RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 SPAG11AQ6PDA7 123 aa5.2□□□□□ -1.58
SYNE2-224ENST00000557024 ANKRD29Q8N6D5 301 aa5.2□□□□□ -1.58
SYNE2-224ENST00000557024 A0A1B0GV72 72 aa5.19□□□□□ -1.58
SYNE2-224ENST00000557024 Q8NBF4 154 aa5.19□□□□□ -1.58
SYNE2-224ENST00000557024 F8W1H4 67 aa5.18□□□□□ -1.58
SYNE2-224ENST00000557024 JMJD7-PLA2G4BH0Y9G9 81 aa5.18□□□□□ -1.58
SYNE2-224ENST00000557024 SSBP3-AS1Q7Z2R9 100 aa5.18□□□□□ -1.58
SYNE2-224ENST00000557024 SMIM29Q86T20 159 aa5.18□□□□□ -1.58
SYNE2-224ENST00000557024 RBM3P98179 157 aaKnown RBP5.17□□□□□ -1.58
SYNE2-224ENST00000557024 Q6JHZ5 121 aa5.17□□□□□ -1.58
SYNE2-224ENST00000557024 DSCR8Q96T75 97 aa5.17□□□□□ -1.58
SYNE2-224ENST00000557024 IGLV8-61A0A075B6I0 122 aa5.14□□□□□ -1.59
SYNE2-224ENST00000557024 PRO0461Q9UI25 63 aa5.14□□□□□ -1.59
SYNE2-224ENST00000557024 M0R2T5 61 aa5.13□□□□□ -1.59
SYNE2-224ENST00000557024 IGFL1Q6UW32 110 aa5.13□□□□□ -1.59
SYNE2-224ENST00000557024 HRCT1Q6UXD1 115 aa5.13□□□□□ -1.59
SYNE2-224ENST00000557024 VPS25Q9BRG1 176 aa5.13□□□□□ -1.59
SYNE2-224ENST00000557024 SPINK1P00995 79 aa5.12□□□□□ -1.59
SYNE2-224ENST00000557024 PDE6GP18545 87 aa5.12□□□□□ -1.59
SYNE2-224ENST00000557024 C14orf132Q9NPU4 83 aa5.12□□□□□ -1.59
SYNE2-224ENST00000557024 ETDBQ3ZM63 59 aa5.11□□□□□ -1.59
SYNE2-224ENST00000557024 TEN1Q86WV5 123 aa5.11□□□□□ -1.59
SYNE2-224ENST00000557024 A0A0G2JQZ4 141 aa5.1□□□□□ -1.59
SYNE2-224ENST00000557024 TRBV7-4A0A0J9YYF1 115 aa5.1□□□□□ -1.59
SYNE2-224ENST00000557024 CCKP06307 115 aa5.1□□□□□ -1.59
SYNE2-224ENST00000557024 PCOTHQ58A44 107 aa5.1□□□□□ -1.59
SYNE2-224ENST00000557024 CD164Q04900 197 aa5.09□□□□□ -1.59
SYNE2-224ENST00000557024 LOC110117498A0A087WWA1 95 aa5.08□□□□□ -1.6
SYNE2-224ENST00000557024 Q6ZQT0 140 aa5.08□□□□□ -1.6
SYNE2-224ENST00000557024 OBSCN-AS1Q96MR7 158 aa5.08□□□□□ -1.6
SYNE2-224ENST00000557024 LIMD2Q9BT23 127 aa5.08□□□□□ -1.6
SYNE2-224ENST00000557024 TRBV7-7A0A0K0K1E9 115 aa5.07□□□□□ -1.6
SYNE2-224ENST00000557024 A0A1W2PNM2 257 aa5.06□□□□□ -1.6
SYNE2-224ENST00000557024 Q6Q795 121 aa5.06□□□□□ -1.6
SYNE2-224ENST00000557024 SS18L2Q9UHA2 77 aa5.06□□□□□ -1.6
SYNE2-224ENST00000557024 A0A087WSZ3 146 aa5.05□□□□□ -1.6
SYNE2-224ENST00000557024 A0A1B0GW54 56 aa5.04□□□□□ -1.6
SYNE2-224ENST00000557024 RPS29P62273 56 aaKnown RBP5.04□□□□□ -1.6
SYNE2-224ENST00000557024 COX6B2Q6YFQ2 88 aa5.04□□□□□ -1.6
SYNE2-224ENST00000557024 J3QR89 54 aa5.03□□□□□ -1.6
SYNE2-224ENST00000557024 NREPQ16612 68 aa5.01□□□□□ -1.61
SYNE2-224ENST00000557024 FLGP20930 4061 aaPredicted RBP5.01□□□□□ -1.61
SYNE2-224ENST00000557024 C9orf92A6NGG3 77 aa5□□□□□ -1.61
SYNE2-224ENST00000557024 Q5XG85 94 aa5□□□□□ -1.61
SYNE2-224ENST00000557024 Q75L30 129 aa5□□□□□ -1.61
SYNE2-224ENST00000557024 IGKV2-30P06310 120 aa4.99□□□□□ -1.61
SYNE2-224ENST00000557024 ACYP1P07311 99 aa4.99□□□□□ -1.61
SYNE2-224ENST00000557024 UBL5Q9BZL1 73 aa4.99□□□□□ -1.61
SYNE2-224ENST00000557024 SSPOA2VEC9 5147 aa4.97□□□□□ -1.61
SYNE2-224ENST00000557024 USH2AO75445 5202 aa4.97□□□□□ -1.61
SYNE2-224ENST00000557024 FCGBPQ9Y6R7 5405 aaPredicted RBP4.96□□□□□ -1.61
SYNE2-224ENST00000557024 IGKV4-1P06312 121 aa4.96□□□□□ -1.62
SYNE2-224ENST00000557024 C1orf195Q5TG92 126 aa4.96□□□□□ -1.62
SYNE2-224ENST00000557024 SIGMAR1Q99720 223 aa4.96□□□□□ -1.62
SYNE2-224ENST00000557024 FAM240AA0A1B0GVK7 77 aa4.95□□□□□ -1.62
SYNE2-224ENST00000557024 J3KT08 172 aa4.95□□□□□ -1.62
SYNE2-224ENST00000557024 K7ERU9 68 aa4.95□□□□□ -1.62
SYNE2-224ENST00000557024 DEFB116Q30KQ4 102 aa4.95□□□□□ -1.62
SYNE2-224ENST00000557024 Q6ZVQ6 151 aa4.95□□□□□ -1.62
SYNE2-224ENST00000557024 LINC00846Q9NV44 126 aa4.95□□□□□ -1.62
SYNE2-224ENST00000557024 BPY2O14599 106 aa4.93□□□□□ -1.62
SYNE2-224ENST00000557024 NDUFB1O75438 58 aa4.93□□□□□ -1.62
SYNE2-224ENST00000557024 LINC00472Q9H8W2 130 aa4.93□□□□□ -1.62
SYNE2-224ENST00000557024 Q96NJ1 140 aa4.92□□□□□ -1.62
SYNE2-224ENST00000557024 RPL37P61927 97 aaKnown RBP4.89□□□□□ -1.63
SYNE2-224ENST00000557024 IGHV6-1A0A0B4J1U7 121 aa4.88□□□□□ -1.63
SYNE2-224ENST00000557024 A8MWP4 228 aa4.88□□□□□ -1.63
SYNE2-224ENST00000557024 LINC00643Q86TS7 51 aa4.88□□□□□ -1.63
SYNE2-224ENST00000557024 IGKV3D-7A0A0C4DH55 119 aa4.87□□□□□ -1.63
SYNE2-224ENST00000557024 A0A1B0GVX0 72 aa4.87□□□□□ -1.63
SYNE2-224ENST00000557024 ATP5EP2Q5VTU8 51 aa4.87□□□□□ -1.63
SYNE2-224ENST00000557024 C8orf87E5RJ46 101 aa4.86□□□□□ -1.63
SYNE2-224ENST00000557024 LINC00313P59037 77 aa4.86□□□□□ -1.63
SYNE2-224ENST00000557024 CXCL6P80162 114 aa4.86□□□□□ -1.63
SYNE2-224ENST00000557024 SYNE2Q8WXH0 6885 aaKnown RBP4.86□□□□□ -1.63
SYNE2-224ENST00000557024 MACF1Q9UPN3 7388 aaKnown RBP4.86□□□□□ -1.63
SYNE2-224ENST00000557024 DSCR10P59022 87 aa4.85□□□□□ -1.63
SYNE2-224ENST00000557024 PRR15Q8IV56 129 aa4.85□□□□□ -1.63
SYNE2-224ENST00000557024 K7EQZ3 153 aa4.84□□□□□ -1.63
SYNE2-224ENST00000557024 HIST1H4AP62805 103 aaKnown RBP4.84□□□□□ -1.63
SYNE2-224ENST00000557024 Q8N9L7 120 aa4.83□□□□□ -1.64
SYNE2-224ENST00000557024 C8orf17Q9NRJ1 99 aa4.83□□□□□ -1.64
SYNE2-224ENST00000557024 Q8N9P0 234 aaPredicted RBP4.81□□□□□ -1.64
SYNE2-224ENST00000557024 WFDC13Q8IUB5 93 aa4.8□□□□□ -1.64
SYNE2-224ENST00000557024 hDV103S1A0JD37 113 aa4.79□□□□□ -1.64
SYNE2-224ENST00000557024 HCG22E2RYF7 251 aa4.79□□□□□ -1.64
SYNE2-224ENST00000557024 MT2AP02795 61 aa4.79□□□□□ -1.64
SYNE2-224ENST00000557024 CASC2Q6XLA1 102 aa4.79□□□□□ -1.64
SYNE2-224ENST00000557024 NOTCH2NLQ7Z3S9 236 aa4.79□□□□□ -1.64
SYNE2-224ENST00000557024 MMP24-AS1A0A0U1RRL7 71 aa4.78□□□□□ -1.64
SYNE2-224ENST00000557024 NDUFS5O43920 106 aa4.78□□□□□ -1.64
SYNE2-224ENST00000557024 TMEM254Q8TBM7 123 aa4.78□□□□□ -1.64
SYNE2-224ENST00000557024 IGKV2D-30A0A075B6S6 120 aa4.77□□□□□ -1.65
SYNE2-224ENST00000557024 MT-ATP8P03928 68 aa4.77□□□□□ -1.65
SYNE2-224ENST00000557024 MRPL34Q9BQ48 92 aaKnown RBP4.77□□□□□ -1.65
SYNE2-224ENST00000557024 MT1FP04733 61 aa4.76□□□□□ -1.65
SYNE2-224ENST00000557024 IMUPQ9GZP8 106 aa4.75□□□□□ -1.65
SYNE2-224ENST00000557024 A0A087WVE0 104 aa4.74□□□□□ -1.65
SYNE2-224ENST00000557024 KRTAP16-1A8MUX0 517 aa4.74□□□□□ -1.65
SYNE2-224ENST00000557024 ATP11AUNQ6ZP68 121 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms