RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 MDN1Q9NU22 5596 aa2.67□□□□□ -1.98
VPS53-208ENST00000570650 A0A1W2PNM2 257 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 IGKV4-1P06312 121 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 SPRR2EP22531 72 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 SPRR2BP35325 72 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 SPRR2AP35326 72 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 LCE3EQ5T5B0 92 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 Q5VV11 94 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 WFDC13Q8IUB5 93 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 MUSTN1Q8IVN3 82 aa2.66□□□□□ -1.98
VPS53-208ENST00000570650 ZCCHC13Q8WW36 166 aaKnown RBP2.65□□□□□ -1.99
VPS53-208ENST00000570650 SYS1-DBNDD2H3BUS1 97 aa2.64□□□□□ -1.99
VPS53-208ENST00000570650 YPEL4Q96NS1 127 aa2.64□□□□□ -1.99
VPS53-208ENST00000570650 IGHV6-1A0A0B4J1U7 121 aa2.63□□□□□ -1.99
VPS53-208ENST00000570650 C8orf87E5RJ46 101 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 SNAPINO95295 136 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 TRGC2P03986 189 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 C3orf79P0CE67 100 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 NDUFV3P56181 108 aaKnown RBP2.62□□□□□ -1.99
VPS53-208ENST00000570650 KRTAP19-8Q3LI54 63 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 LINC01545Q5VT33 79 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 SPRR2FQ96RM1 72 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 C12orf57Q99622 126 aa2.62□□□□□ -1.99
VPS53-208ENST00000570650 APOC3P02656 99 aa2.61□□□□□ -1.99
VPS53-208ENST00000570650 H1FX-AS1Q4G0G2 97 aa2.61□□□□□ -1.99
VPS53-208ENST00000570650 BVES-AS1Q5T3Y7 98 aa2.61□□□□□ -1.99
VPS53-208ENST00000570650 SVBPQ8N300 66 aa2.61□□□□□ -1.99
VPS53-208ENST00000570650 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
VPS53-208ENST00000570650 H3BMG7 143 aa2.6□□□□□ -1.99
VPS53-208ENST00000570650 NDUFA5Q16718 116 aa2.6□□□□□ -1.99
VPS53-208ENST00000570650 DEFB116Q30KQ4 102 aa2.6□□□□□ -1.99
VPS53-208ENST00000570650 RAB37Q96AX2 223 aa2.6□□□□□ -1.99
VPS53-208ENST00000570650 FAM236AA0A1B0GUQ0 79 aa2.59□□□□□ -1.99
VPS53-208ENST00000570650 FAM236BA0A1B0GV22 79 aa2.59□□□□□ -1.99
VPS53-208ENST00000570650 KRTAP5-4Q6L8H1 288 aa2.59□□□□□ -1.99
VPS53-208ENST00000570650 SPRR2GQ9BYE4 73 aa2.59□□□□□ -1.99
VPS53-208ENST00000570650 LINC00472Q9H8W2 130 aa2.59□□□□□ -1.99
VPS53-208ENST00000570650 A0A1B0GVX0 72 aa2.58□□□□□ -2
VPS53-208ENST00000570650 SNCGO76070 127 aa2.58□□□□□ -2
VPS53-208ENST00000570650 TRBV7-4A0A0J9YYF1 115 aa2.57□□□□□ -2
VPS53-208ENST00000570650 SPRR2DP22532 72 aa2.57□□□□□ -2
VPS53-208ENST00000570650 IMUPQ9GZP8 106 aa2.57□□□□□ -2
VPS53-208ENST00000570650 KRTAP12-2P59991 146 aa2.56□□□□□ -2
VPS53-208ENST00000570650 LYRM7Q5U5X0 104 aa2.56□□□□□ -2
VPS53-208ENST00000570650 DSCR8Q96T75 97 aa2.56□□□□□ -2
VPS53-208ENST00000570650 IGKV3D-7A0A0C4DH55 119 aa2.55□□□□□ -2
VPS53-208ENST00000570650 FABP2P12104 132 aa2.55□□□□□ -2
VPS53-208ENST00000570650 ANKRD29Q8N6D5 301 aa2.55□□□□□ -2
VPS53-208ENST00000570650 A8MU10 97 aa2.54□□□□□ -2
VPS53-208ENST00000570650 TRACP01848 142 aa2.54□□□□□ -2
VPS53-208ENST00000570650 H0YGX0 51 aa2.53□□□□□ -2
VPS53-208ENST00000570650 KRTDAPP60985 99 aa2.53□□□□□ -2
VPS53-208ENST00000570650 ATOH7Q8N100 152 aa2.53□□□□□ -2
VPS53-208ENST00000570650 J3KT08 172 aa2.52□□□□□ -2.01
VPS53-208ENST00000570650 CCKP06307 115 aa2.52□□□□□ -2.01
VPS53-208ENST00000570650 C5orf47Q569G3 176 aa2.52□□□□□ -2.01
VPS53-208ENST00000570650 KRTAP8-1Q8IUC2 63 aa2.52□□□□□ -2.01
VPS53-208ENST00000570650 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
VPS53-208ENST00000570650 A0A1B0GV72 72 aa2.51□□□□□ -2.01
VPS53-208ENST00000570650 A0A1B0GX51 115 aa2.51□□□□□ -2.01
VPS53-208ENST00000570650 NDUFB1O75438 58 aa2.51□□□□□ -2.01
VPS53-208ENST00000570650 OCR1Q9BZK8 76 aa2.51□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BKO60814 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BJP06899 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BOP23527 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BBP33778 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BDP58876 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BCP62807 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 KLKP1Q107X0 134 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST2H2BEQ16778 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BHQ93079 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BNQ99877 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H2BMQ99879 126 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 C8orf17Q9NRJ1 99 aa2.5□□□□□ -2.01
VPS53-208ENST00000570650 H3BQ85 93 aa2.48□□□□□ -2.01
VPS53-208ENST00000570650 C2orf91Q6ZV80 131 aa2.48□□□□□ -2.01
VPS53-208ENST00000570650 Q6ZVQ6 151 aa2.48□□□□□ -2.01
VPS53-208ENST00000570650 HIST1H4GQ99525 98 aa2.48□□□□□ -2.01
VPS53-208ENST00000570650 VPS25Q9BRG1 176 aa2.48□□□□□ -2.01
VPS53-208ENST00000570650 OBSCNQ5VST9 7968 aa2.47□□□□□ -2.01
VPS53-208ENST00000570650 CSAG1Q6PB30 78 aa2.47□□□□□ -2.01
VPS53-208ENST00000570650 C7orf65Q6ZTY9 151 aa2.47□□□□□ -2.01
VPS53-208ENST00000570650 ORMDL1Q9P0S3 153 aa2.47□□□□□ -2.01
VPS53-208ENST00000570650 A0A0B4J2C4 111 aa2.46□□□□□ -2.02
VPS53-208ENST00000570650 TMEM256-PLSCR3K7ERE1 68 aa2.46□□□□□ -2.02
VPS53-208ENST00000570650 DNAL4O96015 105 aa2.46□□□□□ -2.02
VPS53-208ENST00000570650 PRR15Q8IV56 129 aa2.46□□□□□ -2.02
VPS53-208ENST00000570650 PRO2289Q9P1D8 64 aa2.46□□□□□ -2.02
VPS53-208ENST00000570650 S4R3F8 94 aa2.46□□□□□ -2.02
VPS53-208ENST00000570650 HSBP1L1C9JCN9 74 aa2.45□□□□□ -2.02
VPS53-208ENST00000570650 C4orf26Q17RF5 130 aa2.45□□□□□ -2.02
VPS53-208ENST00000570650 MRPL34Q9BQ48 92 aaKnown RBP2.45□□□□□ -2.02
VPS53-208ENST00000570650 CRIPTQ9P021 101 aa2.45□□□□□ -2.02
VPS53-208ENST00000570650 COA6Q5JTJ3 125 aaKnown RBP2.44□□□□□ -2.02
VPS53-208ENST00000570650 LCE3AQ5TA76 89 aa2.44□□□□□ -2.02
VPS53-208ENST00000570650 TMEM254Q8TBM7 123 aa2.44□□□□□ -2.02
VPS53-208ENST00000570650 NDUFS5O43920 106 aa2.43□□□□□ -2.02
VPS53-208ENST00000570650 MT1XP80297 61 aa2.43□□□□□ -2.02
VPS53-208ENST00000570650 Q6ZQT0 140 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms