RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LINC00472Q9H8W2 130 aa9.35□□□□□ -0.91
CLN3-217ENST00000565354 SMCPP49901 116 aaPredicted RBP9.33□□□□□ -0.92
CLN3-217ENST00000565354 J3KT08 172 aa9.31□□□□□ -0.92
CLN3-217ENST00000565354 PRO0461Q9UI25 63 aa9.31□□□□□ -0.92
CLN3-217ENST00000565354 DSCR10P59022 87 aa9.3□□□□□ -0.92
CLN3-217ENST00000565354 RPL37P61927 97 aaKnown RBP9.3□□□□□ -0.92
CLN3-217ENST00000565354 NREPQ16612 68 aa9.29□□□□□ -0.92
CLN3-217ENST00000565354 IGHV6-1A0A0B4J1U7 121 aa9.28□□□□□ -0.92
CLN3-217ENST00000565354 LINC00313P59037 77 aa9.28□□□□□ -0.92
CLN3-217ENST00000565354 PCOTHQ58A44 107 aa9.28□□□□□ -0.92
CLN3-217ENST00000565354 F8W1H4 67 aa9.27□□□□□ -0.93
CLN3-217ENST00000565354 NDUFB1O75438 58 aa9.26□□□□□ -0.93
CLN3-217ENST00000565354 A0A1B0GVX0 72 aa9.24□□□□□ -0.93
CLN3-217ENST00000565354 LCE2CQ5TA81 110 aa9.23□□□□□ -0.93
CLN3-217ENST00000565354 Q75L30 129 aa9.23□□□□□ -0.93
CLN3-217ENST00000565354 C8orf87E5RJ46 101 aa9.22□□□□□ -0.93
CLN3-217ENST00000565354 ATP11AUNQ6ZP68 121 aa9.22□□□□□ -0.93
CLN3-217ENST00000565354 ETDBQ3ZM63 59 aa9.19□□□□□ -0.94
CLN3-217ENST00000565354 A8MWP4 228 aa9.18□□□□□ -0.94
CLN3-217ENST00000565354 C20orf166-AS1Q96NR2 134 aa9.18□□□□□ -0.94
CLN3-217ENST00000565354 A8MUU9 505 aa9.17□□□□□ -0.94
CLN3-217ENST00000565354 NOTCH2NLQ7Z3S9 236 aa9.17□□□□□ -0.94
CLN3-217ENST00000565354 MT1HP80294 61 aa9.15□□□□□ -0.94
CLN3-217ENST00000565354 KRTAP19-2Q3LHN2 52 aa9.15□□□□□ -0.94
CLN3-217ENST00000565354 BPY2O14599 106 aa9.14□□□□□ -0.95
CLN3-217ENST00000565354 Q6ZVQ6 151 aa9.14□□□□□ -0.95
CLN3-217ENST00000565354 IGKV3D-7A0A0C4DH55 119 aa9.13□□□□□ -0.95
CLN3-217ENST00000565354 KRTAP16-1A8MUX0 517 aa9.13□□□□□ -0.95
CLN3-217ENST00000565354 UBL5Q9BZL1 73 aa9.13□□□□□ -0.95
CLN3-217ENST00000565354 C8orf17Q9NRJ1 99 aa9.12□□□□□ -0.95
CLN3-217ENST00000565354 A0A1B0GV90 55 aa9.11□□□□□ -0.95
CLN3-217ENST00000565354 PRR15Q8IV56 129 aa9.11□□□□□ -0.95
CLN3-217ENST00000565354 LINC00846Q9NV44 126 aa9.1□□□□□ -0.95
CLN3-217ENST00000565354 LORP23490 312 aaPredicted RBP9.08□□□□□ -0.96
CLN3-217ENST00000565354 K7EQZ3 153 aa9.07□□□□□ -0.96
CLN3-217ENST00000565354 KRTAP10-6P60371 365 aaPredicted RBP9.06□□□□□ -0.96
CLN3-217ENST00000565354 MMP24-AS1A0A0U1RRL7 71 aa9.02□□□□□ -0.97
CLN3-217ENST00000565354 Q8N9L7 120 aa9□□□□□ -0.97
CLN3-217ENST00000565354 TMEM254Q8TBM7 123 aa9□□□□□ -0.97
CLN3-217ENST00000565354 hDV103S1A0JD37 113 aa8.99□□□□□ -0.97
CLN3-217ENST00000565354 Q8N9P0 234 aaPredicted RBP8.99□□□□□ -0.97
CLN3-217ENST00000565354 MRPL34Q9BQ48 92 aaKnown RBP8.99□□□□□ -0.97
CLN3-217ENST00000565354 ACYP1P07311 99 aa8.98□□□□□ -0.97
CLN3-217ENST00000565354 KRTAP9-7A8MTY7 169 aa8.96□□□□□ -0.98
CLN3-217ENST00000565354 NDUFS5O43920 106 aa8.96□□□□□ -0.98
CLN3-217ENST00000565354 ZCCHC13Q8WW36 166 aaKnown RBP8.96□□□□□ -0.98
CLN3-217ENST00000565354 WFDC13Q8IUB5 93 aa8.95□□□□□ -0.98
CLN3-217ENST00000565354 FLGP20930 4061 aaPredicted RBP8.95□□□□□ -0.98
CLN3-217ENST00000565354 M0R2T5 61 aa8.94□□□□□ -0.98
CLN3-217ENST00000565354 CASC2Q6XLA1 102 aa8.94□□□□□ -0.98
CLN3-217ENST00000565354 COX6B2Q6YFQ2 88 aa8.94□□□□□ -0.98
CLN3-217ENST00000565354 FAM240AA0A1B0GVK7 77 aa8.92□□□□□ -0.98
CLN3-217ENST00000565354 CXCL6P80162 114 aa8.92□□□□□ -0.98
CLN3-217ENST00000565354 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.91□□□□□ -0.98
CLN3-217ENST00000565354 HCG22E2RYF7 251 aa8.89□□□□□ -0.99
CLN3-217ENST00000565354 J3QR89 54 aa8.84□□□□□ -0.99
CLN3-217ENST00000565354 ATP5EP2Q5VTU8 51 aa8.83□□□□□ -1
CLN3-217ENST00000565354 FAM236DA0A1B0GTK5 79 aa8.81□□□□□ -1
CLN3-217ENST00000565354 FAM236CP0DP71 79 aa8.81□□□□□ -1
CLN3-217ENST00000565354 SPINK7P58062 85 aa8.81□□□□□ -1
CLN3-217ENST00000565354 RBM12B-AS1Q9P1G2 102 aa8.81□□□□□ -1
CLN3-217ENST00000565354 HRES1P13985 223 aa8.77□□□□□ -1.01
CLN3-217ENST00000565354 HIST1H4AP62805 103 aaKnown RBP8.77□□□□□ -1.01
CLN3-217ENST00000565354 LINC00643Q86TS7 51 aa8.77□□□□□ -1.01
CLN3-217ENST00000565354 Q5W150 140 aa8.72□□□□□ -1.01
CLN3-217ENST00000565354 SSPOA2VEC9 5147 aa8.71□□□□□ -1.01
CLN3-217ENST00000565354 IGKV2D-30A0A075B6S6 120 aa8.71□□□□□ -1.02
CLN3-217ENST00000565354 IGKV2-30P06310 120 aa8.71□□□□□ -1.02
CLN3-217ENST00000565354 TP53AIP1Q9HCN2 124 aa8.71□□□□□ -1.02
CLN3-217ENST00000565354 C7orf65Q6ZTY9 151 aa8.7□□□□□ -1.02
CLN3-217ENST00000565354 USH2AO75445 5202 aa8.7□□□□□ -1.02
CLN3-217ENST00000565354 MPLKIPQ8TAP9 179 aa8.69□□□□□ -1.02
CLN3-217ENST00000565354 A0A087WVE0 104 aa8.63□□□□□ -1.03
CLN3-217ENST00000565354 FCGBPQ9Y6R7 5405 aaPredicted RBP8.63□□□□□ -1.03
CLN3-217ENST00000565354 K7ERU9 68 aa8.62□□□□□ -1.03
CLN3-217ENST00000565354 KRTAP9-8Q9BYQ0 159 aa8.58□□□□□ -1.04
CLN3-217ENST00000565354 TRAV22A0A0B4J277 110 aa8.56□□□□□ -1.04
CLN3-217ENST00000565354 UQCRQO14949 82 aa8.54□□□□□ -1.04
CLN3-217ENST00000565354 C4orf26Q17RF5 130 aa8.5□□□□□ -1.05
CLN3-217ENST00000565354 H0Y9P7 68 aa8.49□□□□□ -1.05
CLN3-217ENST00000565354 KRTAP19-1Q8IUB9 90 aa8.49□□□□□ -1.05
CLN3-217ENST00000565354 LOC101927531A0A1B0GV80 90 aa8.48□□□□□ -1.05
CLN3-217ENST00000565354 H1FX-AS1Q4G0G2 97 aa8.48□□□□□ -1.05
CLN3-217ENST00000565354 ATOX1O00244 68 aa8.47□□□□□ -1.05
CLN3-217ENST00000565354 SCGB1A1P11684 91 aa8.47□□□□□ -1.05
CLN3-217ENST00000565354 CYP4F30PQ9H0H9 118 aa8.44□□□□□ -1.06
CLN3-217ENST00000565354 MT-ATP8P03928 68 aa8.43□□□□□ -1.06
CLN3-217ENST00000565354 IMUPQ9GZP8 106 aa8.43□□□□□ -1.06
CLN3-217ENST00000565354 MACF1Q9UPN3 7388 aaKnown RBP8.43□□□□□ -1.06
CLN3-217ENST00000565354 SYNE2Q8WXH0 6885 aaKnown RBP8.41□□□□□ -1.06
CLN3-217ENST00000565354 LCE2BO14633 110 aa8.41□□□□□ -1.06
CLN3-217ENST00000565354 MP68P56378 58 aa8.41□□□□□ -1.06
CLN3-217ENST00000565354 MT2AP02795 61 aa8.4□□□□□ -1.06
CLN3-217ENST00000565354 C1orf64Q8NEQ6 169 aa8.4□□□□□ -1.06
CLN3-217ENST00000565354 OCR1Q9BZK8 76 aa8.4□□□□□ -1.06
CLN3-217ENST00000565354 LINC00208Q96KT6 92 aa8.37□□□□□ -1.07
CLN3-217ENST00000565354 C5orf47Q569G3 176 aa8.36□□□□□ -1.07
CLN3-217ENST00000565354 MT1FP04733 61 aa8.33□□□□□ -1.08
CLN3-217ENST00000565354 KRTAP9-3Q9BYQ3 159 aa8.33□□□□□ -1.08
CLN3-217ENST00000565354 FAM236AA0A1B0GUQ0 79 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms