RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 REG3GQ6UW15 175 aa8.12□□□□□ -1.11
CLK3-206ENST00000562078 IGLV8-61A0A075B6I0 122 aa8.12□□□□□ -1.11
CLK3-206ENST00000562078 LY6G6CO95867 125 aa8.11□□□□□ -1.11
CLK3-206ENST00000562078 C14orf177Q52M58 125 aa8.1□□□□□ -1.11
CLK3-206ENST00000562078 RTL8CO15255 209 aa8.08□□□□□ -1.12
CLK3-206ENST00000562078 CHTF8P0CG12 524 aa8.08□□□□□ -1.12
CLK3-206ENST00000562078 KMT2AQ03164 3969 aa8.06□□□□□ -1.12
CLK3-206ENST00000562078 Q6ZRN7 208 aaPredicted RBP8.06□□□□□ -1.12
CLK3-206ENST00000562078 ALMS1Q8TCU4 4167 aa8.05□□□□□ -1.12
CLK3-206ENST00000562078 Q6ZR54 194 aa8.05□□□□□ -1.12
CLK3-206ENST00000562078 DNAH2Q9P225 4427 aa8.05□□□□□ -1.12
CLK3-206ENST00000562078 TP53AIP1Q9HCN2 124 aa8.04□□□□□ -1.12
CLK3-206ENST00000562078 CSAG1Q6PB30 78 aa8.03□□□□□ -1.12
CLK3-206ENST00000562078 RETNLBQ9BQ08 111 aa8.02□□□□□ -1.13
CLK3-206ENST00000562078 DNAH6Q9C0G6 4158 aa8.01□□□□□ -1.13
CLK3-206ENST00000562078 ASB16-AS1Q495Z4 193 aa8.01□□□□□ -1.13
CLK3-206ENST00000562078 C1orf134Q5TEV5 83 aa8□□□□□ -1.13
CLK3-206ENST00000562078 KRTAP11-1Q8IUC1 163 aa8□□□□□ -1.13
CLK3-206ENST00000562078 PANO1I0J062 215 aa7.98□□□□□ -1.13
CLK3-206ENST00000562078 SPATA8Q6RVD6 105 aa7.96□□□□□ -1.13
CLK3-206ENST00000562078 C8orf17Q9NRJ1 99 aa7.96□□□□□ -1.13
CLK3-206ENST00000562078 ZNF706Q9Y5V0 76 aaPredicted RBP7.96□□□□□ -1.13
CLK3-206ENST00000562078 HYDINQ4G0P3 5121 aa7.96□□□□□ -1.13
CLK3-206ENST00000562078 A0A087WTM6 91 aa7.96□□□□□ -1.14
CLK3-206ENST00000562078 Q96NJ1 140 aa7.95□□□□□ -1.14
CLK3-206ENST00000562078 DNAH17Q9UFH2 4485 aa7.94□□□□□ -1.14
CLK3-206ENST00000562078 IGHV6-1A0A0B4J1U7 121 aa7.93□□□□□ -1.14
CLK3-206ENST00000562078 A0A1B0GU69 56 aa7.93□□□□□ -1.14
CLK3-206ENST00000562078 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.93□□□□□ -1.14
CLK3-206ENST00000562078 HECTD4Q9Y4D8 3996 aa7.92□□□□□ -1.14
CLK3-206ENST00000562078 MIR22HGQ0VDD5 57 aa7.92□□□□□ -1.14
CLK3-206ENST00000562078 SACSQ9NZJ4 4579 aa7.91□□□□□ -1.14
CLK3-206ENST00000562078 FRAS1Q86XX4 4008 aa7.91□□□□□ -1.14
CLK3-206ENST00000562078 A0A087X002 238 aa7.91□□□□□ -1.14
CLK3-206ENST00000562078 SPACA4Q8TDM5 124 aa7.91□□□□□ -1.14
CLK3-206ENST00000562078 A0A0A0MQY5 61 aa7.9□□□□□ -1.15
CLK3-206ENST00000562078 ACYP2P14621 99 aa7.9□□□□□ -1.15
CLK3-206ENST00000562078 SPRR1BP22528 89 aa7.89□□□□□ -1.15
CLK3-206ENST00000562078 NOTCH2NLQ7Z3S9 236 aa7.89□□□□□ -1.15
CLK3-206ENST00000562078 MRPL34Q9BQ48 92 aaKnown RBP7.88□□□□□ -1.15
CLK3-206ENST00000562078 Q5W150 140 aa7.87□□□□□ -1.15
CLK3-206ENST00000562078 IGLV5-52A0A0A0MRZ9 124 aa7.86□□□□□ -1.15
CLK3-206ENST00000562078 A0A1B0GVX0 72 aa7.86□□□□□ -1.15
CLK3-206ENST00000562078 UQCR11O14957 56 aa7.85□□□□□ -1.15
CLK3-206ENST00000562078 KRTAP13-1Q8IUC0 172 aa7.84□□□□□ -1.16
CLK3-206ENST00000562078 DNAH11Q96DT5 4516 aa7.84□□□□□ -1.16
CLK3-206ENST00000562078 FAT2Q9NYQ8 4349 aa7.83□□□□□ -1.16
CLK3-206ENST00000562078 IGLV9-49A0A0B4J1Y8 123 aa7.82□□□□□ -1.16
CLK3-206ENST00000562078 ZNF861PO60384 105 aa7.81□□□□□ -1.16
CLK3-206ENST00000562078 DNAH5Q8TE73 4624 aa7.8□□□□□ -1.16
CLK3-206ENST00000562078 DMAC1Q96GE9 116 aa7.8□□□□□ -1.16
CLK3-206ENST00000562078 CDK2AP2O75956 126 aa7.79□□□□□ -1.16
CLK3-206ENST00000562078 KRTAP13-3Q3SY46 172 aa7.79□□□□□ -1.16
CLK3-206ENST00000562078 PKD1P98161 4303 aa7.79□□□□□ -1.16
CLK3-206ENST00000562078 KRTAP10-2P60368 255 aa7.79□□□□□ -1.16
CLK3-206ENST00000562078 PSORS1C2Q9UIG4 136 aa7.78□□□□□ -1.16
CLK3-206ENST00000562078 RYR2Q92736 4967 aa7.76□□□□□ -1.17
CLK3-206ENST00000562078 KMT2CQ8NEZ4 4911 aaKnown RBP7.76□□□□□ -1.17
CLK3-206ENST00000562078 DNAH8Q96JB1 4490 aa7.75□□□□□ -1.17
CLK3-206ENST00000562078 ROMO1P60602 79 aa7.75□□□□□ -1.17
CLK3-206ENST00000562078 LINC00483Q53H64 154 aa7.7□□□□□ -1.18
CLK3-206ENST00000562078 KRTAP10-1P60331 282 aa7.68□□□□□ -1.18
CLK3-206ENST00000562078 SPINK6Q6UWN8 80 aa7.68□□□□□ -1.18
CLK3-206ENST00000562078 ANAPC11Q9NYG5 84 aa7.68□□□□□ -1.18
CLK3-206ENST00000562078 KRTAP25-1Q3LHN0 102 aa7.68□□□□□ -1.18
CLK3-206ENST00000562078 PKHD1P08F94 4074 aa7.66□□□□□ -1.18
CLK3-206ENST00000562078 CIRBP-AS1Q8TBR5 109 aa7.66□□□□□ -1.18
CLK3-206ENST00000562078 IGLV7-43P04211 117 aa7.64□□□□□ -1.19
CLK3-206ENST00000562078 Q6ZSA8 131 aa7.63□□□□□ -1.19
CLK3-206ENST00000562078 RYR3Q15413 4870 aa7.61□□□□□ -1.19
CLK3-206ENST00000562078 A0A1B0GVY2 172 aa7.6□□□□□ -1.19
CLK3-206ENST00000562078 LRP1BQ9NZR2 4599 aa7.6□□□□□ -1.19
CLK3-206ENST00000562078 DYNC1H1Q14204 4646 aaKnown RBP7.59□□□□□ -1.19
CLK3-206ENST00000562078 P0C880 135 aa7.59□□□□□ -1.19
CLK3-206ENST00000562078 FLG2Q5D862 2391 aaPredicted RBP7.59□□□□□ -1.19
CLK3-206ENST00000562078 A8MUU9 505 aa7.59□□□□□ -1.19
CLK3-206ENST00000562078 LINC00304Q8N9R0 145 aa7.57□□□□□ -1.2
CLK3-206ENST00000562078 IGKV2-30P06310 120 aa7.57□□□□□ -1.2
CLK3-206ENST00000562078 CRIPTQ9P021 101 aa7.54□□□□□ -1.2
CLK3-206ENST00000562078 SPINK1P00995 79 aa7.53□□□□□ -1.2
CLK3-206ENST00000562078 FAM229AH3BQW9 127 aa7.53□□□□□ -1.2
CLK3-206ENST00000562078 H0YAA0 97 aa7.52□□□□□ -1.21
CLK3-206ENST00000562078 APOBP04114 4563 aaKnown RBP7.5□□□□□ -1.21
CLK3-206ENST00000562078 IGKV2D-30A0A075B6S6 120 aa7.49□□□□□ -1.21
CLK3-206ENST00000562078 VPS13BQ7Z7G8 4022 aa7.46□□□□□ -1.21
CLK3-206ENST00000562078 SMR3BP02814 79 aaPredicted RBP7.46□□□□□ -1.22
CLK3-206ENST00000562078 SSBP3-AS1Q7Z2R9 100 aa7.45□□□□□ -1.22
CLK3-206ENST00000562078 KRTAP13-2Q52LG2 175 aa7.44□□□□□ -1.22
CLK3-206ENST00000562078 KRTAP16-1A8MUX0 517 aa7.41□□□□□ -1.22
CLK3-206ENST00000562078 KRTAP1-4P0C5Y4 121 aa7.41□□□□□ -1.22
CLK3-206ENST00000562078 FAT1Q14517 4588 aa7.4□□□□□ -1.22
CLK3-206ENST00000562078 Q8N1X5 172 aa7.39□□□□□ -1.23
CLK3-206ENST00000562078 TYMSOSQ8TAI1 123 aa7.38□□□□□ -1.23
CLK3-206ENST00000562078 EPPK1P58107 5090 aaKnown RBP7.34□□□□□ -1.23
CLK3-206ENST00000562078 A0A1B0GU33 70 aa7.34□□□□□ -1.24
CLK3-206ENST00000562078 HSPG2P98160 4391 aa7.32□□□□□ -1.24
CLK3-206ENST00000562078 RYR1P21817 5038 aa7.3□□□□□ -1.24
CLK3-206ENST00000562078 SPINT4Q6UDR6 99 aa7.29□□□□□ -1.24
CLK3-206ENST00000562078 NDUFAF8A1L188 74 aa7.29□□□□□ -1.24
CLK3-206ENST00000562078 KRTAP10-4P60372 401 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms