RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 ADM2Q7Z4H4 148 aa9.79□□□□□ -0.84
USP43-204ENST00000573955 H3BPC8 53 aa9.79□□□□□ -0.84
USP43-204ENST00000573955 SPAG11AQ6PDA7 123 aa9.79□□□□□ -0.84
USP43-204ENST00000573955 Q8NBF4 154 aa9.78□□□□□ -0.84
USP43-204ENST00000573955 PLA2G1BP04054 148 aaKnown RBP9.78□□□□□ -0.84
USP43-204ENST00000573955 DEFB116Q30KQ4 102 aa9.78□□□□□ -0.84
USP43-204ENST00000573955 H0Y9P7 68 aa9.77□□□□□ -0.85
USP43-204ENST00000573955 IGFL1Q6UW32 110 aa9.77□□□□□ -0.85
USP43-204ENST00000573955 PLAC8Q9NZF1 115 aa9.77□□□□□ -0.85
USP43-204ENST00000573955 WFDC13Q8IUB5 93 aa9.76□□□□□ -0.85
USP43-204ENST00000573955 ALMS1Q8TCU4 4167 aa9.76□□□□□ -0.85
USP43-204ENST00000573955 SACSQ9NZJ4 4579 aa9.76□□□□□ -0.85
USP43-204ENST00000573955 H0Y9J4 135 aa9.76□□□□□ -0.85
USP43-204ENST00000573955 DNAH11Q96DT5 4516 aa9.75□□□□□ -0.85
USP43-204ENST00000573955 KRTAP10-2P60368 255 aa9.74□□□□□ -0.85
USP43-204ENST00000573955 KRTAP13-1Q8IUC0 172 aa9.73□□□□□ -0.85
USP43-204ENST00000573955 KMT2CQ8NEZ4 4911 aaKnown RBP9.73□□□□□ -0.85
USP43-204ENST00000573955 FAT2Q9NYQ8 4349 aa9.73□□□□□ -0.85
USP43-204ENST00000573955 PSORS1C2Q9UIG4 136 aa9.73□□□□□ -0.85
USP43-204ENST00000573955 DNAH5Q8TE73 4624 aa9.73□□□□□ -0.85
USP43-204ENST00000573955 DNAH8Q96JB1 4490 aa9.72□□□□□ -0.85
USP43-204ENST00000573955 SPRR4Q96PI1 79 aa9.71□□□□□ -0.85
USP43-204ENST00000573955 IGLV7-46A0A075B6I9 117 aa9.69□□□□□ -0.86
USP43-204ENST00000573955 PKHD1P08F94 4074 aa9.69□□□□□ -0.86
USP43-204ENST00000573955 ASB16-AS1Q495Z4 193 aa9.69□□□□□ -0.86
USP43-204ENST00000573955 PKD1P98161 4303 aa9.69□□□□□ -0.86
USP43-204ENST00000573955 A0A087WSZ3 146 aa9.69□□□□□ -0.86
USP43-204ENST00000573955 SPRR1BP22528 89 aa9.68□□□□□ -0.86
USP43-204ENST00000573955 IGLV9-49A0A0B4J1Y8 123 aa9.67□□□□□ -0.86
USP43-204ENST00000573955 IGLV8-61A0A075B6I0 122 aa9.67□□□□□ -0.86
USP43-204ENST00000573955 RETNLBQ9BQ08 111 aa9.67□□□□□ -0.86
USP43-204ENST00000573955 ANAPC11Q9NYG5 84 aa9.66□□□□□ -0.86
USP43-204ENST00000573955 CIRBP-AS1Q8TBR5 109 aa9.62□□□□□ -0.87
USP43-204ENST00000573955 KRTAP29-1A8MX34 341 aaPredicted RBP9.6□□□□□ -0.87
USP43-204ENST00000573955 ZNF861PO60384 105 aa9.6□□□□□ -0.87
USP43-204ENST00000573955 ZNF706Q9Y5V0 76 aaPredicted RBP9.59□□□□□ -0.87
USP43-204ENST00000573955 A0A087X002 238 aa9.59□□□□□ -0.87
USP43-204ENST00000573955 KRTAP10-1P60331 282 aa9.59□□□□□ -0.87
USP43-204ENST00000573955 RYR2Q92736 4967 aa9.57□□□□□ -0.88
USP43-204ENST00000573955 RPL37AP61513 92 aaKnown RBP9.57□□□□□ -0.88
USP43-204ENST00000573955 IGLV7-43P04211 117 aa9.55□□□□□ -0.88
USP43-204ENST00000573955 PCOTHQ58A44 107 aa9.55□□□□□ -0.88
USP43-204ENST00000573955 LINC00483Q53H64 154 aa9.54□□□□□ -0.88
USP43-204ENST00000573955 LRP1BQ9NZR2 4599 aa9.54□□□□□ -0.88
USP43-204ENST00000573955 A0A0A0MQY5 61 aa9.52□□□□□ -0.88
USP43-204ENST00000573955 CSAG1Q6PB30 78 aa9.52□□□□□ -0.88
USP43-204ENST00000573955 HRES1P13985 223 aa9.49□□□□□ -0.89
USP43-204ENST00000573955 RYR3Q15413 4870 aa9.48□□□□□ -0.89
USP43-204ENST00000573955 Q6ZSA8 131 aa9.48□□□□□ -0.89
USP43-204ENST00000573955 LINC00472Q9H8W2 130 aa9.46□□□□□ -0.89
USP43-204ENST00000573955 VPS13BQ7Z7G8 4022 aa9.43□□□□□ -0.9
USP43-204ENST00000573955 DYNC1H1Q14204 4646 aaKnown RBP9.43□□□□□ -0.9
USP43-204ENST00000573955 A8MWP4 228 aa9.39□□□□□ -0.91
USP43-204ENST00000573955 Q96NJ1 140 aa9.39□□□□□ -0.91
USP43-204ENST00000573955 SPATA8Q6RVD6 105 aa9.38□□□□□ -0.91
USP43-204ENST00000573955 SMR3BP02814 79 aaPredicted RBP9.36□□□□□ -0.91
USP43-204ENST00000573955 FAT1Q14517 4588 aa9.35□□□□□ -0.91
USP43-204ENST00000573955 IGHV6-1A0A0B4J1U7 121 aa9.34□□□□□ -0.91
USP43-204ENST00000573955 SPINK6Q6UWN8 80 aa9.34□□□□□ -0.91
USP43-204ENST00000573955 ROMO1P60602 79 aa9.32□□□□□ -0.92
USP43-204ENST00000573955 TP53AIP1Q9HCN2 124 aa9.32□□□□□ -0.92
USP43-204ENST00000573955 MIR22HGQ0VDD5 57 aa9.31□□□□□ -0.92
USP43-204ENST00000573955 KRTAP13-2Q52LG2 175 aa9.31□□□□□ -0.92
USP43-204ENST00000573955 MMP24-AS1A0A0U1RRL7 71 aa9.3□□□□□ -0.92
USP43-204ENST00000573955 A0A1B0GVY2 172 aa9.3□□□□□ -0.92
USP43-204ENST00000573955 A0A1B0GU69 56 aa9.29□□□□□ -0.92
USP43-204ENST00000573955 APOBP04114 4563 aaKnown RBP9.28□□□□□ -0.92
USP43-204ENST00000573955 CDK2AP2O75956 126 aa9.27□□□□□ -0.93
USP43-204ENST00000573955 SSBP3-AS1Q7Z2R9 100 aa9.27□□□□□ -0.93
USP43-204ENST00000573955 KRTAP1-4P0C5Y4 121 aa9.26□□□□□ -0.93
USP43-204ENST00000573955 UQCR11O14957 56 aa9.25□□□□□ -0.93
USP43-204ENST00000573955 NOTCH2NLQ7Z3S9 236 aa9.24□□□□□ -0.93
USP43-204ENST00000573955 A0A1B0GVX0 72 aa9.24□□□□□ -0.93
USP43-204ENST00000573955 C8orf17Q9NRJ1 99 aa9.23□□□□□ -0.93
USP43-204ENST00000573955 ACYP2P14621 99 aa9.19□□□□□ -0.94
USP43-204ENST00000573955 EPPK1P58107 5090 aaKnown RBP9.18□□□□□ -0.94
USP43-204ENST00000573955 TYMSOSQ8TAI1 123 aa9.16□□□□□ -0.94
USP43-204ENST00000573955 KRTAP25-1Q3LHN0 102 aa9.13□□□□□ -0.95
USP43-204ENST00000573955 KIAA1109Q2LD37 5005 aa9.13□□□□□ -0.95
USP43-204ENST00000573955 MRPL34Q9BQ48 92 aaKnown RBP9.12□□□□□ -0.95
USP43-204ENST00000573955 HSPG2P98160 4391 aa9.08□□□□□ -0.96
USP43-204ENST00000573955 FLG2Q5D862 2391 aaPredicted RBP9.08□□□□□ -0.96
USP43-204ENST00000573955 KRTAP17-1Q9BYP8 105 aa9.05□□□□□ -0.96
USP43-204ENST00000573955 P0C880 135 aa9.05□□□□□ -0.96
USP43-204ENST00000573955 KRTAP10-4P60372 401 aaPredicted RBP9.04□□□□□ -0.96
USP43-204ENST00000573955 DMAC1Q96GE9 116 aa9.03□□□□□ -0.96
USP43-204ENST00000573955 LRP1Q07954 4544 aaKnown RBP9.03□□□□□ -0.96
USP43-204ENST00000573955 LINC00304Q8N9R0 145 aa9.01□□□□□ -0.97
USP43-204ENST00000573955 RYR1P21817 5038 aa9.01□□□□□ -0.97
USP43-204ENST00000573955 SPINK1P00995 79 aa9.01□□□□□ -0.97
USP43-204ENST00000573955 Q5W150 140 aa8.99□□□□□ -0.97
USP43-204ENST00000573955 A8MUU9 505 aa8.95□□□□□ -0.98
USP43-204ENST00000573955 MYCBP2O75592 4640 aa8.94□□□□□ -0.98
USP43-204ENST00000573955 PKHD1L1Q86WI1 4243 aa8.94□□□□□ -0.98
USP43-204ENST00000573955 Q5VSD8 79 aa8.91□□□□□ -0.98
USP43-204ENST00000573955 KRTAP16-1A8MUX0 517 aa8.9□□□□□ -0.98
USP43-204ENST00000573955 FAM229AH3BQW9 127 aa8.88□□□□□ -0.99
USP43-204ENST00000573955 KRTAP13-3Q3SY46 172 aa8.88□□□□□ -0.99
USP43-204ENST00000573955 DMBT1Q9UGM3 2413 aaPredicted RBP8.87□□□□□ -0.99
USP43-204ENST00000573955 RPS29P62273 56 aaKnown RBP8.84□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms