RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PMAIP1Q13794 54 aa5.41□□□□□ -1.54
VPS39-205ENST00000562258 PRR15LQ9BU68 103 aa5.39□□□□□ -1.55
VPS39-205ENST00000562258 KRTAP13-2Q52LG2 175 aa5.39□□□□□ -1.55
VPS39-205ENST00000562258 RBM12B-AS1Q9P1G2 102 aa5.39□□□□□ -1.55
VPS39-205ENST00000562258 LOC101927531A0A1B0GV80 90 aa5.38□□□□□ -1.55
VPS39-205ENST00000562258 LINC00483Q53H64 154 aa5.37□□□□□ -1.55
VPS39-205ENST00000562258 LINC01600Q96MT4 127 aa5.36□□□□□ -1.55
VPS39-205ENST00000562258 LINC00472Q9H8W2 130 aa5.36□□□□□ -1.55
VPS39-205ENST00000562258 ACYP2P14621 99 aa5.34□□□□□ -1.55
VPS39-205ENST00000562258 KRTAP13-1Q8IUC0 172 aa5.33□□□□□ -1.56
VPS39-205ENST00000562258 OXTP01178 125 aa5.33□□□□□ -1.56
VPS39-205ENST00000562258 SEC61BP60468 96 aaKnown RBP5.33□□□□□ -1.56
VPS39-205ENST00000562258 CYSTM1Q9H1C7 97 aa5.32□□□□□ -1.56
VPS39-205ENST00000562258 H7BZZ5 65 aa5.31□□□□□ -1.56
VPS39-205ENST00000562258 KLKP1Q107X0 134 aa5.31□□□□□ -1.56
VPS39-205ENST00000562258 MMP24-AS1A0A0U1RRL7 71 aa5.31□□□□□ -1.56
VPS39-205ENST00000562258 CSMD3Q7Z407 3707 aa5.3□□□□□ -1.56
VPS39-205ENST00000562258 A0A1B0GVY2 172 aa5.3□□□□□ -1.56
VPS39-205ENST00000562258 SPINK7P58062 85 aa5.3□□□□□ -1.56
VPS39-205ENST00000562258 NOTCH2NLQ7Z3S9 236 aa5.29□□□□□ -1.56
VPS39-205ENST00000562258 H3BPC8 53 aa5.29□□□□□ -1.56
VPS39-205ENST00000562258 K7ERS5 55 aa5.29□□□□□ -1.56
VPS39-205ENST00000562258 ZCCHC13Q8WW36 166 aaKnown RBP5.28□□□□□ -1.56
VPS39-205ENST00000562258 Q8N9P0 234 aaPredicted RBP5.28□□□□□ -1.56
VPS39-205ENST00000562258 H3BS24 57 aa5.26□□□□□ -1.57
VPS39-205ENST00000562258 FP248Q71RG6 208 aaPredicted RBP5.26□□□□□ -1.57
VPS39-205ENST00000562258 LINC01554Q52M75 96 aa5.26□□□□□ -1.57
VPS39-205ENST00000562258 KRTAP1-4P0C5Y4 121 aa5.25□□□□□ -1.57
VPS39-205ENST00000562258 A8MUN3 132 aa5.24□□□□□ -1.57
VPS39-205ENST00000562258 A0A1B0GU69 56 aa5.24□□□□□ -1.57
VPS39-205ENST00000562258 OCR1Q9BZK8 76 aa5.21□□□□□ -1.57
VPS39-205ENST00000562258 HRES1P13985 223 aa5.21□□□□□ -1.58
VPS39-205ENST00000562258 Q5W150 140 aa5.2□□□□□ -1.58
VPS39-205ENST00000562258 COA5Q86WW8 74 aa5.2□□□□□ -1.58
VPS39-205ENST00000562258 Q5XG85 94 aa5.19□□□□□ -1.58
VPS39-205ENST00000562258 HUWE1Q7Z6Z7 4374 aaKnown RBP5.18□□□□□ -1.58
VPS39-205ENST00000562258 CYP4F30PQ9H0H9 118 aa5.16□□□□□ -1.58
VPS39-205ENST00000562258 CSAG1Q6PB30 78 aa5.12□□□□□ -1.59
VPS39-205ENST00000562258 RPS29P62273 56 aaKnown RBP5.12□□□□□ -1.59
VPS39-205ENST00000562258 A0A0D9SG42 100 aa5.12□□□□□ -1.59
VPS39-205ENST00000562258 DNAH9Q9NYC9 4486 aa5.11□□□□□ -1.59
VPS39-205ENST00000562258 ASB16-AS1Q495Z4 193 aa5.09□□□□□ -1.59
VPS39-205ENST00000562258 KRTAP4-5Q9BYR2 181 aa5.08□□□□□ -1.6
VPS39-205ENST00000562258 PRKDCP78527 4128 aaKnown RBP5.08□□□□□ -1.6
VPS39-205ENST00000562258 KRTAP29-1A8MX34 341 aaPredicted RBP5.08□□□□□ -1.6
VPS39-205ENST00000562258 S4R3F8 94 aa5.07□□□□□ -1.6
VPS39-205ENST00000562258 KRTAP10-8P60410 259 aa5.06□□□□□ -1.6
VPS39-205ENST00000562258 RPL37P61927 97 aaKnown RBP5.06□□□□□ -1.6
VPS39-205ENST00000562258 SPINT4Q6UDR6 99 aa5.06□□□□□ -1.6
VPS39-205ENST00000562258 XP32Q5T750 250 aa5.04□□□□□ -1.6
VPS39-205ENST00000562258 Q75L30 129 aa5.04□□□□□ -1.6
VPS39-205ENST00000562258 SPANXA2-OT1Q8N9U9 137 aa5.02□□□□□ -1.61
VPS39-205ENST00000562258 Q1T7F1 81 aa5.01□□□□□ -1.61
VPS39-205ENST00000562258 KTN1-AS1Q86SY8 53 aa5.01□□□□□ -1.61
VPS39-205ENST00000562258 PLECQ15149 4684 aaKnown RBP5□□□□□ -1.61
VPS39-205ENST00000562258 UQCR11O14957 56 aa4.99□□□□□ -1.61
VPS39-205ENST00000562258 C20orf166-AS1Q96NR2 134 aa4.99□□□□□ -1.61
VPS39-205ENST00000562258 R4GN34 69 aa4.98□□□□□ -1.61
VPS39-205ENST00000562258 TPRXLQ17RH7 258 aa4.97□□□□□ -1.61
VPS39-205ENST00000562258 CAMK2N1Q7Z7J9 78 aa4.97□□□□□ -1.61
VPS39-205ENST00000562258 A8MUU9 505 aa4.96□□□□□ -1.62
VPS39-205ENST00000562258 KRTAP13-3Q3SY46 172 aa4.95□□□□□ -1.62
VPS39-205ENST00000562258 MIR22HGQ0VDD5 57 aa4.94□□□□□ -1.62
VPS39-205ENST00000562258 DNAH5Q8TE73 4624 aa4.94□□□□□ -1.62
VPS39-205ENST00000562258 KIAA1109Q2LD37 5005 aa4.94□□□□□ -1.62
VPS39-205ENST00000562258 CDC42SE1Q9NRR8 79 aa4.94□□□□□ -1.62
VPS39-205ENST00000562258 H1FX-AS1Q4G0G2 97 aa4.93□□□□□ -1.62
VPS39-205ENST00000562258 LCA10Q71F78 164 aa4.93□□□□□ -1.62
VPS39-205ENST00000562258 A0A1B0GU33 70 aa4.92□□□□□ -1.62
VPS39-205ENST00000562258 DNAH11Q96DT5 4516 aa4.92□□□□□ -1.62
VPS39-205ENST00000562258 ANK2Q01484 3957 aa4.92□□□□□ -1.62
VPS39-205ENST00000562258 STARD9Q9P2P6 4700 aa4.91□□□□□ -1.62
VPS39-205ENST00000562258 Q5VV11 94 aa4.9□□□□□ -1.62
VPS39-205ENST00000562258 M0QZ58 72 aa4.9□□□□□ -1.62
VPS39-205ENST00000562258 FAT1Q14517 4588 aa4.9□□□□□ -1.63
VPS39-205ENST00000562258 ADM2Q7Z4H4 148 aa4.89□□□□□ -1.63
VPS39-205ENST00000562258 DMAC1Q96GE9 116 aa4.89□□□□□ -1.63
VPS39-205ENST00000562258 MT1HL1P0DM35 61 aa4.88□□□□□ -1.63
VPS39-205ENST00000562258 A8MU10 97 aa4.88□□□□□ -1.63
VPS39-205ENST00000562258 RYR1P21817 5038 aa4.87□□□□□ -1.63
VPS39-205ENST00000562258 DNAH1Q9P2D7 4330 aa4.86□□□□□ -1.63
VPS39-205ENST00000562258 A0A0A0MQY5 61 aa4.85□□□□□ -1.63
VPS39-205ENST00000562258 LINC01558Q9Y6Z2 57 aa4.85□□□□□ -1.63
VPS39-205ENST00000562258 PRAC1Q96KF2 57 aa4.84□□□□□ -1.63
VPS39-205ENST00000562258 HYDINQ4G0P3 5121 aa4.84□□□□□ -1.63
VPS39-205ENST00000562258 KRTAP10-4P60372 401 aaPredicted RBP4.83□□□□□ -1.64
VPS39-205ENST00000562258 RYR3Q15413 4870 aa4.82□□□□□ -1.64
VPS39-205ENST00000562258 KRTAP16-1A8MUX0 517 aa4.82□□□□□ -1.64
VPS39-205ENST00000562258 LYSTQ99698 3801 aa4.81□□□□□ -1.64
VPS39-205ENST00000562258 DNAH10Q8IVF4 4471 aa4.8□□□□□ -1.64
VPS39-205ENST00000562258 SPATA8Q6RVD6 105 aa4.8□□□□□ -1.64
VPS39-205ENST00000562258 DYNC1H1Q14204 4646 aaKnown RBP4.8□□□□□ -1.64
VPS39-205ENST00000562258 CRIPTQ9P021 101 aa4.79□□□□□ -1.64
VPS39-205ENST00000562258 KMT2AQ03164 3969 aa4.77□□□□□ -1.65
VPS39-205ENST00000562258 KRTAP10-10P60014 251 aa4.75□□□□□ -1.65
VPS39-205ENST00000562258 LRP1BQ9NZR2 4599 aa4.75□□□□□ -1.65
VPS39-205ENST00000562258 VPS13DQ5THJ4 4388 aa4.75□□□□□ -1.65
VPS39-205ENST00000562258 PLAC4Q8WY50 150 aa4.75□□□□□ -1.65
VPS39-205ENST00000562258 CMYA5Q8N3K9 4069 aa4.74□□□□□ -1.65
VPS39-205ENST00000562258 KMT2CQ8NEZ4 4911 aaKnown RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms