RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 LINC00472Q9H8W2 130 aa4.94□□□□□ -1.62
VPS39-211ENST00000568755 C2orf91Q6ZV80 131 aa4.93□□□□□ -1.62
VPS39-211ENST00000568755 C14orf144Q96I85 54 aa4.93□□□□□ -1.62
VPS39-211ENST00000568755 DEFB116Q30KQ4 102 aa4.92□□□□□ -1.62
VPS39-211ENST00000568755 ANKRD29Q8N6D5 301 aa4.92□□□□□ -1.62
VPS39-211ENST00000568755 IGHV6-1A0A0B4J1U7 121 aa4.91□□□□□ -1.62
VPS39-211ENST00000568755 TRIAP1O43715 76 aa4.91□□□□□ -1.62
VPS39-211ENST00000568755 S100A6P06703 90 aa4.91□□□□□ -1.62
VPS39-211ENST00000568755 KRTAP19-6Q3LI70 58 aa4.91□□□□□ -1.62
VPS39-211ENST00000568755 CEND1Q8N111 149 aa4.91□□□□□ -1.62
VPS39-211ENST00000568755 PRO1854Q9UHT4 67 aa4.91□□□□□ -1.62
VPS39-211ENST00000568755 A0A1B0GV72 72 aa4.89□□□□□ -1.63
VPS39-211ENST00000568755 ORMDL1Q9P0S3 153 aa4.89□□□□□ -1.63
VPS39-211ENST00000568755 CCKP06307 115 aa4.88□□□□□ -1.63
VPS39-211ENST00000568755 FXYD2P54710 66 aa4.88□□□□□ -1.63
VPS39-211ENST00000568755 SPATA45Q537H7 98 aa4.88□□□□□ -1.63
VPS39-211ENST00000568755 MTURNQ8N3F0 131 aa4.88□□□□□ -1.63
VPS39-211ENST00000568755 PAM16Q9Y3D7 125 aa4.88□□□□□ -1.63
VPS39-211ENST00000568755 A0A1B0GVX0 72 aa4.87□□□□□ -1.63
VPS39-211ENST00000568755 C8orf87E5RJ46 101 aa4.87□□□□□ -1.63
VPS39-211ENST00000568755 H3BQ85 93 aa4.87□□□□□ -1.63
VPS39-211ENST00000568755 DNAL4O96015 105 aa4.87□□□□□ -1.63
VPS39-211ENST00000568755 TRACP01848 142 aa4.87□□□□□ -1.63
VPS39-211ENST00000568755 ZCCHC13Q8WW36 166 aaKnown RBP4.87□□□□□ -1.63
VPS39-211ENST00000568755 LINC00846Q9NV44 126 aa4.87□□□□□ -1.63
VPS39-211ENST00000568755 KRTAP23-1A1A580 65 aa4.85□□□□□ -1.63
VPS39-211ENST00000568755 TMEM256-PLSCR3K7ERE1 68 aa4.85□□□□□ -1.63
VPS39-211ENST00000568755 SPINK7P58062 85 aa4.85□□□□□ -1.63
VPS39-211ENST00000568755 A8MWP4 228 aa4.83□□□□□ -1.64
VPS39-211ENST00000568755 UBE2V1Q13404 147 aa4.83□□□□□ -1.64
VPS39-211ENST00000568755 VAMP8Q9BV40 100 aa4.83□□□□□ -1.64
VPS39-211ENST00000568755 Q8N9P0 234 aaPredicted RBP4.82□□□□□ -1.64
VPS39-211ENST00000568755 K7ERJ3 54 aa4.81□□□□□ -1.64
VPS39-211ENST00000568755 PSMB2P49721 201 aa4.81□□□□□ -1.64
VPS39-211ENST00000568755 S100A1P23297 94 aa4.8□□□□□ -1.64
VPS39-211ENST00000568755 WFDC13Q8IUB5 93 aa4.8□□□□□ -1.64
VPS39-211ENST00000568755 VPS25Q9BRG1 176 aa4.8□□□□□ -1.64
VPS39-211ENST00000568755 J3KT08 172 aa4.79□□□□□ -1.64
VPS39-211ENST00000568755 COX6CP09669 75 aa4.79□□□□□ -1.64
VPS39-211ENST00000568755 C21orf62-AS1Q17RA5 79 aa4.79□□□□□ -1.64
VPS39-211ENST00000568755 KRTAP6-3Q3LI67 103 aa4.79□□□□□ -1.64
VPS39-211ENST00000568755 RBM3P98179 157 aaKnown RBP4.78□□□□□ -1.64
VPS39-211ENST00000568755 HSD52Q0P140 79 aa4.78□□□□□ -1.64
VPS39-211ENST00000568755 Q6ZQT0 140 aa4.77□□□□□ -1.65
VPS39-211ENST00000568755 DSCR8Q96T75 97 aa4.77□□□□□ -1.65
VPS39-211ENST00000568755 C8orf17Q9NRJ1 99 aa4.75□□□□□ -1.65
VPS39-211ENST00000568755 C9JAW5 83 aa4.74□□□□□ -1.65
VPS39-211ENST00000568755 NDUFB1O75438 58 aa4.74□□□□□ -1.65
VPS39-211ENST00000568755 KRTAP5-3Q6L8H2 238 aa4.73□□□□□ -1.65
VPS39-211ENST00000568755 IGKV3D-7A0A0C4DH55 119 aa4.72□□□□□ -1.65
VPS39-211ENST00000568755 BAALC-AS2P0C853 105 aa4.71□□□□□ -1.66
VPS39-211ENST00000568755 KRTAP15-1Q3LI76 137 aa4.71□□□□□ -1.66
VPS39-211ENST00000568755 LYRM7Q5U5X0 104 aa4.71□□□□□ -1.66
VPS39-211ENST00000568755 Q6ZVQ6 151 aa4.71□□□□□ -1.66
VPS39-211ENST00000568755 MUC12Q9UKN1 5478 aa4.7□□□□□ -1.66
VPS39-211ENST00000568755 SCGB1C2P0DMR2 95 aa4.7□□□□□ -1.66
VPS39-211ENST00000568755 H1FX-AS1Q4G0G2 97 aa4.7□□□□□ -1.66
VPS39-211ENST00000568755 PYY3Q5JQD4 70 aa4.7□□□□□ -1.66
VPS39-211ENST00000568755 NEBP20929 6669 aa4.7□□□□□ -1.66
VPS39-211ENST00000568755 A0A1B0GW54 56 aa4.68□□□□□ -1.66
VPS39-211ENST00000568755 PRR15Q8IV56 129 aa4.68□□□□□ -1.66
VPS39-211ENST00000568755 LOC110117498A0A087WWA1 95 aa4.67□□□□□ -1.66
VPS39-211ENST00000568755 MMP24-AS1A0A0U1RRL7 71 aa4.67□□□□□ -1.66
VPS39-211ENST00000568755 UQCR10Q9UDW1 63 aa4.67□□□□□ -1.66
VPS39-211ENST00000568755 JMJD7-PLA2G4BH0Y9G9 81 aa4.66□□□□□ -1.66
VPS39-211ENST00000568755 TMEM254Q8TBM7 123 aa4.66□□□□□ -1.66
VPS39-211ENST00000568755 MRPL34Q9BQ48 92 aaKnown RBP4.66□□□□□ -1.66
VPS39-211ENST00000568755 PDE6GP18545 87 aa4.63□□□□□ -1.67
VPS39-211ENST00000568755 C14orf132Q9NPU4 83 aa4.62□□□□□ -1.67
VPS39-211ENST00000568755 hDV103S1A0JD37 113 aa4.61□□□□□ -1.67
VPS39-211ENST00000568755 ATXN8Q156A1 80 aa4.61□□□□□ -1.67
VPS39-211ENST00000568755 IGKV2D-30A0A075B6S6 120 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 K7EQZ3 153 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 IGKV2-30P06310 120 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 MT1BP07438 61 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 NREPQ16612 68 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 Q5W150 140 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 C7orf65Q6ZTY9 151 aa4.6□□□□□ -1.67
VPS39-211ENST00000568755 NDUFS5O43920 106 aa4.59□□□□□ -1.67
VPS39-211ENST00000568755 NAA38Q9BRA0 125 aaKnown RBP4.59□□□□□ -1.67
VPS39-211ENST00000568755 A6NN06 94 aa4.58□□□□□ -1.68
VPS39-211ENST00000568755 C4orf26Q17RF5 130 aa4.55□□□□□ -1.68
VPS39-211ENST00000568755 KRTAP19-8Q3LI54 63 aa4.55□□□□□ -1.68
VPS39-211ENST00000568755 C5orf47Q569G3 176 aa4.54□□□□□ -1.68
VPS39-211ENST00000568755 Q5VV11 94 aa4.54□□□□□ -1.68
VPS39-211ENST00000568755 SPRR2GQ9BYE4 73 aa4.54□□□□□ -1.68
VPS39-211ENST00000568755 FAM236AA0A1B0GUQ0 79 aa4.53□□□□□ -1.68
VPS39-211ENST00000568755 FAM236BA0A1B0GV22 79 aa4.53□□□□□ -1.68
VPS39-211ENST00000568755 KMT2DO14686 5537 aa4.53□□□□□ -1.68
VPS39-211ENST00000568755 M0R143 59 aa4.52□□□□□ -1.69
VPS39-211ENST00000568755 KRTAP10-5P60370 271 aa4.52□□□□□ -1.69
VPS39-211ENST00000568755 KRTAP20-1Q3LI63 56 aa4.52□□□□□ -1.69
VPS39-211ENST00000568755 BPY2O14599 106 aa4.51□□□□□ -1.69
VPS39-211ENST00000568755 KRTAP5-9P26371 169 aa4.51□□□□□ -1.69
VPS39-211ENST00000568755 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
VPS39-211ENST00000568755 HCG22E2RYF7 251 aa4.5□□□□□ -1.69
VPS39-211ENST00000568755 TMA7Q9Y2S6 64 aaKnown RBP4.5□□□□□ -1.69
VPS39-211ENST00000568755 CASC2Q6XLA1 102 aa4.49□□□□□ -1.69
VPS39-211ENST00000568755 Q8N9L7 120 aa4.49□□□□□ -1.69
VPS39-211ENST00000568755 S4R3F8 94 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms