96□□□□□ -1.94
VRK3-226ENST00000602029 SMIM29Q86T20 159 aa2.96□□□□□ -1.94
VRK3-226ENST00000602029 KRTAP13-1Q8IUC0 172 aa2.96□□□□□ -1.94
VRK3-226ENST00000602029 DEFB105AQ8NG35 78 aa2.96□□□□□ -1.94
VRK3-226ENST00000602029 KRTAP4-12Q9BQ66 201 aa2.96□□□□□ -1.94
VRK3-226ENST00000602029 SMIM26A0A096LP01 95 aa2.95□□□□□ -1.94
VRK3-226ENST00000602029 CYSTM1Q9H1C7 97 aa2.95□□□□□ -1.94
VRK3-226ENST00000602029 HCG22E2RYF7 251 aa2.94□□□□□ -1.94
VRK3-226ENST00000602029 SPINK1P00995 79 aa2.94□□□□□ -1.94
VRK3-226ENST00000602029 MOBPQ13875 183 aa2.94□□□□□ -1.94
VRK3-226ENST00000602029 ASB16-AS1Q495Z4 193 aa2.94□□□□□ -1.94
VRK3-226ENST00000602029 IGFL1Q6UW32 110 aa2.94□□□□□ -1.94
VRK3-226ENST00000602029 M0R2T5 61 aa2.93□□□□□ -1.94
VRK3-226ENST00000602029 DSCR10P59022 87 aa2.93□□□□□ -1.94
VRK3-226ENST00000602029 KRTAP13-3Q3SY46 172 aa2.93□□□□□ -1.94
VRK3-226ENST00000602029 ST20-AS1Q8NBB2 130 aa2.93□□□□□ -1.94
VRK3-226ENST00000602029 MP68P56378 58 aa2.92□□□□□ -1.94
VRK3-226ENST00000602029 LINC00483Q53H64 154 aa2.92□□□□□ -1.94
VRK3-226ENST00000602029 KRTAP19-1Q8IUB9 90 aa2.92□□□□□ -1.94
VRK3-226ENST00000602029 SYNE2Q8WXH0 6885 aaKnown RBP2.92□□□□□ -1.94
VRK3-226ENST00000602029 USH2AO75445 5202 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 hDV103S1A0JD37 113 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 A8MWP4 228 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 K7EQZ3 153 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 HRCT1Q6UXD1 115 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 COX6B2Q6YFQ2 88 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 SPANXA2-OT1Q8N9U9 137 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 ZCCHC13Q8WW36 166 aaKnown RBP2.91□□□□□ -1.94
VRK3-226ENST00000602029 CYP4F30PQ9H0H9 118 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 TP53AIP1Q9HCN2 124 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 SNURFQ9Y675 71 aa2.91□□□□□ -1.94
VRK3-226ENST00000602029 FCGBPQ9Y6R7 5405 aaPredicted RBP2.91□□□□□ -1.94
VRK3-226ENST00000602029 A0A087WSZ3 146 aa2.9□□□□□ -1.95
VRK3-226ENST00000602029 C9orf92A6NGG3 77 aa2.9□□□□□ -1.95
VRK3-226ENST00000602029 PRR15Q8IV56 129 aa2.9□□□□□ -1.95
VRK3-226ENST00000602029 Q8N9L7 120 aa2.9□□□□□ -1.95
VRK3-226ENST00000602029 LINC00472Q9H8W2 130 aa2.9□□□□□ -1.95
VRK3-226ENST00000602029 PCOTHQ58A44 107 aa2.89□□□□□ -1.95
VRK3-226ENST00000602029 Q5XG85 94 aa2.89□□□□□ -1.95
VRK3-226ENST00000602029 KRTAP4-1Q9BYQ7 146 aa2.89□□□□□ -1.95
VRK3-226ENST00000602029 V9GYY9 64 aa2.89□□□□□ -1.95
VRK3-226ENST00000602029 CD164Q04900 197 aa2.88□□□□□ -1.95
VRK3-226ENST00000602029 CASC2Q6XLA1 102 aa2.88□□□□□ -1.95
VRK3-226ENST00000602029 SSBP3-AS1Q7Z2R9 100 aa2.88□□□□□ -1.95
VRK3-226ENST00000602029 LIMD2Q9BT23 127 aa2.88□□□□□ -1.95
VRK3-226ENST00000602029 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
VRK3-226ENST00000602029 KRTAP9-4Q9BYQ2 154 aa2.88□□□□□ -1.95
VRK3-226ENST00000602029 TRAV22A0A0B4J277 110 aa2.87□□□□□ -1.95
VRK3-226ENST00000602029 C1orf195Q5TG92 126 aa2.87□□□□□ -1.95
VRK3-226ENST00000602029 RPS29P62273 56 aaKnown RBP2.86□□□□□ -1.95
VRK3-226ENST00000602029 Q1T7F1 81 aa2.86□□□□□ -1.95
VRK3-226ENST00000602029 MACF1Q9UPN3 7388 aaKnown RBP2.86□□□□□ -1.95
VRK3-226ENST00000602029 FLGP20930 4061 aaPredicted RBP2.85□□□□□ -1.95
VRK3-226ENST00000602029 MMP24-AS1A0A0U1RRL7 71 aa2.85□□□□□ -1.95
VRK3-226ENST00000602029 H0Y9P7 68 aa2.85□□□□□ -1.95
VRK3-226ENST00000602029 PRO0628Q9UI54 55 aa2.85□□□□□ -1.95
VRK3-226ENST00000602029 KRTAP4-8A0A0G2JLE6 195 aa2.84□□□□□ -1.95
VRK3-226ENST00000602029 A0A1B0GVX0 72 aa2.84□□□□□ -1.95
VRK3-226ENST00000602029 Q96NJ1 140 aa2.84□□□□□ -1.95
VRK3-226ENST00000602029 C8orf87E5RJ46 101 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms