RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 IGLV10-54A0A075B6I4 117 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 DEFB131BA0A096LNP1 70 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 DEFB131AP59861 70 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 C1orf137Q5JT78 98 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 WFDC13Q8IUB5 93 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 CCL19Q99731 98 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 TACC2O95359 2948 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 CSMD2Q7Z408 3487 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 PCNX1Q96RV3 2341 aa2.59□□□□□ -1.99
SS18-223ENST00000583595 PLCE1Q9P212 2302 aa2.59□□□□□ -1.99
SS18-223ENST00000583595 SMR3AQ99954 134 aa2.59□□□□□ -1.99
SS18-223ENST00000583595 DCHS2Q6V1P9 2916 aa2.58□□□□□ -2
SS18-223ENST00000583595 WFDC10BQ8IUB3 73 aa2.58□□□□□ -2
SS18-223ENST00000583595 ABCA4P78363 2273 aa2.58□□□□□ -2
SS18-223ENST00000583595 FBN3Q75N90 2809 aa2.58□□□□□ -2
SS18-223ENST00000583595 FLNAP21333 2647 aaKnown RBP2.57□□□□□ -2
SS18-223ENST00000583595 MIR22HGQ0VDD5 57 aa2.57□□□□□ -2
SS18-223ENST00000583595 UNQ6190/PRO20217Q6UXQ8 127 aa2.57□□□□□ -2
SS18-223ENST00000583595 KRTAP5-5Q701N2 237 aaPredicted RBP2.57□□□□□ -2
SS18-223ENST00000583595 TP53AIP1Q9HCN2 124 aa2.57□□□□□ -2
SS18-223ENST00000583595 ACANP16112 2415 aa2.57□□□□□ -2
SS18-223ENST00000583595 JMJD1CQ15652 2540 aa2.56□□□□□ -2
SS18-223ENST00000583595 UQCR11O14957 56 aa2.56□□□□□ -2
SS18-223ENST00000583595 DEFB105AQ8NG35 78 aa2.56□□□□□ -2
SS18-223ENST00000583595 MED13LQ71F56 2210 aa2.56□□□□□ -2
SS18-223ENST00000583595 AKAP6Q13023 2319 aa2.56□□□□□ -2
SS18-223ENST00000583595 NIPBLQ6KC79 2804 aaeCLIP2.55□□□□□ -2
SS18-223ENST00000583595 IGKV2-24A0A0C4DH68 120 aa2.55□□□□□ -2
SS18-223ENST00000583595 HIVEP2P31629 2446 aa2.55□□□□□ -2
SS18-223ENST00000583595 SORL1Q92673 2214 aa2.55□□□□□ -2
SS18-223ENST00000583595 NSD1Q96L73 2696 aaPredicted RBP2.55□□□□□ -2
SS18-223ENST00000583595 NOP10Q9NPE3 64 aaKnown RBP2.55□□□□□ -2
SS18-223ENST00000583595 STAB1Q9NY15 2570 aa2.55□□□□□ -2
SS18-223ENST00000583595 A0A1B0GU69 56 aa2.54□□□□□ -2
SS18-223ENST00000583595 ACYP2P14621 99 aa2.54□□□□□ -2
SS18-223ENST00000583595 PCOTHQ58A44 107 aa2.54□□□□□ -2
SS18-223ENST00000583595 C6orf48Q9UBA6 75 aa2.54□□□□□ -2
SS18-223ENST00000583595 FN1P02751 2386 aaKnown RBP2.54□□□□□ -2
SS18-223ENST00000583595 MAP1AP78559 2803 aaPredicted RBP2.54□□□□□ -2
SS18-223ENST00000583595 ATRQ13535 2644 aa2.53□□□□□ -2
SS18-223ENST00000583595 CLPSL2Q6UWE3 100 aa2.53□□□□□ -2
SS18-223ENST00000583595 CSPG4Q6UVK1 2322 aa2.53□□□□□ -2
SS18-223ENST00000583595 HRNRQ86YZ3 2850 aaPredicted RBP2.53□□□□□ -2
SS18-223ENST00000583595 WNK2Q9Y3S1 2297 aa2.53□□□□□ -2
SS18-223ENST00000583595 A0A087WSZ3 146 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 ANGP03950 147 aaKnown RBP2.52□□□□□ -2.01
SS18-223ENST00000583595 P0C880 135 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 BRD3OSQ6XYD6 125 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 Q6ZRX8 168 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 LINC00304Q8N9R0 145 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 C20orf166-AS1Q96NR2 134 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 PSORS1C2Q9UIG4 136 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 TLN2Q9Y4G6 2542 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 CR1P17927 2039 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 COL6A5A8TX70 2615 aa2.52□□□□□ -2.01
SS18-223ENST00000583595 ZNF469Q96JG9 3925 aaPredicted RBP2.51□□□□□ -2.01
SS18-223ENST00000583595 MMP24-AS1A0A0U1RRL7 71 aa2.51□□□□□ -2.01
SS18-223ENST00000583595 H3BUX3 64 aa2.51□□□□□ -2.01
SS18-223ENST00000583595 ANK3Q12955 4377 aaKnown RBP2.51□□□□□ -2.01
SS18-223ENST00000583595 SONP18583 2426 aaKnown RBP2.5□□□□□ -2.01
SS18-223ENST00000583595 SPRR5A0A1B0GTR4 108 aa2.5□□□□□ -2.01
SS18-223ENST00000583595 SPRR1AP35321 89 aa2.5□□□□□ -2.01
SS18-223ENST00000583595 RPL37AP61513 92 aaKnown RBP2.5□□□□□ -2.01
SS18-223ENST00000583595 NBEAL1Q6ZS30 2694 aa2.49□□□□□ -2.01
SS18-223ENST00000583595 DMAC1Q96GE9 116 aa2.49□□□□□ -2.01
SS18-223ENST00000583595 PRO2289Q9P1D8 64 aa2.49□□□□□ -2.01
SS18-223ENST00000583595 PRO0255Q9UI72 69 aa2.49□□□□□ -2.01
SS18-223ENST00000583595 VPS13CQ709C8 3753 aa2.49□□□□□ -2.01
SS18-223ENST00000583595 MXRA5Q9NR99 2828 aa2.49□□□□□ -2.01
SS18-223ENST00000583595 FBN1P35555 2871 aaKnown RBP2.48□□□□□ -2.01
SS18-223ENST00000583595 ZANQ9Y493 2812 aa2.48□□□□□ -2.01
SS18-223ENST00000583595 A0A0G2JQZ4 141 aa2.48□□□□□ -2.01
SS18-223ENST00000583595 LINC00472Q9H8W2 130 aa2.48□□□□□ -2.01
SS18-223ENST00000583595 ANK2Q01484 3957 aa2.48□□□□□ -2.01
SS18-223ENST00000583595 ROS1P08922 2347 aa2.48□□□□□ -2.01
SS18-223ENST00000583595 TPRXLQ17RH7 258 aa2.47□□□□□ -2.01
SS18-223ENST00000583595 NUPR2A6NF83 97 aa2.46□□□□□ -2.02
SS18-223ENST00000583595 DEFB136Q30KP8 78 aa2.46□□□□□ -2.02
SS18-223ENST00000583595 LELP1Q5T871 98 aa2.46□□□□□ -2.02
SS18-223ENST00000583595 C10orf99Q6UWK7 81 aa2.46□□□□□ -2.02
SS18-223ENST00000583595 C4orf3Q8WVX3 66 aa2.46□□□□□ -2.02
SS18-223ENST00000583595 DEFB130BP0DP73 79 aa2.44□□□□□ -2.02
SS18-223ENST00000583595 DEFB130AP0DP74 79 aa2.44□□□□□ -2.02
SS18-223ENST00000583595 KRTAP10-1P60331 282 aa2.44□□□□□ -2.02
SS18-223ENST00000583595 KRTAP26-1Q6PEX3 210 aa2.44□□□□□ -2.02
SS18-223ENST00000583595 SPACA4Q8TDM5 124 aa2.44□□□□□ -2.02
SS18-223ENST00000583595 MRPL34Q9BQ48 92 aaKnown RBP2.44□□□□□ -2.02
SS18-223ENST00000583595 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.43□□□□□ -2.02
SS18-223ENST00000583595 ALMS1Q8TCU4 4167 aa2.43□□□□□ -2.02
SS18-223ENST00000583595 A0A096LPF7 62 aa2.43□□□□□ -2.02
SS18-223ENST00000583595 SPRR1BP22528 89 aa2.43□□□□□ -2.02
SS18-223ENST00000583595 LCE1CQ5T751 118 aa2.43□□□□□ -2.02
SS18-223ENST00000583595 LCE1BQ5T7P3 118 aa2.43□□□□□ -2.02
SS18-223ENST00000583595 MGAM2Q2M2H8 2515 aa2.42□□□□□ -2.02
SS18-223ENST00000583595 MEGF8Q7Z7M0 2845 aa2.42□□□□□ -2.02
SS18-223ENST00000583595 WNK1Q9H4A3 2382 aa2.42□□□□□ -2.02
SS18-223ENST00000583595 CUBNO60494 3623 aa2.41□□□□□ -2.02
SS18-223ENST00000583595 A0A087WTM6 91 aa2.39□□□□□ -2.03
SS18-223ENST00000583595 LY6G6CO95867 125 aa2.39□□□□□ -2.03
SS18-223ENST00000583595 Q96NJ1 140 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms