RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FXYD4P59646 89 aa2.51□□□□□ -2.01
VPS53-219ENST00000576019 HMGN3Q15651 99 aa2.51□□□□□ -2.01
VPS53-219ENST00000576019 TRBV7-1A0A0A6YYK4 115 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 LOC101927531A0A1B0GV80 90 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 CRYM-AS1A6NIL9 109 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 HIGD1CA8MV81 97 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 H7BZZ5 65 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 SIX6O95475 246 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 RPS27P42677 84 aaKnown RBP2.5□□□□□ -2.01
VPS53-219ENST00000576019 GDF5OSQ5U4N7 250 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 OBSCN-AS1Q96MR7 158 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 NXT2Q9NPJ8 142 aaKnown RBP2.5□□□□□ -2.01
VPS53-219ENST00000576019 PLAC8Q9NZF1 115 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 HIGD1BQ9P298 99 aa2.5□□□□□ -2.01
VPS53-219ENST00000576019 NDUFA4O00483 81 aa2.49□□□□□ -2.01
VPS53-219ENST00000576019 MT2AP02795 61 aa2.49□□□□□ -2.01
VPS53-219ENST00000576019 SPRR2DP22532 72 aa2.49□□□□□ -2.01
VPS53-219ENST00000576019 C18orf32Q8TCD1 76 aa2.49□□□□□ -2.01
VPS53-219ENST00000576019 H3BUT2 72 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 BCE1O60756 84 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 KLK9Q2XQG4 91 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 LINC01556Q5JQF7 62 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 UNQ6190/PRO20217Q6UXQ8 127 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 CYP2G1PQ6ZSU1 146 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 FAM167A-AS1Q96KT0 104 aa2.48□□□□□ -2.01
VPS53-219ENST00000576019 IGKV3D-7A0A0C4DH55 119 aa2.47□□□□□ -2.01
VPS53-219ENST00000576019 IGKV3OR2-268A0A0C4DH90 116 aa2.47□□□□□ -2.01
VPS53-219ENST00000576019 KANTRA0A1W2PQU2 76 aa2.47□□□□□ -2.01
VPS53-219ENST00000576019 MT1FP04733 61 aa2.47□□□□□ -2.01
VPS53-219ENST00000576019 UBE2D3P61077 147 aa2.47□□□□□ -2.01
VPS53-219ENST00000576019 UBE2D2P62837 147 aa2.47□□□□□ -2.01
VPS53-219ENST00000576019 ZCCHC13Q8WW36 166 aaKnown RBP2.47□□□□□ -2.01
VPS53-219ENST00000576019 MUC5BQ9HC84 5762 aaPredicted RBP2.47□□□□□ -2.01
VPS53-219ENST00000576019 SAA2P0DJI9 122 aaPredicted RBP2.46□□□□□ -2.02
VPS53-219ENST00000576019 KLKP1Q107X0 134 aa2.46□□□□□ -2.02
VPS53-219ENST00000576019 ZNF818PQ6ZRF7 136 aa2.46□□□□□ -2.02
VPS53-219ENST00000576019 TRBV7-3A0A075B6L6 115 aa2.45□□□□□ -2.02
VPS53-219ENST00000576019 TRAV22A0A0B4J277 110 aa2.45□□□□□ -2.02
VPS53-219ENST00000576019 IGKV2-29A2NJV5 120 aaPredicted RBP2.45□□□□□ -2.02
VPS53-219ENST00000576019 F2Z2F3 143 aa2.45□□□□□ -2.02
VPS53-219ENST00000576019 CFAP126Q5VTH2 177 aa2.45□□□□□ -2.02
VPS53-219ENST00000576019 Q5VV11 94 aa2.45□□□□□ -2.02
VPS53-219ENST00000576019 TMEM14DPA8MWL7 114 aa2.44□□□□□ -2.02
VPS53-219ENST00000576019 UBE2D1P51668 147 aa2.44□□□□□ -2.02
VPS53-219ENST00000576019 PSMG4Q5JS54 123 aa2.44□□□□□ -2.02
VPS53-219ENST00000576019 MANBALQ9NQG1 85 aa2.44□□□□□ -2.02
VPS53-219ENST00000576019 PRO1854Q9UHT4 67 aa2.44□□□□□ -2.02
VPS53-219ENST00000576019 TIMM8BQ9Y5J9 83 aaPredicted RBP2.44□□□□□ -2.02
VPS53-219ENST00000576019 A0A0G2JND7 137 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 TEX49A0A1B0GTD5 131 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 ACYP1P07311 99 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 GNGT1P63211 74 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 PMCHL1Q16048 86 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 COX6B2Q6YFQ2 88 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 C20orf197Q8N268 126 aa2.43□□□□□ -2.02
VPS53-219ENST00000576019 A0A087WWC5 75 aa2.42□□□□□ -2.02
VPS53-219ENST00000576019 LINC00643Q86TS7 51 aa2.42□□□□□ -2.02
VPS53-219ENST00000576019 NOP10Q9NPE3 64 aaKnown RBP2.42□□□□□ -2.02
VPS53-219ENST00000576019 C7orf77A4D0Y5 90 aa2.41□□□□□ -2.02
VPS53-219ENST00000576019 S100A3P33764 101 aa2.41□□□□□ -2.02
VPS53-219ENST00000576019 RPL39P5Q59GN2 51 aa2.41□□□□□ -2.02
VPS53-219ENST00000576019 LINC00208Q96KT6 92 aa2.41□□□□□ -2.02
VPS53-219ENST00000576019 CDC42SE2Q9NRR3 84 aa2.41□□□□□ -2.02
VPS53-219ENST00000576019 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
VPS53-219ENST00000576019 TRBV25-1A0A075B6N4 114 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 CHKB-CPT1BH3BT56 60 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 SMIM11AP58511 58 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 XAF1Q6GPH4 301 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 PP632Q6XCG6 107 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 SPRR2FQ96RM1 72 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 OBSCNQ5VST9 7968 aa2.4□□□□□ -2.03
VPS53-219ENST00000576019 COX6CP09669 75 aa2.39□□□□□ -2.03
VPS53-219ENST00000576019 SMIM13P0DJ93 91 aa2.39□□□□□ -2.03
VPS53-219ENST00000576019 FXYD6P3P58550 94 aa2.39□□□□□ -2.03
VPS53-219ENST00000576019 TMEM170BQ5T4T1 132 aa2.39□□□□□ -2.03
VPS53-219ENST00000576019 IGKV2-40A0A087WW87 121 aaPredicted RBP2.38□□□□□ -2.03
VPS53-219ENST00000576019 IGKV2D-40P01614 121 aaPredicted RBP2.38□□□□□ -2.03
VPS53-219ENST00000576019 SSBP1Q04837 148 aaKnown RBP2.38□□□□□ -2.03
VPS53-219ENST00000576019 FXYD1O00168 92 aa2.37□□□□□ -2.03
VPS53-219ENST00000576019 DEFB1P60022 68 aa2.37□□□□□ -2.03
VPS53-219ENST00000576019 ZNF56Q15929 161 aa2.37□□□□□ -2.03
VPS53-219ENST00000576019 Q86TA4 180 aa2.37□□□□□ -2.03
VPS53-219ENST00000576019 TMEM167AQ8TBQ9 72 aa2.37□□□□□ -2.03
VPS53-219ENST00000576019 TMEM263Q8WUH6 116 aaKnown RBP2.37□□□□□ -2.03
VPS53-219ENST00000576019 NDUFA4L2Q9NRX3 87 aa2.37□□□□□ -2.03
VPS53-219ENST00000576019 UMAD1C9J7I0 102 aa2.36□□□□□ -2.03
VPS53-219ENST00000576019 ELOF1P60002 83 aaKnown RBP2.36□□□□□ -2.03
VPS53-219ENST00000576019 SFTA2Q6UW10 78 aa2.36□□□□□ -2.03
VPS53-219ENST00000576019 COX7B2Q8TF08 81 aa2.36□□□□□ -2.03
VPS53-219ENST00000576019 PRO0255Q9UI72 69 aa2.36□□□□□ -2.03
VPS53-219ENST00000576019 A0A087WXM4 84 aa2.35□□□□□ -2.03
VPS53-219ENST00000576019 A8MTW9 85 aa2.35□□□□□ -2.03
VPS53-219ENST00000576019 SPINK9Q5DT21 86 aa2.35□□□□□ -2.03
VPS53-219ENST00000576019 Q6ZQY7 126 aa2.35□□□□□ -2.03
VPS53-219ENST00000576019 LENEPQ9Y5L5 61 aa2.35□□□□□ -2.03
VPS53-219ENST00000576019 LCE3AQ5TA76 89 aa2.34□□□□□ -2.03
VPS53-219ENST00000576019 F8WEM9 126 aa2.33□□□□□ -2.04
VPS53-219ENST00000576019 SFTA3P0C7M3 94 aa2.33□□□□□ -2.04
VPS53-219ENST00000576019 PSENENQ9NZ42 101 aa2.33□□□□□ -2.04
VPS53-219ENST00000576019 MYMXA0A1B0GTQ4 84 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms