RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.84	□□□□□ -1.63
DNMT1-223	ENST00000591239	DSCR10	P59022	87 aa		4.84	□□□□□ -1.63
DNMT1-223	ENST00000591239		A8MUU9	505 aa		4.83	□□□□□ -1.64
DNMT1-223	ENST00000591239	TAX1BP3	O14907	124 aa		4.83	□□□□□ -1.64
DNMT1-223	ENST00000591239	PCP4	P48539	62 aa		4.83	□□□□□ -1.64
DNMT1-223	ENST00000591239	LINC00313	P59037	77 aa		4.83	□□□□□ -1.64
DNMT1-223	ENST00000591239		Q6ZQT0	140 aa		4.82	□□□□□ -1.64
DNMT1-223	ENST00000591239	LOC110117498	A0A087WWA1	95 aa		4.81	□□□□□ -1.64
DNMT1-223	ENST00000591239		A0A1W2PPM0	123 aa		4.81	□□□□□ -1.64
DNMT1-223	ENST00000591239	PDE6G	P18545	87 aa		4.81	□□□□□ -1.64
DNMT1-223	ENST00000591239	IGHV6-1	A0A0B4J1U7	121 aa		4.8	□□□□□ -1.64
DNMT1-223	ENST00000591239		A0A1B0GW54	56 aa		4.8	□□□□□ -1.64
DNMT1-223	ENST00000591239	NOTCH2NL	Q7Z3S9	236 aa		4.8	□□□□□ -1.64
DNMT1-223	ENST00000591239	C14orf132	Q9NPU4	83 aa		4.8	□□□□□ -1.64
DNMT1-223	ENST00000591239	KRTAP16-1	A8MUX0	517 aa		4.79	□□□□□ -1.64
DNMT1-223	ENST00000591239		A0A1B0GVX0	72 aa		4.78	□□□□□ -1.64
DNMT1-223	ENST00000591239		J3KT08	172 aa		4.78	□□□□□ -1.64
DNMT1-223	ENST00000591239	MT1H	P80294	61 aa		4.78	□□□□□ -1.64
DNMT1-223	ENST00000591239	PCP4L1	A6NKN8	68 aa		4.77	□□□□□ -1.65
DNMT1-223	ENST00000591239		H3BT86	120 aa		4.77	□□□□□ -1.65
DNMT1-223	ENST00000591239	COX6B2	Q6YFQ2	88 aa		4.77	□□□□□ -1.65
DNMT1-223	ENST00000591239	MTURN	Q8N3F0	131 aa		4.77	□□□□□ -1.65
DNMT1-223	ENST00000591239	KRTAP3-1	Q9BYR8	98 aa		4.77	□□□□□ -1.65
DNMT1-223	ENST00000591239	C8orf87	E5RJ46	101 aa		4.76	□□□□□ -1.65
DNMT1-223	ENST00000591239	LOC100996750	A0A140TA64	210 aa		4.75	□□□□□ -1.65
DNMT1-223	ENST00000591239	NDUFB1	O75438	58 aa		4.75	□□□□□ -1.65
DNMT1-223	ENST00000591239	KRTAP4-6	Q9BYQ5	205 aa		4.75	□□□□□ -1.65
DNMT1-223	ENST00000591239	FLG	P20930	4061 aa	Predicted RBP	4.74	□□□□□ -1.65
DNMT1-223	ENST00000591239	NREP	Q16612	68 aa		4.74	□□□□□ -1.65
DNMT1-223	ENST00000591239	COL5A1-AS1	Q5SY13	56 aa		4.74	□□□□□ -1.65
DNMT1-223	ENST00000591239	SPCS1	Q9Y6A9	102 aa		4.74	□□□□□ -1.65
DNMT1-223	ENST00000591239		A8MWP4	228 aa		4.73	□□□□□ -1.65
DNMT1-223	ENST00000591239	IGKV3D-7	A0A0C4DH55	119 aa		4.71	□□□□□ -1.66
DNMT1-223	ENST00000591239		M0R2T5	61 aa		4.71	□□□□□ -1.66
DNMT1-223	ENST00000591239	C8orf17	Q9NRJ1	99 aa		4.7	□□□□□ -1.66
DNMT1-223	ENST00000591239	PRR15	Q8IV56	129 aa		4.69	□□□□□ -1.66
DNMT1-223	ENST00000591239	KRTAP10-6	P60371	365 aa	Predicted RBP	4.68	□□□□□ -1.66
DNMT1-223	ENST00000591239		Q8N9P0	234 aa	Predicted RBP	4.68	□□□□□ -1.66
DNMT1-223	ENST00000591239		K7EP34	96 aa		4.67	□□□□□ -1.66
DNMT1-223	ENST00000591239		Q6ZVQ6	151 aa		4.67	□□□□□ -1.66
DNMT1-223	ENST00000591239	ZCCHC13	Q8WW36	166 aa	Known RBP	4.67	□□□□□ -1.66
DNMT1-223	ENST00000591239	PRO0461	Q9UI25	63 aa		4.67	□□□□□ -1.66
DNMT1-223	ENST00000591239		K7EQZ3	153 aa		4.65	□□□□□ -1.67
DNMT1-223	ENST00000591239	BPY2	O14599	106 aa		4.65	□□□□□ -1.67
DNMT1-223	ENST00000591239	HRES1	P13985	223 aa		4.65	□□□□□ -1.67
DNMT1-223	ENST00000591239	MMP24-AS1	A0A0U1RRL7	71 aa		4.64	□□□□□ -1.67
DNMT1-223	ENST00000591239	MPLKIP	Q8TAP9	179 aa		4.64	□□□□□ -1.67
DNMT1-223	ENST00000591239	FAM236D	A0A1B0GTK5	79 aa		4.63	□□□□□ -1.67
DNMT1-223	ENST00000591239	FAM236C	P0DP71	79 aa		4.63	□□□□□ -1.67
DNMT1-223	ENST00000591239	SPINK7	P58062	85 aa		4.63	□□□□□ -1.67
DNMT1-223	ENST00000591239	GTF2H5	Q6ZYL4	71 aa		4.63	□□□□□ -1.67
DNMT1-223	ENST00000591239	TMEM254	Q8TBM7	123 aa		4.63	□□□□□ -1.67
DNMT1-223	ENST00000591239	RBM12B-AS1	Q9P1G2	102 aa		4.63	□□□□□ -1.67
DNMT1-223	ENST00000591239	hDV103S1	A0JD37	113 aa		4.62	□□□□□ -1.67
DNMT1-223	ENST00000591239	MRPL34	Q9BQ48	92 aa	Known RBP	4.62	□□□□□ -1.67
DNMT1-223	ENST00000591239	LINC00846	Q9NV44	126 aa		4.61	□□□□□ -1.67
DNMT1-223	ENST00000591239		F8W1H4	67 aa		4.6	□□□□□ -1.67
DNMT1-223	ENST00000591239		Q8N9L7	120 aa		4.6	□□□□□ -1.67
DNMT1-223	ENST00000591239	UBL5	Q9BZL1	73 aa		4.6	□□□□□ -1.67
DNMT1-223	ENST00000591239	NDUFS5	O43920	106 aa		4.59	□□□□□ -1.67
DNMT1-223	ENST00000591239	KRTAP19-1	Q8IUB9	90 aa		4.59	□□□□□ -1.67
DNMT1-223	ENST00000591239	ETDB	Q3ZM63	59 aa		4.57	□□□□□ -1.68
DNMT1-223	ENST00000591239	CASC2	Q6XLA1	102 aa		4.56	□□□□□ -1.68
DNMT1-223	ENST00000591239	WFDC13	Q8IUB5	93 aa		4.56	□□□□□ -1.68
DNMT1-223	ENST00000591239		A0A1B0GV90	55 aa		4.55	□□□□□ -1.68
DNMT1-223	ENST00000591239	KRTAP4-12	Q9BQ66	201 aa		4.54	□□□□□ -1.68
DNMT1-223	ENST00000591239	KRTAP9-8	Q9BYQ0	159 aa		4.54	□□□□□ -1.68
DNMT1-223	ENST00000591239	KRTAP4-8	Q9BYQ9	185 aa		4.54	□□□□□ -1.68
DNMT1-223	ENST00000591239	HCG22	E2RYF7	251 aa		4.53	□□□□□ -1.68
DNMT1-223	ENST00000591239		Q5W150	140 aa		4.53	□□□□□ -1.68
DNMT1-223	ENST00000591239	IGKV2D-30	A0A075B6S6	120 aa		4.51	□□□□□ -1.69
DNMT1-223	ENST00000591239		A0A0A0MQY5	61 aa		4.51	□□□□□ -1.69
DNMT1-223	ENST00000591239	IGKV2-30	P06310	120 aa		4.51	□□□□□ -1.69
DNMT1-223	ENST00000591239	CRCT1	Q9UGL9	99 aa		4.51	□□□□□ -1.69
DNMT1-223	ENST00000591239	CXCL6	P80162	114 aa		4.5	□□□□□ -1.69
DNMT1-223	ENST00000591239	C7orf65	Q6ZTY9	151 aa		4.49	□□□□□ -1.69
DNMT1-223	ENST00000591239	MT2A	P02795	61 aa		4.48	□□□□□ -1.69
DNMT1-223	ENST00000591239	FSIP2	Q5CZC0	6907 aa		4.48	□□□□□ -1.69
DNMT1-223	ENST00000591239	ACYP1	P07311	99 aa		4.46	□□□□□ -1.7
DNMT1-223	ENST00000591239	H1FX-AS1	Q4G0G2	97 aa		4.45	□□□□□ -1.7
DNMT1-223	ENST00000591239	FAM240A	A0A1B0GVK7	77 aa		4.44	□□□□□ -1.7
DNMT1-223	ENST00000591239	MT1F	P04733	61 aa		4.44	□□□□□ -1.7
DNMT1-223	ENST00000591239	KRTAP10-10	P60014	251 aa		4.44	□□□□□ -1.7
DNMT1-223	ENST00000591239	TP53AIP1	Q9HCN2	124 aa		4.44	□□□□□ -1.7
DNMT1-223	ENST00000591239	C4orf26	Q17RF5	130 aa		4.43	□□□□□ -1.7
DNMT1-223	ENST00000591239	KRTAP9-7	A8MTY7	169 aa		4.41	□□□□□ -1.7
DNMT1-223	ENST00000591239	ATP5EP2	Q5VTU8	51 aa		4.4	□□□□□ -1.71
DNMT1-223	ENST00000591239	KRTAP9-3	Q9BYQ3	159 aa		4.4	□□□□□ -1.71
DNMT1-223	ENST00000591239	LCE4A	Q5TA78	99 aa		4.39	□□□□□ -1.71
DNMT1-223	ENST00000591239	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.38	□□□□□ -1.71
DNMT1-223	ENST00000591239	LCE3B	Q5TA77	95 aa		4.38	□□□□□ -1.71
DNMT1-223	ENST00000591239	HIST1H4A	P62805	103 aa	Known RBP	4.37	□□□□□ -1.71
DNMT1-223	ENST00000591239	LINC00643	Q86TS7	51 aa		4.36	□□□□□ -1.71
DNMT1-223	ENST00000591239	TRAV22	A0A0B4J277	110 aa		4.35	□□□□□ -1.71
DNMT1-223	ENST00000591239	C1orf64	Q8NEQ6	169 aa		4.35	□□□□□ -1.71
DNMT1-223	ENST00000591239	USH2A	O75445	5202 aa		4.35	□□□□□ -1.71
DNMT1-223	ENST00000591239	CYP4F30P	Q9H0H9	118 aa		4.34	□□□□□ -1.71
DNMT1-223	ENST00000591239	KRTAP15-1	Q3LI76	137 aa		4.33	□□□□□ -1.72
DNMT1-223	ENST00000591239		A0A087WVE0	104 aa		4.32	□□□□□ -1.72
DNMT1-223	ENST00000591239	UQCRQ	O14949	82 aa		4.32	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms