RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PRO1854Q9UHT4 67 aa5.83□□□□□ -1.48
USP3-220ENST00000561381 FXYD2P54710 66 aa5.82□□□□□ -1.48
USP3-220ENST00000561381 FAM236DA0A1B0GTK5 79 aa5.81□□□□□ -1.48
USP3-220ENST00000561381 FAM236CP0DP71 79 aa5.81□□□□□ -1.48
USP3-220ENST00000561381 DEFB116Q30KQ4 102 aa5.81□□□□□ -1.48
USP3-220ENST00000561381 MT1FP04733 61 aa5.8□□□□□ -1.48
USP3-220ENST00000561381 HRES1P13985 223 aa5.8□□□□□ -1.48
USP3-220ENST00000561381 S100A1P23297 94 aa5.8□□□□□ -1.48
USP3-220ENST00000561381 ANKRD29Q8N6D5 301 aa5.8□□□□□ -1.48
USP3-220ENST00000561381 MPLKIPQ8TAP9 179 aa5.8□□□□□ -1.48
USP3-220ENST00000561381 VAMP8Q9BV40 100 aa5.8□□□□□ -1.48
USP3-220ENST00000561381 TRBV7-4A0A0J9YYF1 115 aa5.79□□□□□ -1.48
USP3-220ENST00000561381 LINC00472Q9H8W2 130 aa5.78□□□□□ -1.48
USP3-220ENST00000561381 ORMDL1Q9P0S3 153 aa5.77□□□□□ -1.49
USP3-220ENST00000561381 IGHV6-1A0A0B4J1U7 121 aa5.76□□□□□ -1.49
USP3-220ENST00000561381 K7ERJ3 54 aa5.76□□□□□ -1.49
USP3-220ENST00000561381 DNAL4O96015 105 aa5.76□□□□□ -1.49
USP3-220ENST00000561381 RBM12B-AS1Q9P1G2 102 aa5.76□□□□□ -1.49
USP3-220ENST00000561381 FCGBPQ9Y6R7 5405 aaPredicted RBP5.75□□□□□ -1.49
USP3-220ENST00000561381 CCKP06307 115 aa5.75□□□□□ -1.49
USP3-220ENST00000561381 TRACP01848 142 aa5.74□□□□□ -1.49
USP3-220ENST00000561381 PSMB2P49721 201 aa5.74□□□□□ -1.49
USP3-220ENST00000561381 KRTAP10-10P60014 251 aa5.74□□□□□ -1.49
USP3-220ENST00000561381 TMEM256-PLSCR3K7ERE1 68 aa5.73□□□□□ -1.49
USP3-220ENST00000561381 H3BQ85 93 aa5.71□□□□□ -1.5
USP3-220ENST00000561381 A0A1B0GVX0 72 aa5.7□□□□□ -1.5
USP3-220ENST00000561381 HSD52Q0P140 79 aa5.7□□□□□ -1.5
USP3-220ENST00000561381 UBE2V1Q13404 147 aa5.7□□□□□ -1.5
USP3-220ENST00000561381 VPS25Q9BRG1 176 aa5.7□□□□□ -1.5
USP3-220ENST00000561381 C8orf87E5RJ46 101 aa5.68□□□□□ -1.5
USP3-220ENST00000561381 COX6CP09669 75 aa5.68□□□□□ -1.5
USP3-220ENST00000561381 PYY3Q5JQD4 70 aa5.67□□□□□ -1.5
USP3-220ENST00000561381 ZCCHC13Q8WW36 166 aaKnown RBP5.67□□□□□ -1.5
USP3-220ENST00000561381 SPINK7P58062 85 aa5.66□□□□□ -1.5
USP3-220ENST00000561381 RBM3P98179 157 aaKnown RBP5.65□□□□□ -1.5
USP3-220ENST00000561381 MTURNQ8N3F0 131 aa5.64□□□□□ -1.51
USP3-220ENST00000561381 DSCR8Q96T75 97 aa5.64□□□□□ -1.51
USP3-220ENST00000561381 SCGB1C2P0DMR2 95 aa5.62□□□□□ -1.51
USP3-220ENST00000561381 MACF1Q9UPN3 7388 aaKnown RBP5.61□□□□□ -1.51
USP3-220ENST00000561381 J3KT08 172 aa5.61□□□□□ -1.51
USP3-220ENST00000561381 BAALC-AS2P0C853 105 aa5.61□□□□□ -1.51
USP3-220ENST00000561381 Q6ZQT0 140 aa5.61□□□□□ -1.51
USP3-220ENST00000561381 Q8N9P0 234 aaPredicted RBP5.61□□□□□ -1.51
USP3-220ENST00000561381 C9JAW5 83 aa5.6□□□□□ -1.51
USP3-220ENST00000561381 UQCR10Q9UDW1 63 aa5.6□□□□□ -1.51
USP3-220ENST00000561381 WFDC13Q8IUB5 93 aa5.59□□□□□ -1.51
USP3-220ENST00000561381 C8orf17Q9NRJ1 99 aa5.58□□□□□ -1.52
USP3-220ENST00000561381 SYNE2Q8WXH0 6885 aaKnown RBP5.57□□□□□ -1.52
USP3-220ENST00000561381 NDUFB1O75438 58 aa5.57□□□□□ -1.52
USP3-220ENST00000561381 KRTAP19-6Q3LI70 58 aa5.57□□□□□ -1.52
USP3-220ENST00000561381 LYRM7Q5U5X0 104 aa5.57□□□□□ -1.52
USP3-220ENST00000561381 IGKV3D-7A0A0C4DH55 119 aa5.56□□□□□ -1.52
USP3-220ENST00000561381 A8MWP4 228 aa5.56□□□□□ -1.52
USP3-220ENST00000561381 C21orf62-AS1Q17RA5 79 aa5.56□□□□□ -1.52
USP3-220ENST00000561381 NAA38Q9BRA0 125 aaKnown RBP5.54□□□□□ -1.52
USP3-220ENST00000561381 Q6ZVQ6 151 aa5.53□□□□□ -1.52
USP3-220ENST00000561381 LOC110117498A0A087WWA1 95 aa5.52□□□□□ -1.53
USP3-220ENST00000561381 LINC00846Q9NV44 126 aa5.52□□□□□ -1.53
USP3-220ENST00000561381 JMJD7-PLA2G4BH0Y9G9 81 aa5.5□□□□□ -1.53
USP3-220ENST00000561381 PRR15Q8IV56 129 aa5.5□□□□□ -1.53
USP3-220ENST00000561381 C14orf132Q9NPU4 83 aa5.5□□□□□ -1.53
USP3-220ENST00000561381 TMA7Q9Y2S6 64 aaKnown RBP5.5□□□□□ -1.53
USP3-220ENST00000561381 ATXN8Q156A1 80 aa5.49□□□□□ -1.53
USP3-220ENST00000561381 MMP24-AS1A0A0U1RRL7 71 aa5.48□□□□□ -1.53
USP3-220ENST00000561381 A0A1B0GW54 56 aa5.48□□□□□ -1.53
USP3-220ENST00000561381 H1FX-AS1Q4G0G2 97 aa5.47□□□□□ -1.53
USP3-220ENST00000561381 MRPL34Q9BQ48 92 aaKnown RBP5.47□□□□□ -1.53
USP3-220ENST00000561381 PDE6GP18545 87 aa5.46□□□□□ -1.54
USP3-220ENST00000561381 NREPQ16612 68 aa5.46□□□□□ -1.54
USP3-220ENST00000561381 TMEM254Q8TBM7 123 aa5.45□□□□□ -1.54
USP3-220ENST00000561381 hDV103S1A0JD37 113 aa5.43□□□□□ -1.54
USP3-220ENST00000561381 K7EQZ3 153 aa5.43□□□□□ -1.54
USP3-220ENST00000561381 M0R143 59 aa5.43□□□□□ -1.54
USP3-220ENST00000561381 NDUFS5O43920 106 aa5.43□□□□□ -1.54
USP3-220ENST00000561381 IGKV2D-30A0A075B6S6 120 aa5.41□□□□□ -1.54
USP3-220ENST00000561381 IGKV2-30P06310 120 aa5.41□□□□□ -1.54
USP3-220ENST00000561381 Q5W150 140 aa5.41□□□□□ -1.54
USP3-220ENST00000561381 KRTAP6-3Q3LI67 103 aa5.4□□□□□ -1.54
USP3-220ENST00000561381 C7orf65Q6ZTY9 151 aa5.37□□□□□ -1.55
USP3-220ENST00000561381 BPY2O14599 106 aa5.35□□□□□ -1.55
USP3-220ENST00000561381 C4orf26Q17RF5 130 aa5.34□□□□□ -1.55
USP3-220ENST00000561381 Q8N9L7 120 aa5.34□□□□□ -1.55
USP3-220ENST00000561381 BATFQ16520 125 aa5.33□□□□□ -1.56
USP3-220ENST00000561381 HCG22E2RYF7 251 aa5.32□□□□□ -1.56
USP3-220ENST00000561381 H3BT86 120 aa5.31□□□□□ -1.56
USP3-220ENST00000561381 C5orf47Q569G3 176 aa5.31□□□□□ -1.56
USP3-220ENST00000561381 CASC2Q6XLA1 102 aa5.31□□□□□ -1.56
USP3-220ENST00000561381 MT1BP07438 61 aa5.28□□□□□ -1.56
USP3-220ENST00000561381 FAM236AA0A1B0GUQ0 79 aa5.27□□□□□ -1.57
USP3-220ENST00000561381 FAM236BA0A1B0GV22 79 aa5.27□□□□□ -1.57
USP3-220ENST00000561381 A0A1W2PPM0 123 aa5.26□□□□□ -1.57
USP3-220ENST00000561381 A6NN06 94 aa5.26□□□□□ -1.57
USP3-220ENST00000561381 TSTD3H0UI37 97 aa5.26□□□□□ -1.57
USP3-220ENST00000561381 TAX1BP3O14907 124 aa5.26□□□□□ -1.57
USP3-220ENST00000561381 SMIM6P0DI80 62 aa5.26□□□□□ -1.57
USP3-220ENST00000561381 NEBP20929 6669 aa5.26□□□□□ -1.57
USP3-220ENST00000561381 LCE1AQ5T7P2 110 aa5.25□□□□□ -1.57
USP3-220ENST00000561381 CXCL6P80162 114 aa5.24□□□□□ -1.57
USP3-220ENST00000561381 S4R3F8 94 aa5.23□□□□□ -1.57
USP3-220ENST00000561381 KRTAP19-8Q3LI54 63 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms