RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 WWC2-AS2Q96NR7 200 aa8.95□□□□□ -0.98
CUX1-215ENST00000556210 TYMSOSQ8TAI1 123 aa8.94□□□□□ -0.98
CUX1-215ENST00000556210 A0A087X002 238 aa8.93□□□□□ -0.98
CUX1-215ENST00000556210 Q6ZRN7 208 aaPredicted RBP8.93□□□□□ -0.98
CUX1-215ENST00000556210 NOTCH2NLQ7Z3S9 236 aa8.93□□□□□ -0.98
CUX1-215ENST00000556210 PRR26Q8N8Z3 221 aa8.92□□□□□ -0.98
CUX1-215ENST00000556210 SPRR1BP22528 89 aa8.9□□□□□ -0.99
CUX1-215ENST00000556210 ACYP2P14621 99 aa8.89□□□□□ -0.99
CUX1-215ENST00000556210 Q96NJ1 140 aa8.89□□□□□ -0.99
CUX1-215ENST00000556210 Q75L30 129 aa8.89□□□□□ -0.99
CUX1-215ENST00000556210 CDC42SE1Q9NRR8 79 aa8.88□□□□□ -0.99
CUX1-215ENST00000556210 FLG2Q5D862 2391 aaPredicted RBP8.88□□□□□ -0.99
CUX1-215ENST00000556210 PLAC8Q9NZF1 115 aa8.87□□□□□ -0.99
CUX1-215ENST00000556210 A0A1B0GU69 56 aa8.86□□□□□ -0.99
CUX1-215ENST00000556210 C9orf92A6NGG3 77 aa8.85□□□□□ -0.99
CUX1-215ENST00000556210 MEGF8Q7Z7M0 2845 aa8.85□□□□□ -0.99
CUX1-215ENST00000556210 C7orf65Q6ZTY9 151 aa8.84□□□□□ -0.99
CUX1-215ENST00000556210 LCA10Q71F78 164 aa8.83□□□□□ -1
CUX1-215ENST00000556210 SSBP3-AS1Q7Z2R9 100 aa8.83□□□□□ -1
CUX1-215ENST00000556210 PRAC1Q96KF2 57 aa8.83□□□□□ -1
CUX1-215ENST00000556210 HRES1P13985 223 aa8.83□□□□□ -1
CUX1-215ENST00000556210 KRTAP10-1P60331 282 aa8.82□□□□□ -1
CUX1-215ENST00000556210 SPINK7P58062 85 aa8.81□□□□□ -1
CUX1-215ENST00000556210 LINC01558Q9Y6Z2 57 aa8.81□□□□□ -1
CUX1-215ENST00000556210 H3BS24 57 aa8.8□□□□□ -1
CUX1-215ENST00000556210 Q6ZR54 194 aa8.8□□□□□ -1
CUX1-215ENST00000556210 C8orf87E5RJ46 101 aa8.76□□□□□ -1.01
CUX1-215ENST00000556210 FAM229AH3BQW9 127 aa8.75□□□□□ -1.01
CUX1-215ENST00000556210 KRTAP13-1Q8IUC0 172 aa8.75□□□□□ -1.01
CUX1-215ENST00000556210 Q8N1X5 172 aa8.74□□□□□ -1.01
CUX1-215ENST00000556210 Q5W150 140 aa8.73□□□□□ -1.01
CUX1-215ENST00000556210 ANK2Q01484 3957 aa8.71□□□□□ -1.01
CUX1-215ENST00000556210 LINC00304Q8N9R0 145 aa8.7□□□□□ -1.02
CUX1-215ENST00000556210 LINC00483Q53H64 154 aa8.69□□□□□ -1.02
CUX1-215ENST00000556210 UQCR11O14957 56 aa8.65□□□□□ -1.02
CUX1-215ENST00000556210 MIR22HGQ0VDD5 57 aa8.65□□□□□ -1.03
CUX1-215ENST00000556210 HUWE1Q7Z6Z7 4374 aaKnown RBP8.64□□□□□ -1.03
CUX1-215ENST00000556210 DNAH10Q8IVF4 4471 aa8.62□□□□□ -1.03
CUX1-215ENST00000556210 A6NN06 94 aa8.62□□□□□ -1.03
CUX1-215ENST00000556210 K7ERS5 55 aa8.6□□□□□ -1.03
CUX1-215ENST00000556210 KRTAP13-2Q52LG2 175 aa8.59□□□□□ -1.03
CUX1-215ENST00000556210 LINC01554Q52M75 96 aa8.58□□□□□ -1.04
CUX1-215ENST00000556210 LYSTQ99698 3801 aa8.51□□□□□ -1.05
CUX1-215ENST00000556210 DMAC1Q96GE9 116 aa8.49□□□□□ -1.05
CUX1-215ENST00000556210 ADM2Q7Z4H4 148 aa8.48□□□□□ -1.05
CUX1-215ENST00000556210 ASB16-AS1Q495Z4 193 aa8.47□□□□□ -1.05
CUX1-215ENST00000556210 CSAG1Q6PB30 78 aa8.46□□□□□ -1.06
CUX1-215ENST00000556210 SPINT4Q6UDR6 99 aa8.42□□□□□ -1.06
CUX1-215ENST00000556210 PLECQ15149 4684 aaKnown RBP8.41□□□□□ -1.06
CUX1-215ENST00000556210 CRIPTQ9P021 101 aa8.39□□□□□ -1.07
CUX1-215ENST00000556210 DNAH9Q9NYC9 4486 aa8.37□□□□□ -1.07
CUX1-215ENST00000556210 SPATA8Q6RVD6 105 aa8.34□□□□□ -1.07
CUX1-215ENST00000556210 KRTAP1-4P0C5Y4 121 aa8.33□□□□□ -1.08
CUX1-215ENST00000556210 A0A0D9SG42 100 aa8.28□□□□□ -1.08
CUX1-215ENST00000556210 Q6ZSA8 131 aa8.28□□□□□ -1.08
CUX1-215ENST00000556210 DNHD1Q96M86 4753 aa8.27□□□□□ -1.09
CUX1-215ENST00000556210 PRKDCP78527 4128 aaKnown RBP8.26□□□□□ -1.09
CUX1-215ENST00000556210 STARD9Q9P2P6 4700 aa8.25□□□□□ -1.09
CUX1-215ENST00000556210 A0A1B0GU33 70 aa8.23□□□□□ -1.09
CUX1-215ENST00000556210 KRTAP13-3Q3SY46 172 aa8.21□□□□□ -1.09
CUX1-215ENST00000556210 KMT2AQ03164 3969 aa8.21□□□□□ -1.09
CUX1-215ENST00000556210 Q5VSD8 79 aa8.21□□□□□ -1.1
CUX1-215ENST00000556210 DNAH7Q8WXX0 4024 aa8.19□□□□□ -1.1
CUX1-215ENST00000556210 DNAH1Q9P2D7 4330 aa8.19□□□□□ -1.1
CUX1-215ENST00000556210 DNAH11Q96DT5 4516 aa8.18□□□□□ -1.1
CUX1-215ENST00000556210 CMYA5Q8N3K9 4069 aa8.15□□□□□ -1.11
CUX1-215ENST00000556210 KRTAP16-1A8MUX0 517 aa8.12□□□□□ -1.11
CUX1-215ENST00000556210 FRAS1Q86XX4 4008 aa8.05□□□□□ -1.12
CUX1-215ENST00000556210 H1FX-AS1Q4G0G2 97 aa8.03□□□□□ -1.12
CUX1-215ENST00000556210 J3QL48 77 aa8.02□□□□□ -1.12
CUX1-215ENST00000556210 DNAH8Q96JB1 4490 aa8.02□□□□□ -1.13
CUX1-215ENST00000556210 DNAH3Q8TD57 4116 aa7.98□□□□□ -1.13
CUX1-215ENST00000556210 COX6B2Q6YFQ2 88 aa7.98□□□□□ -1.13
CUX1-215ENST00000556210 LRP1BQ9NZR2 4599 aa7.98□□□□□ -1.13
CUX1-215ENST00000556210 VPS13DQ5THJ4 4388 aa7.95□□□□□ -1.14
CUX1-215ENST00000556210 KRTAP25-1Q3LHN0 102 aa7.95□□□□□ -1.14
CUX1-215ENST00000556210 FAT1Q14517 4588 aa7.94□□□□□ -1.14
CUX1-215ENST00000556210 H0YAA0 97 aa7.94□□□□□ -1.14
CUX1-215ENST00000556210 A8MUU9 505 aa7.93□□□□□ -1.14
CUX1-215ENST00000556210 DNAH6Q9C0G6 4158 aa7.92□□□□□ -1.14
CUX1-215ENST00000556210 S4R3F8 94 aa7.92□□□□□ -1.14
CUX1-215ENST00000556210 C20orf166-AS1Q96NR2 134 aa7.91□□□□□ -1.14
CUX1-215ENST00000556210 DNAH5Q8TE73 4624 aa7.91□□□□□ -1.14
CUX1-215ENST00000556210 DNAH17Q9UFH2 4485 aa7.9□□□□□ -1.14
CUX1-215ENST00000556210 RPS29P62273 56 aaKnown RBP7.9□□□□□ -1.15
CUX1-215ENST00000556210 ROMO1P60602 79 aa7.87□□□□□ -1.15
CUX1-215ENST00000556210 DNAH2Q9P225 4427 aa7.86□□□□□ -1.15
CUX1-215ENST00000556210 RPL37P61927 97 aaKnown RBP7.85□□□□□ -1.15
CUX1-215ENST00000556210 A0A1B0GVY2 172 aa7.83□□□□□ -1.16
CUX1-215ENST00000556210 NDUFAF8A1L188 74 aa7.83□□□□□ -1.16
CUX1-215ENST00000556210 KRTAP21-3Q3LHN1 58 aa7.81□□□□□ -1.16
CUX1-215ENST00000556210 XP32Q5T750 250 aa7.77□□□□□ -1.17
CUX1-215ENST00000556210 HECTD4Q9Y4D8 3996 aa7.75□□□□□ -1.17
CUX1-215ENST00000556210 KRTAP3-1Q9BYR8 98 aa7.75□□□□□ -1.17
CUX1-215ENST00000556210 HYDINQ4G0P3 5121 aa7.75□□□□□ -1.17
CUX1-215ENST00000556210 VPS13BQ7Z7G8 4022 aa7.73□□□□□ -1.17
CUX1-215ENST00000556210 MYCBP2O75592 4640 aa7.72□□□□□ -1.17
CUX1-215ENST00000556210 DYNC2H1Q8NCM8 4307 aaKnown RBP7.67□□□□□ -1.18
CUX1-215ENST00000556210 DYNC1H1Q14204 4646 aaKnown RBP7.66□□□□□ -1.18
CUX1-215ENST00000556210 PKHD1P08F94 4074 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms