RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	COX8A	P10176	69 aa		4.18	□□□□□ -1.74
SYNE2-222	ENST00000556725	MUSTN1	Q8IVN3	82 aa		4.18	□□□□□ -1.74
SYNE2-222	ENST00000556725	SNHG12	Q9BXW3	62 aa		4.18	□□□□□ -1.74
SYNE2-222	ENST00000556725	MUC12	Q9UKN1	5478 aa		4.17	□□□□□ -1.74
SYNE2-222	ENST00000556725		H3BUT2	72 aa		4.17	□□□□□ -1.74
SYNE2-222	ENST00000556725	COL5A1-AS1	Q5SY13	56 aa		4.17	□□□□□ -1.74
SYNE2-222	ENST00000556725	ATOH7	Q8N100	152 aa		4.17	□□□□□ -1.74
SYNE2-222	ENST00000556725	hADV29S1	A0JD25	119 aa		4.16	□□□□□ -1.74
SYNE2-222	ENST00000556725	IFITM1	P13164	125 aa		4.15	□□□□□ -1.75
SYNE2-222	ENST00000556725	KRTAP20-1	Q3LI63	56 aa		4.15	□□□□□ -1.75
SYNE2-222	ENST00000556725	SCGB1D4	Q6XE38	83 aa		4.15	□□□□□ -1.75
SYNE2-222	ENST00000556725	HIGD1B	Q9P298	99 aa		4.15	□□□□□ -1.75
SYNE2-222	ENST00000556725	HSD52	Q0P140	79 aa		4.14	□□□□□ -1.75
SYNE2-222	ENST00000556725	KRTAP2-2	Q9BYT5	123 aa		4.14	□□□□□ -1.75
SYNE2-222	ENST00000556725	VAMP3	Q15836	100 aa		4.13	□□□□□ -1.75
SYNE2-222	ENST00000556725		A0A1B0GV90	55 aa		4.12	□□□□□ -1.75
SYNE2-222	ENST00000556725	LINC00313	P59037	77 aa		4.12	□□□□□ -1.75
SYNE2-222	ENST00000556725	C2orf91	Q6ZV80	131 aa		4.12	□□□□□ -1.75
SYNE2-222	ENST00000556725	COPS9	Q8WXC6	57 aa		4.12	□□□□□ -1.75
SYNE2-222	ENST00000556725	SS18L2	Q9UHA2	77 aa		4.12	□□□□□ -1.75
SYNE2-222	ENST00000556725		A0A087WSZ3	146 aa		4.11	□□□□□ -1.75
SYNE2-222	ENST00000556725	BVES-AS1	Q5T3Y7	98 aa		4.11	□□□□□ -1.75
SYNE2-222	ENST00000556725	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	4.11	□□□□□ -1.75
SYNE2-222	ENST00000556725		Q6ZVH6	145 aa		4.11	□□□□□ -1.75
SYNE2-222	ENST00000556725	BATF	Q16520	125 aa		4.1	□□□□□ -1.75
SYNE2-222	ENST00000556725	TEN1	Q86WV5	123 aa		4.1	□□□□□ -1.75
SYNE2-222	ENST00000556725	IGKV2D-30	A0A075B6S6	120 aa		4.09	□□□□□ -1.75
SYNE2-222	ENST00000556725		A8MWP4	228 aa		4.09	□□□□□ -1.75
SYNE2-222	ENST00000556725	SIGMAR1	Q99720	223 aa		4.09	□□□□□ -1.75
SYNE2-222	ENST00000556725	KRTAP5-1	Q6L8H4	278 aa		4.08	□□□□□ -1.76
SYNE2-222	ENST00000556725	MTURN	Q8N3F0	131 aa		4.08	□□□□□ -1.76
SYNE2-222	ENST00000556725	PPDPFL	Q8WWR9	84 aa		4.08	□□□□□ -1.76
SYNE2-222	ENST00000556725	TAX1BP3	O14907	124 aa		4.06	□□□□□ -1.76
SYNE2-222	ENST00000556725	IGKV4-1	P06312	121 aa		4.06	□□□□□ -1.76
SYNE2-222	ENST00000556725	CEND1	Q8N111	149 aa		4.06	□□□□□ -1.76
SYNE2-222	ENST00000556725	NDUFV3	P56181	108 aa	Known RBP	4.05	□□□□□ -1.76
SYNE2-222	ENST00000556725	UBE2V1	Q13404	147 aa		4.05	□□□□□ -1.76
SYNE2-222	ENST00000556725	DEFB116	Q30KQ4	102 aa		4.05	□□□□□ -1.76
SYNE2-222	ENST00000556725	MDN1	Q9NU22	5596 aa		4.04	□□□□□ -1.76
SYNE2-222	ENST00000556725		A0A1W2PNM2	257 aa		4.04	□□□□□ -1.76
SYNE2-222	ENST00000556725	SPINK7	P58062	85 aa		4.04	□□□□□ -1.76
SYNE2-222	ENST00000556725	LYRM7	Q5U5X0	104 aa		4.04	□□□□□ -1.76
SYNE2-222	ENST00000556725	GTF2H5	Q6ZYL4	71 aa		4.04	□□□□□ -1.76
SYNE2-222	ENST00000556725	HIST1H4G	Q99525	98 aa		4.04	□□□□□ -1.76
SYNE2-222	ENST00000556725	FXYD2	P54710	66 aa		4.03	□□□□□ -1.76
SYNE2-222	ENST00000556725	IGHV6-1	A0A0B4J1U7	121 aa		4.02	□□□□□ -1.77
SYNE2-222	ENST00000556725		H3BMG7	143 aa		4.02	□□□□□ -1.77
SYNE2-222	ENST00000556725		A0A1W2PPM0	123 aa		4.01	□□□□□ -1.77
SYNE2-222	ENST00000556725		A6NN06	94 aa		4.01	□□□□□ -1.77
SYNE2-222	ENST00000556725		K7EP34	96 aa		4.01	□□□□□ -1.77
SYNE2-222	ENST00000556725	FABP2	P12104	132 aa		4.01	□□□□□ -1.77
SYNE2-222	ENST00000556725	KRTAP5-9	P26371	169 aa		4.01	□□□□□ -1.77
SYNE2-222	ENST00000556725	KRTAP5-4	Q6L8H1	288 aa		4.01	□□□□□ -1.77
SYNE2-222	ENST00000556725	ZCCHC13	Q8WW36	166 aa	Known RBP	4	□□□□□ -1.77
SYNE2-222	ENST00000556725	FAM218A	Q96MZ4	157 aa		4	□□□□□ -1.77
SYNE2-222	ENST00000556725	KMT2D	O14686	5537 aa		3.99	□□□□□ -1.77
SYNE2-222	ENST00000556725		A0A0B4J2C4	111 aa		3.99	□□□□□ -1.77
SYNE2-222	ENST00000556725	WFDC13	Q8IUB5	93 aa		3.99	□□□□□ -1.77
SYNE2-222	ENST00000556725	LINC00472	Q9H8W2	130 aa		3.99	□□□□□ -1.77
SYNE2-222	ENST00000556725	SPCS1	Q9Y6A9	102 aa		3.98	□□□□□ -1.77
SYNE2-222	ENST00000556725	MT1B	P07438	61 aa		3.97	□□□□□ -1.77
SYNE2-222	ENST00000556725	RAB37	Q96AX2	223 aa		3.97	□□□□□ -1.77
SYNE2-222	ENST00000556725	KRTAP2-3	P0C7H8	128 aa		3.96	□□□□□ -1.78
SYNE2-222	ENST00000556725	KRTAP2-4	Q9BYR9	128 aa		3.96	□□□□□ -1.78
SYNE2-222	ENST00000556725	PRO1854	Q9UHT4	67 aa		3.96	□□□□□ -1.78
SYNE2-222	ENST00000556725	TRBV7-4	A0A0J9YYF1	115 aa		3.95	□□□□□ -1.78
SYNE2-222	ENST00000556725		A0A1B0GV72	72 aa		3.95	□□□□□ -1.78
SYNE2-222	ENST00000556725		F8W1H4	67 aa		3.95	□□□□□ -1.78
SYNE2-222	ENST00000556725		K7ERJ3	54 aa		3.95	□□□□□ -1.78
SYNE2-222	ENST00000556725		K7ERU9	68 aa		3.95	□□□□□ -1.78
SYNE2-222	ENST00000556725	KRTAP4-4	Q9BYR3	166 aa		3.95	□□□□□ -1.78
SYNE2-222	ENST00000556725		A0A1B0GVX0	72 aa		3.94	□□□□□ -1.78
SYNE2-222	ENST00000556725	C8orf87	E5RJ46	101 aa		3.94	□□□□□ -1.78
SYNE2-222	ENST00000556725	ANKRD29	Q8N6D5	301 aa		3.94	□□□□□ -1.78
SYNE2-222	ENST00000556725		H0YGX0	51 aa		3.93	□□□□□ -1.78
SYNE2-222	ENST00000556725	SNCG	O76070	127 aa		3.93	□□□□□ -1.78
SYNE2-222	ENST00000556725	COX6C	P09669	75 aa		3.93	□□□□□ -1.78
SYNE2-222	ENST00000556725		J3QR89	54 aa		3.92	□□□□□ -1.78
SYNE2-222	ENST00000556725	KRTAP10-5	P60370	271 aa		3.92	□□□□□ -1.78
SYNE2-222	ENST00000556725	H1FX-AS1	Q4G0G2	97 aa		3.92	□□□□□ -1.78
SYNE2-222	ENST00000556725	NAA38	Q9BRA0	125 aa	Known RBP	3.91	□□□□□ -1.78
SYNE2-222	ENST00000556725	CCK	P06307	115 aa		3.9	□□□□□ -1.79
SYNE2-222	ENST00000556725	PSMB2	P49721	201 aa		3.9	□□□□□ -1.79
SYNE2-222	ENST00000556725	ATXN8	Q156A1	80 aa		3.9	□□□□□ -1.79
SYNE2-222	ENST00000556725	TRAC	P01848	142 aa		3.89	□□□□□ -1.79
SYNE2-222	ENST00000556725	SCGB1C2	P0DMR2	95 aa		3.89	□□□□□ -1.79
SYNE2-222	ENST00000556725		Q5VV11	94 aa		3.89	□□□□□ -1.79
SYNE2-222	ENST00000556725	PRO0461	Q9UI25	63 aa		3.89	□□□□□ -1.79
SYNE2-222	ENST00000556725		A0A1B0GX51	115 aa		3.88	□□□□□ -1.79
SYNE2-222	ENST00000556725		H3BT86	120 aa		3.88	□□□□□ -1.79
SYNE2-222	ENST00000556725	KRTAP19-8	Q3LI54	63 aa		3.88	□□□□□ -1.79
SYNE2-222	ENST00000556725	IGKV3D-7	A0A0C4DH55	119 aa		3.85	□□□□□ -1.79
SYNE2-222	ENST00000556725		C9JAW5	83 aa		3.85	□□□□□ -1.79
SYNE2-222	ENST00000556725	VPS25	Q9BRG1	176 aa		3.85	□□□□□ -1.79
SYNE2-222	ENST00000556725	ETDB	Q3ZM63	59 aa		3.84	□□□□□ -1.79
SYNE2-222	ENST00000556725	SPRR2G	Q9BYE4	73 aa		3.84	□□□□□ -1.79
SYNE2-222	ENST00000556725	C8orf17	Q9NRJ1	99 aa		3.84	□□□□□ -1.79
SYNE2-222	ENST00000556725	ORMDL1	Q9P0S3	153 aa		3.84	□□□□□ -1.79
SYNE2-222	ENST00000556725	FAM236A	A0A1B0GUQ0	79 aa		3.83	□□□□□ -1.8
SYNE2-222	ENST00000556725	FAM236B	A0A1B0GV22	79 aa		3.83	□□□□□ -1.8

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