RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PPDPFLQ8WWR9 84 aa8.61□□□□□ -1.03
CLK3-227ENST00000570296 LST1O00453 97 aa8.6□□□□□ -1.03
CLK3-227ENST00000570296 Q6JHZ5 121 aa8.6□□□□□ -1.03
CLK3-227ENST00000570296 MTURNQ8N3F0 131 aa8.6□□□□□ -1.03
CLK3-227ENST00000570296 NAA38Q9BRA0 125 aaKnown RBP8.59□□□□□ -1.03
CLK3-227ENST00000570296 SNHG12Q9BXW3 62 aa8.59□□□□□ -1.03
CLK3-227ENST00000570296 A6NN06 94 aa8.58□□□□□ -1.04
CLK3-227ENST00000570296 H3BQ85 93 aa8.58□□□□□ -1.04
CLK3-227ENST00000570296 H3BUT2 72 aa8.58□□□□□ -1.04
CLK3-227ENST00000570296 NOTCH2NLQ7Z3S9 236 aa8.58□□□□□ -1.04
CLK3-227ENST00000570296 C9orf118A6NHY6 69 aa8.57□□□□□ -1.04
CLK3-227ENST00000570296 COL5A1-AS1Q5SY13 56 aa8.57□□□□□ -1.04
CLK3-227ENST00000570296 ORMDL1Q9P0S3 153 aa8.57□□□□□ -1.04
CLK3-227ENST00000570296 TRACP01848 142 aa8.56□□□□□ -1.04
CLK3-227ENST00000570296 ATXN8Q156A1 80 aa8.56□□□□□ -1.04
CLK3-227ENST00000570296 TAX1BP3O14907 124 aa8.55□□□□□ -1.04
CLK3-227ENST00000570296 FABP2P12104 132 aa8.55□□□□□ -1.04
CLK3-227ENST00000570296 TMEM256-PLSCR3K7ERE1 68 aa8.52□□□□□ -1.05
CLK3-227ENST00000570296 A0A1W2PPM0 123 aa8.51□□□□□ -1.05
CLK3-227ENST00000570296 NDUFV3P56181 108 aaKnown RBP8.5□□□□□ -1.05
CLK3-227ENST00000570296 GPR98Q8WXG9 6306 aa8.48□□□□□ -1.05
CLK3-227ENST00000570296 BAALC-AS2P0C853 105 aa8.47□□□□□ -1.05
CLK3-227ENST00000570296 DSCR10P59022 87 aa8.47□□□□□ -1.05
CLK3-227ENST00000570296 H3BMG7 143 aa8.46□□□□□ -1.06
CLK3-227ENST00000570296 UBE2V1Q13404 147 aa8.46□□□□□ -1.06
CLK3-227ENST00000570296 SS18L2Q9UHA2 77 aa8.46□□□□□ -1.06
CLK3-227ENST00000570296 SPCS1Q9Y6A9 102 aa8.44□□□□□ -1.06
CLK3-227ENST00000570296 C9JAW5 83 aa8.43□□□□□ -1.06
CLK3-227ENST00000570296 ANKRD29Q8N6D5 301 aa8.43□□□□□ -1.06
CLK3-227ENST00000570296 KRTAP2-2Q9BYT5 123 aa8.43□□□□□ -1.06
CLK3-227ENST00000570296 KRTAP2-1Q9BYU5 128 aa8.43□□□□□ -1.06
CLK3-227ENST00000570296 A0A1B0GV72 72 aa8.39□□□□□ -1.07
CLK3-227ENST00000570296 RBM3P98179 157 aaKnown RBP8.38□□□□□ -1.07
CLK3-227ENST00000570296 JMJD7-PLA2G4BH0Y9G9 81 aa8.37□□□□□ -1.07
CLK3-227ENST00000570296 H3BT86 120 aa8.37□□□□□ -1.07
CLK3-227ENST00000570296 LINC00313P59037 77 aa8.37□□□□□ -1.07
CLK3-227ENST00000570296 GTF2H5Q6ZYL4 71 aa8.37□□□□□ -1.07
CLK3-227ENST00000570296 DSCR8Q96T75 97 aa8.37□□□□□ -1.07
CLK3-227ENST00000570296 K7EP34 96 aa8.36□□□□□ -1.07
CLK3-227ENST00000570296 TEN1Q86WV5 123 aa8.35□□□□□ -1.07
CLK3-227ENST00000570296 CCKP06307 115 aa8.31□□□□□ -1.08
CLK3-227ENST00000570296 KRTAP10-5P60370 271 aa8.31□□□□□ -1.08
CLK3-227ENST00000570296 TRBV7-4A0A0J9YYF1 115 aa8.3□□□□□ -1.08
CLK3-227ENST00000570296 SPRR2EP22531 72 aa8.3□□□□□ -1.08
CLK3-227ENST00000570296 SPRR2BP35325 72 aa8.3□□□□□ -1.08
CLK3-227ENST00000570296 SPRR2AP35326 72 aa8.3□□□□□ -1.08
CLK3-227ENST00000570296 VPS25Q9BRG1 176 aa8.3□□□□□ -1.08
CLK3-227ENST00000570296 MT1BP07438 61 aa8.29□□□□□ -1.08
CLK3-227ENST00000570296 PDE6GP18545 87 aa8.29□□□□□ -1.08
CLK3-227ENST00000570296 SIGMAR1Q99720 223 aa8.29□□□□□ -1.08
CLK3-227ENST00000570296 A0A1W2PNM2 257 aa8.28□□□□□ -1.08
CLK3-227ENST00000570296 C21orf62-AS1Q17RA5 79 aa8.28□□□□□ -1.08
CLK3-227ENST00000570296 A0A087WSZ3 146 aa8.27□□□□□ -1.09
CLK3-227ENST00000570296 SPINK7P58062 85 aa8.27□□□□□ -1.09
CLK3-227ENST00000570296 C14orf132Q9NPU4 83 aa8.26□□□□□ -1.09
CLK3-227ENST00000570296 LOC110117498A0A087WWA1 95 aa8.25□□□□□ -1.09
CLK3-227ENST00000570296 F8W1H4 67 aa8.24□□□□□ -1.09
CLK3-227ENST00000570296 Q5VV11 94 aa8.24□□□□□ -1.09
CLK3-227ENST00000570296 Q6ZQT0 140 aa8.23□□□□□ -1.09
CLK3-227ENST00000570296 PRO0461Q9UI25 63 aa8.23□□□□□ -1.09
CLK3-227ENST00000570296 SMCPP49901 116 aaPredicted RBP8.21□□□□□ -1.1
CLK3-227ENST00000570296 A0A1B0GW54 56 aa8.2□□□□□ -1.1
CLK3-227ENST00000570296 SPRR2FQ96RM1 72 aa8.2□□□□□ -1.1
CLK3-227ENST00000570296 WFDC13Q8IUB5 93 aa8.19□□□□□ -1.1
CLK3-227ENST00000570296 ZCCHC13Q8WW36 166 aaKnown RBP8.17□□□□□ -1.1
CLK3-227ENST00000570296 A0A1B0GV90 55 aa8.16□□□□□ -1.1
CLK3-227ENST00000570296 IGKV4-1P06312 121 aa8.15□□□□□ -1.1
CLK3-227ENST00000570296 KRTAP19-8Q3LI54 63 aa8.15□□□□□ -1.1
CLK3-227ENST00000570296 ETDBQ3ZM63 59 aa8.13□□□□□ -1.11
CLK3-227ENST00000570296 NREPQ16612 68 aa8.1□□□□□ -1.11
CLK3-227ENST00000570296 J3KT08 172 aa8.09□□□□□ -1.11
CLK3-227ENST00000570296 H1FX-AS1Q4G0G2 97 aa8.09□□□□□ -1.11
CLK3-227ENST00000570296 LINC00472Q9H8W2 130 aa8.09□□□□□ -1.11
CLK3-227ENST00000570296 IGHV6-1A0A0B4J1U7 121 aa8.08□□□□□ -1.12
CLK3-227ENST00000570296 DEFB116Q30KQ4 102 aa8.08□□□□□ -1.12
CLK3-227ENST00000570296 LCE1AQ5T7P2 110 aa8.07□□□□□ -1.12
CLK3-227ENST00000570296 SPRR2GQ9BYE4 73 aa8.05□□□□□ -1.12
CLK3-227ENST00000570296 SPRR2DP22532 72 aa8.04□□□□□ -1.12
CLK3-227ENST00000570296 NDUFB1O75438 58 aa8.03□□□□□ -1.12
CLK3-227ENST00000570296 C8orf87E5RJ46 101 aa8.02□□□□□ -1.13
CLK3-227ENST00000570296 UBL5Q9BZL1 73 aa8.02□□□□□ -1.13
CLK3-227ENST00000570296 BPY2O14599 106 aa7.99□□□□□ -1.13
CLK3-227ENST00000570296 Q6ZVQ6 151 aa7.99□□□□□ -1.13
CLK3-227ENST00000570296 FAM236AA0A1B0GUQ0 79 aa7.98□□□□□ -1.13
CLK3-227ENST00000570296 FAM236BA0A1B0GV22 79 aa7.98□□□□□ -1.13
CLK3-227ENST00000570296 A0A1B0GVX0 72 aa7.98□□□□□ -1.13
CLK3-227ENST00000570296 ACYP1P07311 99 aa7.96□□□□□ -1.14
CLK3-227ENST00000570296 IMUPQ9GZP8 106 aa7.96□□□□□ -1.14
CLK3-227ENST00000570296 FAM240AA0A1B0GVK7 77 aa7.92□□□□□ -1.14
CLK3-227ENST00000570296 IGKV3D-7A0A0C4DH55 119 aa7.91□□□□□ -1.14
CLK3-227ENST00000570296 J3QR89 54 aa7.91□□□□□ -1.14
CLK3-227ENST00000570296 PRR15Q8IV56 129 aa7.91□□□□□ -1.14
CLK3-227ENST00000570296 LCE3BQ5TA77 95 aa7.89□□□□□ -1.15
CLK3-227ENST00000570296 C8orf17Q9NRJ1 99 aa7.88□□□□□ -1.15
CLK3-227ENST00000570296 K7EQZ3 153 aa7.87□□□□□ -1.15
CLK3-227ENST00000570296 KRTAP8-1Q8IUC2 63 aa7.86□□□□□ -1.15
CLK3-227ENST00000570296 CXCL6P80162 114 aa7.85□□□□□ -1.15
CLK3-227ENST00000570296 Q8N9L7 120 aa7.82□□□□□ -1.16
CLK3-227ENST00000570296 MMP24-AS1A0A0U1RRL7 71 aa7.81□□□□□ -1.16
CLK3-227ENST00000570296 hDV103S1A0JD37 113 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms