RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 LINC00472Q9H8W2 130 aa7.14□□□□□ -1.27
UPF1-208ENST00000600012 ASB16-AS1Q495Z4 193 aa7.13□□□□□ -1.27
UPF1-208ENST00000600012 BPY2O14599 106 aa7.12□□□□□ -1.27
UPF1-208ENST00000600012 SIGMAR1Q99720 223 aa7.12□□□□□ -1.27
UPF1-208ENST00000600012 MUC17Q685J3 4493 aa7.11□□□□□ -1.27
UPF1-208ENST00000600012 KRTAP9-6A0A140TA67 174 aa7.11□□□□□ -1.27
UPF1-208ENST00000600012 IGKV4-1P06312 121 aa7.11□□□□□ -1.27
UPF1-208ENST00000600012 C1orf195Q5TG92 126 aa7.11□□□□□ -1.27
UPF1-208ENST00000600012 MT-ATP8P03928 68 aa7.1□□□□□ -1.27
UPF1-208ENST00000600012 DSCR10P59022 87 aa7.09□□□□□ -1.27
UPF1-208ENST00000600012 ATP5EP2Q5VTU8 51 aa7.09□□□□□ -1.27
UPF1-208ENST00000600012 CXCL6P80162 114 aa7.08□□□□□ -1.28
UPF1-208ENST00000600012 FP248Q71RG6 208 aaPredicted RBP7.08□□□□□ -1.28
UPF1-208ENST00000600012 Q8N9L7 120 aa7.08□□□□□ -1.28
UPF1-208ENST00000600012 J3KT08 172 aa7.07□□□□□ -1.28
UPF1-208ENST00000600012 K7EQZ3 153 aa7.06□□□□□ -1.28
UPF1-208ENST00000600012 A8MWP4 228 aa7.04□□□□□ -1.28
UPF1-208ENST00000600012 HIST1H4AP62805 103 aaKnown RBP7.03□□□□□ -1.28
UPF1-208ENST00000600012 KRTAP13-3Q3SY46 172 aa7.03□□□□□ -1.28
UPF1-208ENST00000600012 A0A087WVE0 104 aa7.01□□□□□ -1.29
UPF1-208ENST00000600012 A0A1B0GVX0 72 aa7.01□□□□□ -1.29
UPF1-208ENST00000600012 NDUFB1O75438 58 aa7.01□□□□□ -1.29
UPF1-208ENST00000600012 PRR15Q8IV56 129 aa7.01□□□□□ -1.29
UPF1-208ENST00000600012 IGHV6-1A0A0B4J1U7 121 aa7□□□□□ -1.29
UPF1-208ENST00000600012 SEC61BP60468 96 aaKnown RBP6.98□□□□□ -1.29
UPF1-208ENST00000600012 IMUPQ9GZP8 106 aa6.97□□□□□ -1.29
UPF1-208ENST00000600012 MMP24-AS1A0A0U1RRL7 71 aa6.96□□□□□ -1.3
UPF1-208ENST00000600012 NOTCH2NLQ7Z3S9 236 aa6.96□□□□□ -1.3
UPF1-208ENST00000600012 C8orf17Q9NRJ1 99 aa6.96□□□□□ -1.3
UPF1-208ENST00000600012 WFDC13Q8IUB5 93 aa6.95□□□□□ -1.3
UPF1-208ENST00000600012 KRTAP4-1Q9BYQ7 146 aa6.94□□□□□ -1.3
UPF1-208ENST00000600012 C9orf92A6NGG3 77 aa6.93□□□□□ -1.3
UPF1-208ENST00000600012 HCG22E2RYF7 251 aa6.93□□□□□ -1.3
UPF1-208ENST00000600012 C8orf87E5RJ46 101 aa6.93□□□□□ -1.3
UPF1-208ENST00000600012 LINC00313P59037 77 aa6.92□□□□□ -1.3
UPF1-208ENST00000600012 LCE2DQ5TA82 110 aaPredicted RBP6.92□□□□□ -1.3
UPF1-208ENST00000600012 FAM236AA0A1B0GUQ0 79 aa6.91□□□□□ -1.3
UPF1-208ENST00000600012 FAM236BA0A1B0GV22 79 aa6.91□□□□□ -1.3
UPF1-208ENST00000600012 CASC2Q6XLA1 102 aa6.91□□□□□ -1.3
UPF1-208ENST00000600012 hDV103S1A0JD37 113 aa6.89□□□□□ -1.31
UPF1-208ENST00000600012 XP32Q5T750 250 aa6.89□□□□□ -1.31
UPF1-208ENST00000600012 KRTAP16-1A8MUX0 517 aa6.88□□□□□ -1.31
UPF1-208ENST00000600012 TMEM254Q8TBM7 123 aa6.87□□□□□ -1.31
UPF1-208ENST00000600012 MRPL34Q9BQ48 92 aaKnown RBP6.86□□□□□ -1.31
UPF1-208ENST00000600012 CRCT1Q9UGL9 99 aa6.83□□□□□ -1.32
UPF1-208ENST00000600012 NDUFS5O43920 106 aa6.82□□□□□ -1.32
UPF1-208ENST00000600012 SCGB1A1P11684 91 aa6.82□□□□□ -1.32
UPF1-208ENST00000600012 LCE2CQ5TA81 110 aa6.81□□□□□ -1.32
UPF1-208ENST00000600012 ATOX1O00244 68 aa6.79□□□□□ -1.32
UPF1-208ENST00000600012 Q8N9P0 234 aaPredicted RBP6.79□□□□□ -1.32
UPF1-208ENST00000600012 C20orf166-AS1Q96NR2 134 aa6.78□□□□□ -1.32
UPF1-208ENST00000600012 A8MUU9 505 aa6.77□□□□□ -1.33
UPF1-208ENST00000600012 KRTAP19-2Q3LHN2 52 aa6.77□□□□□ -1.33
UPF1-208ENST00000600012 OCR1Q9BZK8 76 aa6.77□□□□□ -1.33
UPF1-208ENST00000600012 FSIP2Q5CZC0 6907 aa6.77□□□□□ -1.33
UPF1-208ENST00000600012 MT1HP80294 61 aa6.76□□□□□ -1.33
UPF1-208ENST00000600012 PCOTHQ58A44 107 aa6.76□□□□□ -1.33
UPF1-208ENST00000600012 Q75L30 129 aa6.74□□□□□ -1.33
UPF1-208ENST00000600012 TRAV7A0A075B6U4 112 aa6.73□□□□□ -1.33
UPF1-208ENST00000600012 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
UPF1-208ENST00000600012 SMIM20Q8N5G0 67 aa6.72□□□□□ -1.33
UPF1-208ENST00000600012 TP53AIP1Q9HCN2 124 aa6.72□□□□□ -1.33
UPF1-208ENST00000600012 UQCRQO14949 82 aa6.71□□□□□ -1.34
UPF1-208ENST00000600012 ANAPC13Q9BS18 74 aa6.71□□□□□ -1.34
UPF1-208ENST00000600012 Q5W150 140 aa6.7□□□□□ -1.34
UPF1-208ENST00000600012 SERP2Q8N6R1 65 aa6.69□□□□□ -1.34
UPF1-208ENST00000600012 ZCCHC13Q8WW36 166 aaKnown RBP6.69□□□□□ -1.34
UPF1-208ENST00000600012 TRAV22A0A0B4J277 110 aa6.68□□□□□ -1.34
UPF1-208ENST00000600012 LORP23490 312 aaPredicted RBP6.68□□□□□ -1.34
UPF1-208ENST00000600012 H0Y9P7 68 aa6.67□□□□□ -1.34
UPF1-208ENST00000600012 KRTAP10-6P60371 365 aaPredicted RBP6.67□□□□□ -1.34
UPF1-208ENST00000600012 COX7CP15954 63 aa6.65□□□□□ -1.34
UPF1-208ENST00000600012 ATP11AUNQ6ZP68 121 aa6.65□□□□□ -1.34
UPF1-208ENST00000600012 M0R2T5 61 aa6.63□□□□□ -1.35
UPF1-208ENST00000600012 C5orf47Q569G3 176 aa6.63□□□□□ -1.35
UPF1-208ENST00000600012 MP68P56378 58 aa6.62□□□□□ -1.35
UPF1-208ENST00000600012 COX6B2Q6YFQ2 88 aa6.62□□□□□ -1.35
UPF1-208ENST00000600012 C20orf197Q8N268 126 aa6.61□□□□□ -1.35
UPF1-208ENST00000600012 LINC00208Q96KT6 92 aa6.61□□□□□ -1.35
UPF1-208ENST00000600012 PCP4P48539 62 aa6.6□□□□□ -1.35
UPF1-208ENST00000600012 CCDC179H3BU77 68 aa6.59□□□□□ -1.35
UPF1-208ENST00000600012 C1orf64Q8NEQ6 169 aa6.59□□□□□ -1.35
UPF1-208ENST00000600012 SNURFQ9Y675 71 aa6.59□□□□□ -1.35
UPF1-208ENST00000600012 IGKV2D-30A0A075B6S6 120 aa6.58□□□□□ -1.36
UPF1-208ENST00000600012 IGKV2-30P06310 120 aa6.58□□□□□ -1.36
UPF1-208ENST00000600012 LOC101927531A0A1B0GV80 90 aa6.56□□□□□ -1.36
UPF1-208ENST00000600012 H3BPC8 53 aa6.56□□□□□ -1.36
UPF1-208ENST00000600012 FLGP20930 4061 aaPredicted RBP6.55□□□□□ -1.36
UPF1-208ENST00000600012 C7orf65Q6ZTY9 151 aa6.54□□□□□ -1.36
UPF1-208ENST00000600012 SPINK7P58062 85 aa6.53□□□□□ -1.36
UPF1-208ENST00000600012 CYP4F30PQ9H0H9 118 aa6.53□□□□□ -1.36
UPF1-208ENST00000600012 KLKP1Q107X0 134 aa6.52□□□□□ -1.37
UPF1-208ENST00000600012 CYSTM1Q9H1C7 97 aa6.52□□□□□ -1.37
UPF1-208ENST00000600012 HRES1P13985 223 aa6.44□□□□□ -1.38
UPF1-208ENST00000600012 H7BZZ5 65 aa6.43□□□□□ -1.38
UPF1-208ENST00000600012 NDUFC1O43677 76 aa6.42□□□□□ -1.38
UPF1-208ENST00000600012 C4orf26Q17RF5 130 aa6.41□□□□□ -1.38
UPF1-208ENST00000600012 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
UPF1-208ENST00000600012 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.37□□□□□ -1.39
UPF1-208ENST00000600012 SVIPQ8NHG7 77 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms