RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DEFB116Q30KQ4 102 aa6.93□□□□□ -1.3
CLK3-224ENST00000568605 MTURNQ8N3F0 131 aa6.93□□□□□ -1.3
CLK3-224ENST00000568605 C20orf166-AS1Q96NR2 134 aa6.92□□□□□ -1.3
CLK3-224ENST00000568605 IGHV6-1A0A0B4J1U7 121 aa6.91□□□□□ -1.3
CLK3-224ENST00000568605 PCP4L1A6NKN8 68 aa6.91□□□□□ -1.3
CLK3-224ENST00000568605 C8orf87E5RJ46 101 aa6.91□□□□□ -1.3
CLK3-224ENST00000568605 FAT4Q6V0I7 4981 aa6.9□□□□□ -1.3
CLK3-224ENST00000568605 A0A1B0GVX0 72 aa6.9□□□□□ -1.3
CLK3-224ENST00000568605 A8MUU9 505 aa6.9□□□□□ -1.3
CLK3-224ENST00000568605 NDUFB1O75438 58 aa6.9□□□□□ -1.3
CLK3-224ENST00000568605 K7EP34 96 aa6.88□□□□□ -1.31
CLK3-224ENST00000568605 NREPQ16612 68 aa6.86□□□□□ -1.31
CLK3-224ENST00000568605 GTF2H5Q6ZYL4 71 aa6.86□□□□□ -1.31
CLK3-224ENST00000568605 KRTAP16-1A8MUX0 517 aa6.84□□□□□ -1.31
CLK3-224ENST00000568605 A8MWP4 228 aa6.84□□□□□ -1.31
CLK3-224ENST00000568605 LCE2AQ5TA79 106 aaPredicted RBP6.84□□□□□ -1.31
CLK3-224ENST00000568605 LOC100996750A0A140TA64 210 aa6.83□□□□□ -1.32
CLK3-224ENST00000568605 KRTAP4-6Q9BYQ5 205 aa6.83□□□□□ -1.32
CLK3-224ENST00000568605 NOTCH2NLQ7Z3S9 236 aa6.82□□□□□ -1.32
CLK3-224ENST00000568605 SMCPP49901 116 aaPredicted RBP6.81□□□□□ -1.32
CLK3-224ENST00000568605 COX6B2Q6YFQ2 88 aa6.8□□□□□ -1.32
CLK3-224ENST00000568605 PRO0461Q9UI25 63 aa6.79□□□□□ -1.32
CLK3-224ENST00000568605 C8orf17Q9NRJ1 99 aa6.78□□□□□ -1.32
CLK3-224ENST00000568605 IGKV3D-7A0A0C4DH55 119 aa6.77□□□□□ -1.33
CLK3-224ENST00000568605 PRR15Q8IV56 129 aa6.77□□□□□ -1.33
CLK3-224ENST00000568605 F8W1H4 67 aa6.76□□□□□ -1.33
CLK3-224ENST00000568605 BPY2O14599 106 aa6.76□□□□□ -1.33
CLK3-224ENST00000568605 KRTAP19-2Q3LHN2 52 aa6.75□□□□□ -1.33
CLK3-224ENST00000568605 Q6ZVQ6 151 aa6.75□□□□□ -1.33
CLK3-224ENST00000568605 UBL5Q9BZL1 73 aa6.74□□□□□ -1.33
CLK3-224ENST00000568605 LCE2CQ5TA81 110 aa6.73□□□□□ -1.33
CLK3-224ENST00000568605 K7EQZ3 153 aa6.72□□□□□ -1.33
CLK3-224ENST00000568605 Q8N9P0 234 aaPredicted RBP6.72□□□□□ -1.33
CLK3-224ENST00000568605 ZCCHC13Q8WW36 166 aaKnown RBP6.72□□□□□ -1.33
CLK3-224ENST00000568605 TMEM254Q8TBM7 123 aa6.71□□□□□ -1.34
CLK3-224ENST00000568605 MMP24-AS1A0A0U1RRL7 71 aa6.7□□□□□ -1.34
CLK3-224ENST00000568605 MRPL34Q9BQ48 92 aaKnown RBP6.7□□□□□ -1.34
CLK3-224ENST00000568605 hDV103S1A0JD37 113 aa6.69□□□□□ -1.34
CLK3-224ENST00000568605 MT1HP80294 61 aa6.69□□□□□ -1.34
CLK3-224ENST00000568605 ETDBQ3ZM63 59 aa6.69□□□□□ -1.34
CLK3-224ENST00000568605 LINC00846Q9NV44 126 aa6.67□□□□□ -1.34
CLK3-224ENST00000568605 M0R2T5 61 aa6.66□□□□□ -1.34
CLK3-224ENST00000568605 NDUFS5O43920 106 aa6.66□□□□□ -1.34
CLK3-224ENST00000568605 RBM12B-AS1Q9P1G2 102 aa6.66□□□□□ -1.34
CLK3-224ENST00000568605 FAM236DA0A1B0GTK5 79 aa6.65□□□□□ -1.34
CLK3-224ENST00000568605 FAM236CP0DP71 79 aa6.65□□□□□ -1.34
CLK3-224ENST00000568605 WFDC13Q8IUB5 93 aa6.63□□□□□ -1.35
CLK3-224ENST00000568605 CASC2Q6XLA1 102 aa6.62□□□□□ -1.35
CLK3-224ENST00000568605 Q8N9L7 120 aa6.62□□□□□ -1.35
CLK3-224ENST00000568605 HRES1P13985 223 aa6.6□□□□□ -1.35
CLK3-224ENST00000568605 SPINK7P58062 85 aa6.6□□□□□ -1.35
CLK3-224ENST00000568605 ACYP1P07311 99 aa6.59□□□□□ -1.35
CLK3-224ENST00000568605 CXCL6P80162 114 aa6.59□□□□□ -1.35
CLK3-224ENST00000568605 HCG22E2RYF7 251 aa6.58□□□□□ -1.36
CLK3-224ENST00000568605 FLGP20930 4061 aaPredicted RBP6.57□□□□□ -1.36
CLK3-224ENST00000568605 FAM240AA0A1B0GVK7 77 aa6.56□□□□□ -1.36
CLK3-224ENST00000568605 MPLKIPQ8TAP9 179 aa6.56□□□□□ -1.36
CLK3-224ENST00000568605 KRTAP10-6P60371 365 aaPredicted RBP6.54□□□□□ -1.36
CLK3-224ENST00000568605 KRTAP9-2Q9BYQ4 174 aa6.54□□□□□ -1.36
CLK3-224ENST00000568605 A0A1B0GV90 55 aa6.52□□□□□ -1.37
CLK3-224ENST00000568605 LORP23490 312 aaPredicted RBP6.52□□□□□ -1.37
CLK3-224ENST00000568605 ATP5EP2Q5VTU8 51 aa6.52□□□□□ -1.37
CLK3-224ENST00000568605 C7orf65Q6ZTY9 151 aa6.52□□□□□ -1.37
CLK3-224ENST00000568605 IGKV2D-30A0A075B6S6 120 aa6.49□□□□□ -1.37
CLK3-224ENST00000568605 IGKV2-30P06310 120 aa6.49□□□□□ -1.37
CLK3-224ENST00000568605 TP53AIP1Q9HCN2 124 aa6.48□□□□□ -1.37
CLK3-224ENST00000568605 Q5W150 140 aa6.47□□□□□ -1.37
CLK3-224ENST00000568605 SVIPQ8NHG7 77 aa6.46□□□□□ -1.38
CLK3-224ENST00000568605 J3QR89 54 aa6.43□□□□□ -1.38
CLK3-224ENST00000568605 HIST1H4AP62805 103 aaKnown RBP6.42□□□□□ -1.38
CLK3-224ENST00000568605 LINC00643Q86TS7 51 aa6.42□□□□□ -1.38
CLK3-224ENST00000568605 H1FX-AS1Q4G0G2 97 aa6.37□□□□□ -1.39
CLK3-224ENST00000568605 TRAV22A0A0B4J277 110 aa6.35□□□□□ -1.39
CLK3-224ENST00000568605 C4orf26Q17RF5 130 aa6.33□□□□□ -1.4
CLK3-224ENST00000568605 KRTAP9-8Q9BYQ0 159 aa6.32□□□□□ -1.4
CLK3-224ENST00000568605 KRTAP9-6A0A140TA67 174 aa6.31□□□□□ -1.4
CLK3-224ENST00000568605 A0A087WVE0 104 aa6.3□□□□□ -1.4
CLK3-224ENST00000568605 LOC101927531A0A1B0GV80 90 aa6.3□□□□□ -1.4
CLK3-224ENST00000568605 UQCRQO14949 82 aa6.3□□□□□ -1.4
CLK3-224ENST00000568605 ATOX1O00244 68 aa6.29□□□□□ -1.4
CLK3-224ENST00000568605 MT2AP02795 61 aa6.28□□□□□ -1.4
CLK3-224ENST00000568605 H0Y9P7 68 aa6.26□□□□□ -1.41
CLK3-224ENST00000568605 C1orf64Q8NEQ6 169 aa6.26□□□□□ -1.41
CLK3-224ENST00000568605 CYP4F30PQ9H0H9 118 aa6.26□□□□□ -1.41
CLK3-224ENST00000568605 KRTAP10-10P60014 251 aa6.24□□□□□ -1.41
CLK3-224ENST00000568605 K7ERU9 68 aa6.23□□□□□ -1.41
CLK3-224ENST00000568605 MT1FP04733 61 aa6.22□□□□□ -1.41
CLK3-224ENST00000568605 S4R3F8 94 aa6.22□□□□□ -1.41
CLK3-224ENST00000568605 MP68P56378 58 aa6.21□□□□□ -1.42
CLK3-224ENST00000568605 CRCT1Q9UGL9 99 aa6.21□□□□□ -1.42
CLK3-224ENST00000568605 SCGB1A1P11684 91 aa6.18□□□□□ -1.42
CLK3-224ENST00000568605 OCR1Q9BZK8 76 aa6.18□□□□□ -1.42
CLK3-224ENST00000568605 KRTAP3-1Q9BYR8 98 aa6.17□□□□□ -1.42
CLK3-224ENST00000568605 LINC00208Q96KT6 92 aa6.16□□□□□ -1.42
CLK3-224ENST00000568605 IMUPQ9GZP8 106 aa6.16□□□□□ -1.42
CLK3-224ENST00000568605 C5orf47Q569G3 176 aa6.15□□□□□ -1.42
CLK3-224ENST00000568605 KRTAP4-8Q9BYQ9 185 aa6.15□□□□□ -1.42
CLK3-224ENST00000568605 FSIP2Q5CZC0 6907 aa6.14□□□□□ -1.43
CLK3-224ENST00000568605 CSAG1Q6PB30 78 aa6.14□□□□□ -1.43
CLK3-224ENST00000568605 H3BPC8 53 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms