RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 LINC00575Q6W349 94 aa1.47□□□□□ -2.17
VPS13C-210ENST00000561258 AP4S1Q9Y587 144 aa1.47□□□□□ -2.17
VPS13C-210ENST00000561258 TRAV1-2A0A0B4J238 106 aa1.46□□□□□ -2.18
VPS13C-210ENST00000561258 H3BVH4 76 aa1.46□□□□□ -2.18
VPS13C-210ENST00000561258 RPL37P61927 97 aaKnown RBP1.46□□□□□ -2.18
VPS13C-210ENST00000561258 SCN3BQ9NY72 215 aa1.46□□□□□ -2.18
VPS13C-210ENST00000561258 HIGD1CA8MV81 97 aa1.45□□□□□ -2.18
VPS13C-210ENST00000561258 RPS29P62273 56 aaKnown RBP1.45□□□□□ -2.18
VPS13C-210ENST00000561258 SPAG11BQ08648 103 aa1.45□□□□□ -2.18
VPS13C-210ENST00000561258 Q6ZUT4 128 aa1.45□□□□□ -2.18
VPS13C-210ENST00000561258 TMEM191AQ9H0A3 160 aa1.45□□□□□ -2.18
VPS13C-210ENST00000561258 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.44□□□□□ -2.18
VPS13C-210ENST00000561258 FXYD6-FXYD2A0A087WZ82 144 aa1.44□□□□□ -2.18
VPS13C-210ENST00000561258 LINC00959A0A1B0GUT2 108 aa1.44□□□□□ -2.18
VPS13C-210ENST00000561258 LOC101927531A0A1B0GV80 90 aa1.44□□□□□ -2.18
VPS13C-210ENST00000561258 NDUFA1O15239 70 aa1.44□□□□□ -2.18
VPS13C-210ENST00000561258 SLC25A6P12236 298 aa1.44□□□□□ -2.18
VPS13C-210ENST00000561258 Q6ZQY7 126 aa1.44□□□□□ -2.18
VPS13C-210ENST00000561258 CCKP06307 115 aa1.43□□□□□ -2.18
VPS13C-210ENST00000561258 ARMS2P0C7Q2 107 aa1.43□□□□□ -2.18
VPS13C-210ENST00000561258 LINC01545Q5VT33 79 aa1.43□□□□□ -2.18
VPS13C-210ENST00000561258 S100A16Q96FQ6 103 aaKnown RBP1.43□□□□□ -2.18
VPS13C-210ENST00000561258 MGST2Q99735 147 aa1.43□□□□□ -2.18
VPS13C-210ENST00000561258 PSENENQ9NZ42 101 aa1.43□□□□□ -2.18
VPS13C-210ENST00000561258 PIGBOS1A0A0B4J2F0 54 aa1.42□□□□□ -2.18
VPS13C-210ENST00000561258 FGF7P21781 194 aa1.42□□□□□ -2.18
VPS13C-210ENST00000561258 PRLHP81277 87 aa1.42□□□□□ -2.18
VPS13C-210ENST00000561258 TRBV30A0A0K0K1B3 111 aa1.41□□□□□ -2.18
VPS13C-210ENST00000561258 UBE2L3P68036 154 aaKnown RBP1.41□□□□□ -2.18
VPS13C-210ENST00000561258 C5orf38Q86SI9 138 aa1.41□□□□□ -2.18
VPS13C-210ENST00000561258 Q86TA4 180 aa1.41□□□□□ -2.18
VPS13C-210ENST00000561258 LINC00208Q96KT6 92 aa1.41□□□□□ -2.18
VPS13C-210ENST00000561258 C6orf48Q9UBA6 75 aa1.41□□□□□ -2.18
VPS13C-210ENST00000561258 CCDC179H3BU77 68 aa1.4□□□□□ -2.19
VPS13C-210ENST00000561258 SSSCA1O60232 199 aa1.4□□□□□ -2.19
VPS13C-210ENST00000561258 MGPP08493 103 aa1.4□□□□□ -2.19
VPS13C-210ENST00000561258 SPRR4Q96PI1 79 aa1.4□□□□□ -2.19
VPS13C-210ENST00000561258 PSMG3Q9BT73 122 aaPredicted RBP1.4□□□□□ -2.19
VPS13C-210ENST00000561258 AHNAKQ09666 5890 aaKnown RBP1.39□□□□□ -2.19
VPS13C-210ENST00000561258 SMIM31A0A1B0GVY4 71 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 SPANXN1Q5VSR9 72 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 SSBP3-AS1Q7Z2R9 100 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 KRTAP8-1Q8IUC2 63 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 C8orf59Q8N0T1 100 aaPredicted RBP1.39□□□□□ -2.19
VPS13C-210ENST00000561258 KCNRGQ8N5I3 272 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 FAM167A-AS1Q96KT0 104 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 TMEM242Q9NWH2 141 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 ARL2-SNX15V9GYD0 113 aa1.39□□□□□ -2.19
VPS13C-210ENST00000561258 UBE2L5PA0A1B0GUS4 154 aa1.38□□□□□ -2.19
VPS13C-210ENST00000561258 M0QY20 66 aa1.38□□□□□ -2.19
VPS13C-210ENST00000561258 MT4P47944 62 aa1.38□□□□□ -2.19
VPS13C-210ENST00000561258 A0A1W2PPM0 123 aa1.37□□□□□ -2.19
VPS13C-210ENST00000561258 C9orf153Q5TBE3 101 aa1.37□□□□□ -2.19
VPS13C-210ENST00000561258 Q5VV11 94 aa1.37□□□□□ -2.19
VPS13C-210ENST00000561258 IFI27L1Q96BM0 104 aa1.36□□□□□ -2.19
VPS13C-210ENST00000561258 CDC42SE2Q9NRR3 84 aa1.36□□□□□ -2.19
VPS13C-210ENST00000561258 TEX49A0A1B0GTD5 131 aa1.35□□□□□ -2.19
VPS13C-210ENST00000561258 FAM25AB3EWG3 89 aa1.35□□□□□ -2.19
VPS13C-210ENST00000561258 FAM25CB3EWG5 89 aa1.35□□□□□ -2.19
VPS13C-210ENST00000561258 FAM25GB3EWG6 89 aa1.35□□□□□ -2.19
VPS13C-210ENST00000561258 A0A1B0GV90 55 aa1.34□□□□□ -2.19
VPS13C-210ENST00000561258 PLAC4Q8WY50 150 aa1.34□□□□□ -2.19
VPS13C-210ENST00000561258 TMEM141Q96I45 108 aa1.34□□□□□ -2.19
VPS13C-210ENST00000561258 SCP2D1Q9UJQ7 156 aa1.34□□□□□ -2.19
VPS13C-210ENST00000561258 MT1BP07438 61 aa1.33□□□□□ -2.2
VPS13C-210ENST00000561258 CRIP1P50238 77 aa1.33□□□□□ -2.2
VPS13C-210ENST00000561258 C7orf77A4D0Y5 90 aa1.32□□□□□ -2.2
VPS13C-210ENST00000561258 I3L3M4 83 aa1.32□□□□□ -2.2
VPS13C-210ENST00000561258 AKAIN1P0CW23 69 aa1.32□□□□□ -2.2
VPS13C-210ENST00000561258 NPC2P61916 151 aa1.32□□□□□ -2.2
VPS13C-210ENST00000561258 SEC11CQ9BY50 192 aa1.32□□□□□ -2.2
VPS13C-210ENST00000561258 TOMM7Q9P0U1 55 aa1.32□□□□□ -2.2
VPS13C-210ENST00000561258 DLEU1O43261 78 aa1.31□□□□□ -2.2
VPS13C-210ENST00000561258 NDUFB6O95139 128 aa1.31□□□□□ -2.2
VPS13C-210ENST00000561258 UBE2G1P62253 170 aa1.31□□□□□ -2.2
VPS13C-210ENST00000561258 RBM3P98179 157 aaKnown RBP1.31□□□□□ -2.2
VPS13C-210ENST00000561258 KLKP1Q107X0 134 aa1.31□□□□□ -2.2
VPS13C-210ENST00000561258 MEIG1Q5JSS6 88 aa1.31□□□□□ -2.2
VPS13C-210ENST00000561258 MUC5ACP98088 5654 aa1.31□□□□□ -2.2
VPS13C-210ENST00000561258 F8VRH5 84 aa1.3□□□□□ -2.2
VPS13C-210ENST00000561258 SFT2D2O95562 160 aa1.3□□□□□ -2.2
VPS13C-210ENST00000561258 FCER1GP30273 86 aa1.3□□□□□ -2.2
VPS13C-210ENST00000561258 GNGT1P63211 74 aa1.3□□□□□ -2.2
VPS13C-210ENST00000561258 SSBP1Q04837 148 aaKnown RBP1.3□□□□□ -2.2
VPS13C-210ENST00000561258 RPL39LQ96EH5 51 aaKnown RBP1.3□□□□□ -2.2
VPS13C-210ENST00000561258 MUC5BQ9HC84 5762 aaPredicted RBP1.29□□□□□ -2.2
VPS13C-210ENST00000561258 ETDCA0A1B0GVM5 59 aa1.29□□□□□ -2.2
VPS13C-210ENST00000561258 SNCGO76070 127 aa1.29□□□□□ -2.2
VPS13C-210ENST00000561258 ELOF1P60002 83 aaKnown RBP1.28□□□□□ -2.2
VPS13C-210ENST00000561258 MRPS10P82664 201 aaKnown RBP1.28□□□□□ -2.2
VPS13C-210ENST00000561258 Q8IZM0 81 aa1.28□□□□□ -2.2
VPS13C-210ENST00000561258 COPS9Q8WXC6 57 aa1.28□□□□□ -2.2
VPS13C-210ENST00000561258 Q96NJ1 140 aa1.28□□□□□ -2.2
VPS13C-210ENST00000561258 ST20Q9HBF5 79 aa1.28□□□□□ -2.2
VPS13C-210ENST00000561258 F2Z2F3 143 aa1.27□□□□□ -2.21
VPS13C-210ENST00000561258 GCHFRP30047 84 aa1.27□□□□□ -2.21
VPS13C-210ENST00000561258 FAUP35544 74 aaKnown RBP1.27□□□□□ -2.21
VPS13C-210ENST00000561258 KRTAP19-8Q3LI54 63 aa1.27□□□□□ -2.21
VPS13C-210ENST00000561258 RPL7L1Q6DKI1 246 aaKnown RBP1.27□□□□□ -2.21
VPS13C-210ENST00000561258 TMEM167BQ9NRX6 74 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms