RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 MOBPQ13875 183 aa5.01□□□□□ -1.61
TRIM28-214ENST00000600840 NREPQ16612 68 aa5.01□□□□□ -1.61
TRIM28-214ENST00000600840 A0A0G2JQZ4 141 aa5□□□□□ -1.61
TRIM28-214ENST00000600840 Q8NBF4 154 aa5□□□□□ -1.61
TRIM28-214ENST00000600840 TMEM258P61165 79 aa4.99□□□□□ -1.61
TRIM28-214ENST00000600840 FSIP2Q5CZC0 6907 aa4.99□□□□□ -1.61
TRIM28-214ENST00000600840 A0A087WVE0 104 aa4.98□□□□□ -1.61
TRIM28-214ENST00000600840 BPY2O14599 106 aa4.98□□□□□ -1.61
TRIM28-214ENST00000600840 LINC00304Q8N9R0 145 aa4.98□□□□□ -1.61
TRIM28-214ENST00000600840 SPAG11AQ6PDA7 123 aa4.97□□□□□ -1.61
TRIM28-214ENST00000600840 IGFL1Q6UW32 110 aa4.97□□□□□ -1.61
TRIM28-214ENST00000600840 NDUFC1O43677 76 aa4.96□□□□□ -1.62
TRIM28-214ENST00000600840 CD164Q04900 197 aa4.96□□□□□ -1.62
TRIM28-214ENST00000600840 SS18L2Q9UHA2 77 aa4.96□□□□□ -1.62
TRIM28-214ENST00000600840 SPINK1P00995 79 aa4.95□□□□□ -1.62
TRIM28-214ENST00000600840 RPS29P62273 56 aaKnown RBP4.95□□□□□ -1.62
TRIM28-214ENST00000600840 A0A1W2PNM2 257 aa4.94□□□□□ -1.62
TRIM28-214ENST00000600840 RPS28P62857 69 aaKnown RBP4.94□□□□□ -1.62
TRIM28-214ENST00000600840 Q5XG85 94 aa4.94□□□□□ -1.62
TRIM28-214ENST00000600840 MUC17Q685J3 4493 aa4.94□□□□□ -1.62
TRIM28-214ENST00000600840 KLKP1Q107X0 134 aa4.93□□□□□ -1.62
TRIM28-214ENST00000600840 IGLV7-46A0A075B6I9 117 aa4.92□□□□□ -1.62
TRIM28-214ENST00000600840 IGKV4-1P06312 121 aa4.92□□□□□ -1.62
TRIM28-214ENST00000600840 ATP5EP56381 51 aaPredicted RBP4.92□□□□□ -1.62
TRIM28-214ENST00000600840 J3KT08 172 aa4.91□□□□□ -1.62
TRIM28-214ENST00000600840 TPRXLQ17RH7 258 aa4.91□□□□□ -1.62
TRIM28-214ENST00000600840 HRCT1Q6UXD1 115 aa4.91□□□□□ -1.62
TRIM28-214ENST00000600840 C4orf48Q5BLP8 95 aa4.9□□□□□ -1.63
TRIM28-214ENST00000600840 ASB16-AS1Q495Z4 193 aa4.89□□□□□ -1.63
TRIM28-214ENST00000600840 C20orf197Q8N268 126 aa4.88□□□□□ -1.63
TRIM28-214ENST00000600840 C1orf195Q5TG92 126 aa4.87□□□□□ -1.63
TRIM28-214ENST00000600840 KRTAP4-1Q9BYQ7 146 aa4.87□□□□□ -1.63
TRIM28-214ENST00000600840 OCR1Q9BZK8 76 aa4.86□□□□□ -1.63
TRIM28-214ENST00000600840 FAM236DA0A1B0GTK5 79 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 KRTAP9-7A8MTY7 169 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 FAM236CP0DP71 79 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 KRTAP13-3Q3SY46 172 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 TMEM254Q8TBM7 123 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 Q96NJ1 140 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 LIMD2Q9BT23 127 aa4.85□□□□□ -1.63
TRIM28-214ENST00000600840 A0A087WSZ3 146 aa4.84□□□□□ -1.63
TRIM28-214ENST00000600840 HCG22E2RYF7 251 aa4.84□□□□□ -1.63
TRIM28-214ENST00000600840 DSCR10P59022 87 aa4.84□□□□□ -1.63
TRIM28-214ENST00000600840 C5orf47Q569G3 176 aa4.84□□□□□ -1.63
TRIM28-214ENST00000600840 H7BZZ5 65 aa4.83□□□□□ -1.64
TRIM28-214ENST00000600840 FP248Q71RG6 208 aaPredicted RBP4.83□□□□□ -1.64
TRIM28-214ENST00000600840 H3BPC8 53 aa4.82□□□□□ -1.64
TRIM28-214ENST00000600840 NDUFB1O75438 58 aa4.82□□□□□ -1.64
TRIM28-214ENST00000600840 LINC00472Q9H8W2 130 aa4.82□□□□□ -1.64
TRIM28-214ENST00000600840 SERP1Q9Y6X1 66 aa4.82□□□□□ -1.64
TRIM28-214ENST00000600840 A8MWP4 228 aa4.81□□□□□ -1.64
TRIM28-214ENST00000600840 Q8N9L7 120 aa4.81□□□□□ -1.64
TRIM28-214ENST00000600840 K7EQZ3 153 aa4.8□□□□□ -1.64
TRIM28-214ENST00000600840 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.79□□□□□ -1.64
TRIM28-214ENST00000600840 PRR15Q8IV56 129 aa4.79□□□□□ -1.64
TRIM28-214ENST00000600840 CYSTM1Q9H1C7 97 aa4.79□□□□□ -1.64
TRIM28-214ENST00000600840 MP68P56378 58 aa4.78□□□□□ -1.64
TRIM28-214ENST00000600840 SNURFQ9Y675 71 aa4.77□□□□□ -1.65
TRIM28-214ENST00000600840 LCE2CQ5TA81 110 aa4.76□□□□□ -1.65
TRIM28-214ENST00000600840 CASC2Q6XLA1 102 aa4.76□□□□□ -1.65
TRIM28-214ENST00000600840 TP53AIP1Q9HCN2 124 aa4.76□□□□□ -1.65
TRIM28-214ENST00000600840 DEFB116Q30KQ4 102 aa4.75□□□□□ -1.65
TRIM28-214ENST00000600840 hDV103S1A0JD37 113 aa4.74□□□□□ -1.65
TRIM28-214ENST00000600840 XP32Q5T750 250 aa4.74□□□□□ -1.65
TRIM28-214ENST00000600840 SMIM26A0A096LP01 95 aa4.73□□□□□ -1.65
TRIM28-214ENST00000600840 ZCCHC13Q8WW36 166 aaKnown RBP4.73□□□□□ -1.65
TRIM28-214ENST00000600840 SEC61BP60468 96 aaKnown RBP4.72□□□□□ -1.65
TRIM28-214ENST00000600840 MT1HP80294 61 aa4.72□□□□□ -1.65
TRIM28-214ENST00000600840 KRTAP19-2Q3LHN2 52 aa4.72□□□□□ -1.65
TRIM28-214ENST00000600840 NOTCH2NLQ7Z3S9 236 aa4.72□□□□□ -1.65
TRIM28-214ENST00000600840 WFDC13Q8IUB5 93 aa4.71□□□□□ -1.66
TRIM28-214ENST00000600840 SPANXA2-OT1Q8N9U9 137 aa4.71□□□□□ -1.66
TRIM28-214ENST00000600840 MMP24-AS1A0A0U1RRL7 71 aa4.7□□□□□ -1.66
TRIM28-214ENST00000600840 A0A1B0GVX0 72 aa4.7□□□□□ -1.66
TRIM28-214ENST00000600840 C9orf92A6NGG3 77 aa4.7□□□□□ -1.66
TRIM28-214ENST00000600840 KRTAP16-1A8MUX0 517 aa4.7□□□□□ -1.66
TRIM28-214ENST00000600840 LORP23490 312 aaPredicted RBP4.7□□□□□ -1.66
TRIM28-214ENST00000600840 CYP4F30PQ9H0H9 118 aa4.7□□□□□ -1.66
TRIM28-214ENST00000600840 TRAV22A0A0B4J277 110 aa4.69□□□□□ -1.66
TRIM28-214ENST00000600840 C8orf87E5RJ46 101 aa4.69□□□□□ -1.66
TRIM28-214ENST00000600840 SVIPQ8NHG7 77 aa4.69□□□□□ -1.66
TRIM28-214ENST00000600840 H0Y9P7 68 aa4.68□□□□□ -1.66
TRIM28-214ENST00000600840 KRTAP10-6P60371 365 aaPredicted RBP4.68□□□□□ -1.66
TRIM28-214ENST00000600840 PCOTHQ58A44 107 aa4.68□□□□□ -1.66
TRIM28-214ENST00000600840 C8orf17Q9NRJ1 99 aa4.68□□□□□ -1.66
TRIM28-214ENST00000600840 LINC00313P59037 77 aa4.66□□□□□ -1.66
TRIM28-214ENST00000600840 LINC00208Q96KT6 92 aa4.66□□□□□ -1.66
TRIM28-214ENST00000600840 C20orf166-AS1Q96NR2 134 aa4.66□□□□□ -1.66
TRIM28-214ENST00000600840 IGHV6-1A0A0B4J1U7 121 aa4.65□□□□□ -1.67
TRIM28-214ENST00000600840 A8MUU9 505 aa4.65□□□□□ -1.67
TRIM28-214ENST00000600840 MRPL34Q9BQ48 92 aaKnown RBP4.65□□□□□ -1.67
TRIM28-214ENST00000600840 RPL37P61927 97 aaKnown RBP4.64□□□□□ -1.67
TRIM28-214ENST00000600840 C1orf64Q8NEQ6 169 aa4.64□□□□□ -1.67
TRIM28-214ENST00000600840 Q75L30 129 aa4.63□□□□□ -1.67
TRIM28-214ENST00000600840 V9GYY9 64 aa4.63□□□□□ -1.67
TRIM28-214ENST00000600840 LOC101927531A0A1B0GV80 90 aa4.61□□□□□ -1.67
TRIM28-214ENST00000600840 Q8N9P0 234 aaPredicted RBP4.61□□□□□ -1.67
TRIM28-214ENST00000600840 NDUFS5O43920 106 aa4.59□□□□□ -1.67
TRIM28-214ENST00000600840 Q1T7F1 81 aa4.58□□□□□ -1.68
TRIM28-214ENST00000600840 M0R2T5 61 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms