RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 DEFB116Q30KQ4 102 aa8.14□□□□□ -1.11
LIG1-219ENST00000600055 FAT4Q6V0I7 4981 aa8.13□□□□□ -1.11
LIG1-219ENST00000600055 SIGMAR1Q99720 223 aa8.13□□□□□ -1.11
LIG1-219ENST00000600055 IGKV4-1P06312 121 aa8.12□□□□□ -1.11
LIG1-219ENST00000600055 LINC00472Q9H8W2 130 aa8.12□□□□□ -1.11
LIG1-219ENST00000600055 DSCR10P59022 87 aa8.1□□□□□ -1.11
LIG1-219ENST00000600055 NREPQ16612 68 aa8.1□□□□□ -1.11
LIG1-219ENST00000600055 J3KT08 172 aa8.08□□□□□ -1.12
LIG1-219ENST00000600055 Q75L30 129 aa8.08□□□□□ -1.12
LIG1-219ENST00000600055 ACYP1P07311 99 aa8.07□□□□□ -1.12
LIG1-219ENST00000600055 J3QR89 54 aa8.06□□□□□ -1.12
LIG1-219ENST00000600055 LCE2AQ5TA79 106 aaPredicted RBP8.06□□□□□ -1.12
LIG1-219ENST00000600055 UBL5Q9BZL1 73 aa8.06□□□□□ -1.12
LIG1-219ENST00000600055 NOTCH2NLQ7Z3S9 236 aa8.05□□□□□ -1.12
LIG1-219ENST00000600055 LINC00313P59037 77 aa8.03□□□□□ -1.12
LIG1-219ENST00000600055 C20orf166-AS1Q96NR2 134 aa8.03□□□□□ -1.12
LIG1-219ENST00000600055 IGHV6-1A0A0B4J1U7 121 aa8.02□□□□□ -1.13
LIG1-219ENST00000600055 A8MUU9 505 aa8.02□□□□□ -1.13
LIG1-219ENST00000600055 ATP11AUNQ6ZP68 121 aa8.02□□□□□ -1.13
LIG1-219ENST00000600055 FAM240AA0A1B0GVK7 77 aa8.01□□□□□ -1.13
LIG1-219ENST00000600055 NDUFB1O75438 58 aa8.01□□□□□ -1.13
LIG1-219ENST00000600055 KRTAP16-1A8MUX0 517 aa8□□□□□ -1.13
LIG1-219ENST00000600055 KRTAP19-2Q3LHN2 52 aa8□□□□□ -1.13
LIG1-219ENST00000600055 A0A1B0GVX0 72 aa7.98□□□□□ -1.13
LIG1-219ENST00000600055 BPY2O14599 106 aa7.98□□□□□ -1.13
LIG1-219ENST00000600055 LCE2CQ5TA81 110 aa7.98□□□□□ -1.13
LIG1-219ENST00000600055 Q6ZVQ6 151 aa7.98□□□□□ -1.13
LIG1-219ENST00000600055 LINC00846Q9NV44 126 aa7.98□□□□□ -1.13
LIG1-219ENST00000600055 A8MWP4 228 aa7.94□□□□□ -1.14
LIG1-219ENST00000600055 C8orf87E5RJ46 101 aa7.94□□□□□ -1.14
LIG1-219ENST00000600055 K7ERU9 68 aa7.92□□□□□ -1.14
LIG1-219ENST00000600055 IGKV3D-7A0A0C4DH55 119 aa7.9□□□□□ -1.14
LIG1-219ENST00000600055 CXCL6P80162 114 aa7.89□□□□□ -1.15
LIG1-219ENST00000600055 PRR15Q8IV56 129 aa7.89□□□□□ -1.15
LIG1-219ENST00000600055 LCE2BO14633 110 aa7.88□□□□□ -1.15
LIG1-219ENST00000600055 ATP5EP2Q5VTU8 51 aa7.88□□□□□ -1.15
LIG1-219ENST00000600055 C8orf17Q9NRJ1 99 aa7.87□□□□□ -1.15
LIG1-219ENST00000600055 MT1HP80294 61 aa7.86□□□□□ -1.15
LIG1-219ENST00000600055 LINC00643Q86TS7 51 aa7.86□□□□□ -1.15
LIG1-219ENST00000600055 COX6B2Q6YFQ2 88 aa7.84□□□□□ -1.15
LIG1-219ENST00000600055 K7EQZ3 153 aa7.82□□□□□ -1.16
LIG1-219ENST00000600055 Q8N9P0 234 aaPredicted RBP7.81□□□□□ -1.16
LIG1-219ENST00000600055 MMP24-AS1A0A0U1RRL7 71 aa7.79□□□□□ -1.16
LIG1-219ENST00000600055 ZCCHC13Q8WW36 166 aaKnown RBP7.78□□□□□ -1.16
LIG1-219ENST00000600055 hDV103S1A0JD37 113 aa7.77□□□□□ -1.17
LIG1-219ENST00000600055 Q8N9L7 120 aa7.76□□□□□ -1.17
LIG1-219ENST00000600055 TMEM254Q8TBM7 123 aa7.76□□□□□ -1.17
LIG1-219ENST00000600055 CASC2Q6XLA1 102 aa7.75□□□□□ -1.17
LIG1-219ENST00000600055 HCG22E2RYF7 251 aa7.74□□□□□ -1.17
LIG1-219ENST00000600055 HIST1H4AP62805 103 aaKnown RBP7.74□□□□□ -1.17
LIG1-219ENST00000600055 MRPL34Q9BQ48 92 aaKnown RBP7.74□□□□□ -1.17
LIG1-219ENST00000600055 FLGP20930 4061 aaPredicted RBP7.74□□□□□ -1.17
LIG1-219ENST00000600055 HRES1P13985 223 aa7.73□□□□□ -1.17
LIG1-219ENST00000600055 M0R2T5 61 aa7.71□□□□□ -1.18
LIG1-219ENST00000600055 WFDC13Q8IUB5 93 aa7.71□□□□□ -1.18
LIG1-219ENST00000600055 NDUFS5O43920 106 aa7.69□□□□□ -1.18
LIG1-219ENST00000600055 MPLKIPQ8TAP9 179 aa7.69□□□□□ -1.18
LIG1-219ENST00000600055 KRTAP9-2Q9BYQ4 174 aa7.69□□□□□ -1.18
LIG1-219ENST00000600055 SPINK7P58062 85 aa7.68□□□□□ -1.18
LIG1-219ENST00000600055 KRTAP10-6P60371 365 aaPredicted RBP7.68□□□□□ -1.18
LIG1-219ENST00000600055 IMUPQ9GZP8 106 aa7.67□□□□□ -1.18
LIG1-219ENST00000600055 LORP23490 312 aaPredicted RBP7.66□□□□□ -1.18
LIG1-219ENST00000600055 FAM236DA0A1B0GTK5 79 aa7.65□□□□□ -1.18
LIG1-219ENST00000600055 FAM236CP0DP71 79 aa7.65□□□□□ -1.18
LIG1-219ENST00000600055 RBM12B-AS1Q9P1G2 102 aa7.65□□□□□ -1.18
LIG1-219ENST00000600055 TP53AIP1Q9HCN2 124 aa7.64□□□□□ -1.19
LIG1-219ENST00000600055 Q5W150 140 aa7.6□□□□□ -1.19
LIG1-219ENST00000600055 A0A087WVE0 104 aa7.58□□□□□ -1.2
LIG1-219ENST00000600055 MT-ATP8P03928 68 aa7.58□□□□□ -1.2
LIG1-219ENST00000600055 SCGB1A1P11684 91 aa7.57□□□□□ -1.2
LIG1-219ENST00000600055 IGKV2D-30A0A075B6S6 120 aa7.53□□□□□ -1.2
LIG1-219ENST00000600055 IGKV2-30P06310 120 aa7.53□□□□□ -1.2
LIG1-219ENST00000600055 UQCRQO14949 82 aa7.52□□□□□ -1.21
LIG1-219ENST00000600055 SMIM20Q8N5G0 67 aa7.49□□□□□ -1.21
LIG1-219ENST00000600055 C7orf65Q6ZTY9 151 aa7.48□□□□□ -1.21
LIG1-219ENST00000600055 TRAV22A0A0B4J277 110 aa7.47□□□□□ -1.21
LIG1-219ENST00000600055 ATOX1O00244 68 aa7.47□□□□□ -1.21
LIG1-219ENST00000600055 KRTAP9-8Q9BYQ0 159 aa7.47□□□□□ -1.21
LIG1-219ENST00000600055 FAM236AA0A1B0GUQ0 79 aa7.45□□□□□ -1.22
LIG1-219ENST00000600055 FAM236BA0A1B0GV22 79 aa7.45□□□□□ -1.22
LIG1-219ENST00000600055 C5orf47Q569G3 176 aa7.44□□□□□ -1.22
LIG1-219ENST00000600055 MP68P56378 58 aa7.43□□□□□ -1.22
LIG1-219ENST00000600055 OCR1Q9BZK8 76 aa7.42□□□□□ -1.22
LIG1-219ENST00000600055 LOC101927531A0A1B0GV80 90 aa7.41□□□□□ -1.22
LIG1-219ENST00000600055 H0Y9P7 68 aa7.4□□□□□ -1.22
LIG1-219ENST00000600055 H3BPC8 53 aa7.39□□□□□ -1.23
LIG1-219ENST00000600055 MT2AP02795 61 aa7.39□□□□□ -1.23
LIG1-219ENST00000600055 C4orf26Q17RF5 130 aa7.38□□□□□ -1.23
LIG1-219ENST00000600055 H1FX-AS1Q4G0G2 97 aa7.38□□□□□ -1.23
LIG1-219ENST00000600055 TRAV7A0A075B6U4 112 aa7.37□□□□□ -1.23
LIG1-219ENST00000600055 H3BS24 57 aa7.37□□□□□ -1.23
LIG1-219ENST00000600055 KRTAP9-6A0A140TA67 174 aa7.36□□□□□ -1.23
LIG1-219ENST00000600055 MT1FP04733 61 aa7.34□□□□□ -1.23
LIG1-219ENST00000600055 C1orf64Q8NEQ6 169 aa7.34□□□□□ -1.23
LIG1-219ENST00000600055 LINC00208Q96KT6 92 aa7.32□□□□□ -1.24
LIG1-219ENST00000600055 CYP4F30PQ9H0H9 118 aa7.32□□□□□ -1.24
LIG1-219ENST00000600055 SERP2Q8N6R1 65 aa7.3□□□□□ -1.24
LIG1-219ENST00000600055 KRTAP10-10P60014 251 aa7.29□□□□□ -1.24
LIG1-219ENST00000600055 KRTAP3-1Q9BYR8 98 aa7.29□□□□□ -1.24
LIG1-219ENST00000600055 CRCT1Q9UGL9 99 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms