RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PSORS1C2Q9UIG4 136 aa9.7□□□□□ -0.86
SHMT2-232ENST00000557487 DNAH10Q8IVF4 4471 aa9.7□□□□□ -0.86
SHMT2-232ENST00000557487 HRES1P13985 223 aa9.69□□□□□ -0.86
SHMT2-232ENST00000557487 A8MU10 97 aa9.68□□□□□ -0.86
SHMT2-232ENST00000557487 DYNC2H1Q8NCM8 4307 aaKnown RBP9.67□□□□□ -0.86
SHMT2-232ENST00000557487 SPAG11AQ6PDA7 123 aa9.66□□□□□ -0.86
SHMT2-232ENST00000557487 KMT2CQ8NEZ4 4911 aaKnown RBP9.66□□□□□ -0.86
SHMT2-232ENST00000557487 KTN1-AS1Q86SY8 53 aa9.66□□□□□ -0.86
SHMT2-232ENST00000557487 C8orf87E5RJ46 101 aa9.65□□□□□ -0.86
SHMT2-232ENST00000557487 RTL8CO15255 209 aa9.64□□□□□ -0.87
SHMT2-232ENST00000557487 SPTSSBQ8NFR3 76 aa9.63□□□□□ -0.87
SHMT2-232ENST00000557487 KRTAP13-3Q3SY46 172 aa9.62□□□□□ -0.87
SHMT2-232ENST00000557487 PLECQ15149 4684 aaKnown RBP9.61□□□□□ -0.87
SHMT2-232ENST00000557487 A0A087X002 238 aa9.61□□□□□ -0.87
SHMT2-232ENST00000557487 NOTCH2NLQ7Z3S9 236 aa9.61□□□□□ -0.87
SHMT2-232ENST00000557487 SRRM2Q9UQ35 2752 aaKnown RBP9.61□□□□□ -0.87
SHMT2-232ENST00000557487 LY6G6CO95867 125 aa9.6□□□□□ -0.87
SHMT2-232ENST00000557487 LYSTQ99698 3801 aa9.6□□□□□ -0.87
SHMT2-232ENST00000557487 TENM2Q9NT68 2774 aa9.6□□□□□ -0.87
SHMT2-232ENST00000557487 A6NN06 94 aa9.6□□□□□ -0.87
SHMT2-232ENST00000557487 SSBP3-AS1Q7Z2R9 100 aa9.59□□□□□ -0.87
SHMT2-232ENST00000557487 ACYP2P14621 99 aa9.58□□□□□ -0.88
SHMT2-232ENST00000557487 ALMS1Q8TCU4 4167 aa9.58□□□□□ -0.88
SHMT2-232ENST00000557487 IGLV7-43P04211 117 aa9.56□□□□□ -0.88
SHMT2-232ENST00000557487 ANAPC11Q9NYG5 84 aa9.56□□□□□ -0.88
SHMT2-232ENST00000557487 RYR2Q92736 4967 aa9.56□□□□□ -0.88
SHMT2-232ENST00000557487 Q5W150 140 aa9.55□□□□□ -0.88
SHMT2-232ENST00000557487 SACSQ9NZJ4 4579 aa9.55□□□□□ -0.88
SHMT2-232ENST00000557487 RYR3Q15413 4870 aa9.54□□□□□ -0.88
SHMT2-232ENST00000557487 SPINK6Q6UWN8 80 aa9.53□□□□□ -0.88
SHMT2-232ENST00000557487 FAM229AH3BQW9 127 aa9.52□□□□□ -0.89
SHMT2-232ENST00000557487 DMAC1Q96GE9 116 aa9.51□□□□□ -0.89
SHMT2-232ENST00000557487 SPINK7P58062 85 aa9.5□□□□□ -0.89
SHMT2-232ENST00000557487 CIRBP-AS1Q8TBR5 109 aa9.5□□□□□ -0.89
SHMT2-232ENST00000557487 HYDINQ4G0P3 5121 aa9.49□□□□□ -0.89
SHMT2-232ENST00000557487 C7orf65Q6ZTY9 151 aa9.48□□□□□ -0.89
SHMT2-232ENST00000557487 LINC00313P59037 77 aa9.47□□□□□ -0.89
SHMT2-232ENST00000557487 PRR26Q8N8Z3 221 aa9.47□□□□□ -0.89
SHMT2-232ENST00000557487 VPS13DQ5THJ4 4388 aa9.45□□□□□ -0.9
SHMT2-232ENST00000557487 C1orf134Q5TEV5 83 aa9.43□□□□□ -0.9
SHMT2-232ENST00000557487 KMT2AQ03164 3969 aa9.43□□□□□ -0.9
SHMT2-232ENST00000557487 IGKV2-30P06310 120 aa9.42□□□□□ -0.9
SHMT2-232ENST00000557487 DNAH6Q9C0G6 4158 aa9.41□□□□□ -0.9
SHMT2-232ENST00000557487 RBM12B-AS1Q9P1G2 102 aa9.41□□□□□ -0.9
SHMT2-232ENST00000557487 DNAH8Q96JB1 4490 aa9.36□□□□□ -0.91
SHMT2-232ENST00000557487 A0A1B0GU69 56 aa9.35□□□□□ -0.91
SHMT2-232ENST00000557487 DNAH17Q9UFH2 4485 aa9.34□□□□□ -0.91
SHMT2-232ENST00000557487 KRTAP16-1A8MUX0 517 aa9.31□□□□□ -0.92
SHMT2-232ENST00000557487 HECTD4Q9Y4D8 3996 aa9.31□□□□□ -0.92
SHMT2-232ENST00000557487 SPATA8Q6RVD6 105 aa9.31□□□□□ -0.92
SHMT2-232ENST00000557487 KRTAP13-2Q52LG2 175 aa9.29□□□□□ -0.92
SHMT2-232ENST00000557487 A0A1B0GVY2 172 aa9.25□□□□□ -0.93
SHMT2-232ENST00000557487 UQCR11O14957 56 aa9.25□□□□□ -0.93
SHMT2-232ENST00000557487 RETNLBQ9BQ08 111 aa9.23□□□□□ -0.93
SHMT2-232ENST00000557487 PLA2G1BP04054 148 aaKnown RBP9.23□□□□□ -0.93
SHMT2-232ENST00000557487 Q6ZSA8 131 aa9.23□□□□□ -0.93
SHMT2-232ENST00000557487 FRAS1Q86XX4 4008 aa9.22□□□□□ -0.93
SHMT2-232ENST00000557487 DNAH2Q9P225 4427 aa9.21□□□□□ -0.93
SHMT2-232ENST00000557487 EPPK1P58107 5090 aaKnown RBP9.21□□□□□ -0.93
SHMT2-232ENST00000557487 IGKV2D-30A0A075B6S6 120 aa9.21□□□□□ -0.93
SHMT2-232ENST00000557487 MIR22HGQ0VDD5 57 aa9.21□□□□□ -0.93
SHMT2-232ENST00000557487 KRTAP10-2P60368 255 aa9.18□□□□□ -0.94
SHMT2-232ENST00000557487 C4orf48Q5BLP8 95 aa9.17□□□□□ -0.94
SHMT2-232ENST00000557487 FAT2Q9NYQ8 4349 aa9.17□□□□□ -0.94
SHMT2-232ENST00000557487 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
SHMT2-232ENST00000557487 SPINK1P00995 79 aa9.16□□□□□ -0.94
SHMT2-232ENST00000557487 BIRC6Q9NR09 4857 aa9.16□□□□□ -0.94
SHMT2-232ENST00000557487 RPS29P62273 56 aaKnown RBP9.11□□□□□ -0.95
SHMT2-232ENST00000557487 KRTAP10-1P60331 282 aa9.1□□□□□ -0.95
SHMT2-232ENST00000557487 TYMSOSQ8TAI1 123 aa9.09□□□□□ -0.95
SHMT2-232ENST00000557487 PKD1P98161 4303 aa9.08□□□□□ -0.96
SHMT2-232ENST00000557487 DNAH11Q96DT5 4516 aa9.04□□□□□ -0.96
SHMT2-232ENST00000557487 PRAC1Q96KF2 57 aa9.03□□□□□ -0.96
SHMT2-232ENST00000557487 DYNC1H1Q14204 4646 aaKnown RBP9.01□□□□□ -0.97
SHMT2-232ENST00000557487 PKHD1P08F94 4074 aa8.98□□□□□ -0.97
SHMT2-232ENST00000557487 ADM2Q7Z4H4 148 aa8.97□□□□□ -0.97
SHMT2-232ENST00000557487 LINC00304Q8N9R0 145 aa8.97□□□□□ -0.97
SHMT2-232ENST00000557487 DNAH5Q8TE73 4624 aa8.97□□□□□ -0.97
SHMT2-232ENST00000557487 LINC01554Q52M75 96 aa8.95□□□□□ -0.98
SHMT2-232ENST00000557487 Q8N1X5 172 aa8.93□□□□□ -0.98
SHMT2-232ENST00000557487 LRP1BQ9NZR2 4599 aa8.92□□□□□ -0.98
SHMT2-232ENST00000557487 KIAA1109Q2LD37 5005 aa8.91□□□□□ -0.98
SHMT2-232ENST00000557487 A8MUU9 505 aa8.9□□□□□ -0.99
SHMT2-232ENST00000557487 C20orf166-AS1Q96NR2 134 aa8.9□□□□□ -0.99
SHMT2-232ENST00000557487 HERC2O95714 4834 aa8.88□□□□□ -0.99
SHMT2-232ENST00000557487 RYR1P21817 5038 aa8.88□□□□□ -0.99
SHMT2-232ENST00000557487 APOBP04114 4563 aaKnown RBP8.82□□□□□ -1
SHMT2-232ENST00000557487 KRTAP17-1Q9BYP8 105 aa8.82□□□□□ -1
SHMT2-232ENST00000557487 CSAG1Q6PB30 78 aa8.81□□□□□ -1
SHMT2-232ENST00000557487 H0YAA0 97 aa8.8□□□□□ -1
SHMT2-232ENST00000557487 A0A1B0GU33 70 aa8.79□□□□□ -1
SHMT2-232ENST00000557487 HSPG2P98160 4391 aa8.79□□□□□ -1
SHMT2-232ENST00000557487 H1FX-AS1Q4G0G2 97 aa8.76□□□□□ -1.01
SHMT2-232ENST00000557487 VPS13BQ7Z7G8 4022 aa8.76□□□□□ -1.01
SHMT2-232ENST00000557487 KRTAP3-1Q9BYR8 98 aa8.75□□□□□ -1.01
SHMT2-232ENST00000557487 KRTAP4-5Q9BYR2 181 aa8.74□□□□□ -1.01
SHMT2-232ENST00000557487 C9orf92A6NGG3 77 aa8.72□□□□□ -1.01
SHMT2-232ENST00000557487 SMR3BP02814 79 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-232ENST00000557487 Q5VSD8 79 aa8.7□□□□□ -1.02
SHMT2-232ENST00000557487 COX6B2Q6YFQ2 88 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms