RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 SSBP3-AS1Q7Z2R9 100 aa6.34□□□□□ -1.39
RNF40-204ENST00000563683 ANK3Q12955 4377 aaKnown RBP6.34□□□□□ -1.39
RNF40-204ENST00000563683 SMR3BP02814 79 aaPredicted RBP6.33□□□□□ -1.4
RNF40-204ENST00000563683 ACYP2P14621 99 aa6.31□□□□□ -1.4
RNF40-204ENST00000563683 PLAC8Q9NZF1 115 aa6.31□□□□□ -1.4
RNF40-204ENST00000563683 Q96NJ1 140 aa6.3□□□□□ -1.4
RNF40-204ENST00000563683 TGP01266 2768 aa6.3□□□□□ -1.4
RNF40-204ENST00000563683 Q6ZR54 194 aa6.3□□□□□ -1.4
RNF40-204ENST00000563683 FAM229AH3BQW9 127 aa6.29□□□□□ -1.4
RNF40-204ENST00000563683 C8orf87E5RJ46 101 aa6.28□□□□□ -1.4
RNF40-204ENST00000563683 ASB16-AS1Q495Z4 193 aa6.27□□□□□ -1.41
RNF40-204ENST00000563683 HRES1P13985 223 aa6.27□□□□□ -1.41
RNF40-204ENST00000563683 SPINK7P58062 85 aa6.26□□□□□ -1.41
RNF40-204ENST00000563683 A0A1B0GU69 56 aa6.25□□□□□ -1.41
RNF40-204ENST00000563683 Q6ZRN7 208 aaPredicted RBP6.25□□□□□ -1.41
RNF40-204ENST00000563683 PRR26Q8N8Z3 221 aa6.24□□□□□ -1.41
RNF40-204ENST00000563683 KRTAP10-2P60368 255 aa6.23□□□□□ -1.41
RNF40-204ENST00000563683 C9orf92A6NGG3 77 aa6.2□□□□□ -1.42
RNF40-204ENST00000563683 LINC00304Q8N9R0 145 aa6.19□□□□□ -1.42
RNF40-204ENST00000563683 SRRM2Q9UQ35 2752 aaKnown RBP6.19□□□□□ -1.42
RNF40-204ENST00000563683 A0A087X002 238 aa6.19□□□□□ -1.42
RNF40-204ENST00000563683 NOTCH2NLQ7Z3S9 236 aa6.19□□□□□ -1.42
RNF40-204ENST00000563683 LINC00483Q53H64 154 aa6.17□□□□□ -1.42
RNF40-204ENST00000563683 DMBT1Q9UGM3 2413 aaPredicted RBP6.16□□□□□ -1.42
RNF40-204ENST00000563683 KRTAP10-1P60331 282 aa6.16□□□□□ -1.42
RNF40-204ENST00000563683 KRTAP13-1Q8IUC0 172 aa6.15□□□□□ -1.42
RNF40-204ENST00000563683 Q8N1X5 172 aa6.13□□□□□ -1.43
RNF40-204ENST00000563683 K7ERS5 55 aa6.09□□□□□ -1.43
RNF40-204ENST00000563683 PRAC1Q96KF2 57 aa6.09□□□□□ -1.43
RNF40-204ENST00000563683 Q5W150 140 aa6.09□□□□□ -1.43
RNF40-204ENST00000563683 DMAC1Q96GE9 116 aa6.08□□□□□ -1.44
RNF40-204ENST00000563683 LINC01554Q52M75 96 aa6.08□□□□□ -1.44
RNF40-204ENST00000563683 SPATA8Q6RVD6 105 aa6.07□□□□□ -1.44
RNF40-204ENST00000563683 UQCR11O14957 56 aa6.06□□□□□ -1.44
RNF40-204ENST00000563683 DNAH1Q9P2D7 4330 aa6.06□□□□□ -1.44
RNF40-204ENST00000563683 CSMD3Q7Z407 3707 aa6.05□□□□□ -1.44
RNF40-204ENST00000563683 MIR22HGQ0VDD5 57 aa6.05□□□□□ -1.44
RNF40-204ENST00000563683 KRTAP13-3Q3SY46 172 aa6.05□□□□□ -1.44
RNF40-204ENST00000563683 FBN3Q75N90 2809 aa6.04□□□□□ -1.44
RNF40-204ENST00000563683 FLG2Q5D862 2391 aaPredicted RBP6.03□□□□□ -1.44
RNF40-204ENST00000563683 ADM2Q7Z4H4 148 aa6.01□□□□□ -1.45
RNF40-204ENST00000563683 COL7A1Q02388 2944 aa6.01□□□□□ -1.45
RNF40-204ENST00000563683 KRTAP13-2Q52LG2 175 aa6□□□□□ -1.45
RNF40-204ENST00000563683 MEGF8Q7Z7M0 2845 aa5.95□□□□□ -1.46
RNF40-204ENST00000563683 J3QL48 77 aa5.92□□□□□ -1.46
RNF40-204ENST00000563683 CSAG1Q6PB30 78 aa5.91□□□□□ -1.46
RNF40-204ENST00000563683 ALMS1Q8TCU4 4167 aa5.9□□□□□ -1.47
RNF40-204ENST00000563683 ANK2Q01484 3957 aa5.89□□□□□ -1.47
RNF40-204ENST00000563683 H3BS24 57 aa5.89□□□□□ -1.47
RNF40-204ENST00000563683 DNAH10Q8IVF4 4471 aa5.89□□□□□ -1.47
RNF40-204ENST00000563683 CMYA5Q8N3K9 4069 aa5.87□□□□□ -1.47
RNF40-204ENST00000563683 HUWE1Q7Z6Z7 4374 aaKnown RBP5.85□□□□□ -1.47
RNF40-204ENST00000563683 Q5VSD8 79 aa5.84□□□□□ -1.47
RNF40-204ENST00000563683 Q6ZSA8 131 aa5.84□□□□□ -1.48
RNF40-204ENST00000563683 DNAH3Q8TD57 4116 aa5.82□□□□□ -1.48
RNF40-204ENST00000563683 A0A0D9SG42 100 aa5.82□□□□□ -1.48
RNF40-204ENST00000563683 A0A1B0GU33 70 aa5.82□□□□□ -1.48
RNF40-204ENST00000563683 KRTAP1-4P0C5Y4 121 aa5.82□□□□□ -1.48
RNF40-204ENST00000563683 DNAH9Q9NYC9 4486 aa5.8□□□□□ -1.48
RNF40-204ENST00000563683 KRTAP16-1A8MUX0 517 aa5.79□□□□□ -1.48
RNF40-204ENST00000563683 KRTAP21-3Q3LHN1 58 aa5.77□□□□□ -1.49
RNF40-204ENST00000563683 COX6B2Q6YFQ2 88 aa5.76□□□□□ -1.49
RNF40-204ENST00000563683 LYSTQ99698 3801 aa5.75□□□□□ -1.49
RNF40-204ENST00000563683 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
RNF40-204ENST00000563683 A8MUU9 505 aa5.73□□□□□ -1.49
RNF40-204ENST00000563683 RPS29P62273 56 aaKnown RBP5.7□□□□□ -1.5
RNF40-204ENST00000563683 DNAH8Q96JB1 4490 aa5.7□□□□□ -1.5
RNF40-204ENST00000563683 SPINT4Q6UDR6 99 aa5.69□□□□□ -1.5
RNF40-204ENST00000563683 H0YAA0 97 aa5.69□□□□□ -1.5
RNF40-204ENST00000563683 ROMO1P60602 79 aa5.68□□□□□ -1.5
RNF40-204ENST00000563683 CRIPTQ9P021 101 aa5.68□□□□□ -1.5
RNF40-204ENST00000563683 DYNC2H1Q8NCM8 4307 aaKnown RBP5.66□□□□□ -1.5
RNF40-204ENST00000563683 S4R3F8 94 aa5.65□□□□□ -1.5
RNF40-204ENST00000563683 H1FX-AS1Q4G0G2 97 aa5.65□□□□□ -1.51
RNF40-204ENST00000563683 FRAS1Q86XX4 4008 aa5.62□□□□□ -1.51
RNF40-204ENST00000563683 PLECQ15149 4684 aaKnown RBP5.62□□□□□ -1.51
RNF40-204ENST00000563683 C20orf166-AS1Q96NR2 134 aa5.62□□□□□ -1.51
RNF40-204ENST00000563683 DNAH7Q8WXX0 4024 aa5.59□□□□□ -1.52
RNF40-204ENST00000563683 DNAH17Q9UFH2 4485 aa5.57□□□□□ -1.52
RNF40-204ENST00000563683 HECTD4Q9Y4D8 3996 aa5.55□□□□□ -1.52
RNF40-204ENST00000563683 VPS13DQ5THJ4 4388 aa5.55□□□□□ -1.52
RNF40-204ENST00000563683 RPL37P61927 97 aaKnown RBP5.55□□□□□ -1.52
RNF40-204ENST00000563683 SEC61BP60468 96 aaKnown RBP5.53□□□□□ -1.52
RNF40-204ENST00000563683 KRTAP3-1Q9BYR8 98 aa5.49□□□□□ -1.53
RNF40-204ENST00000563683 STARD9Q9P2P6 4700 aa5.48□□□□□ -1.53
RNF40-204ENST00000563683 A0A1B0GVY2 172 aa5.48□□□□□ -1.53
RNF40-204ENST00000563683 DNAH11Q96DT5 4516 aa5.47□□□□□ -1.53
RNF40-204ENST00000563683 R4GN34 69 aa5.47□□□□□ -1.53
RNF40-204ENST00000563683 XP32Q5T750 250 aa5.46□□□□□ -1.53
RNF40-204ENST00000563683 DNHD1Q96M86 4753 aa5.45□□□□□ -1.54
RNF40-204ENST00000563683 DNAH2Q9P225 4427 aa5.45□□□□□ -1.54
RNF40-204ENST00000563683 P0C880 135 aa5.44□□□□□ -1.54
RNF40-204ENST00000563683 PRKDCP78527 4128 aaKnown RBP5.44□□□□□ -1.54
RNF40-204ENST00000563683 M0R2T5 61 aa5.43□□□□□ -1.54
RNF40-204ENST00000563683 M0QZ58 72 aa5.42□□□□□ -1.54
RNF40-204ENST00000563683 KMT2AQ03164 3969 aa5.41□□□□□ -1.54
RNF40-204ENST00000563683 CAMK2N1Q7Z7J9 78 aa5.41□□□□□ -1.54
RNF40-204ENST00000563683 KRTAP10-8P60410 259 aa5.38□□□□□ -1.55
RNF40-204ENST00000563683 DNAH5Q8TE73 4624 aa5.34□□□□□ -1.55
RNF40-204ENST00000563683 TPRXLQ17RH7 258 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms