RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 SRRM2Q9UQ35 2752 aaKnown RBP5.6□□□□□ -1.51
SIX4-202ENST00000554079 CSMD3Q7Z407 3707 aa5.6□□□□□ -1.51
SIX4-202ENST00000554079 DNAH10OSP0CZ25 163 aa5.59□□□□□ -1.51
SIX4-202ENST00000554079 LINC00304Q8N9R0 145 aa5.59□□□□□ -1.51
SIX4-202ENST00000554079 COL6A5A8TX70 2615 aa5.58□□□□□ -1.52
SIX4-202ENST00000554079 CHTF8P0CG12 524 aa5.58□□□□□ -1.52
SIX4-202ENST00000554079 DNHD1Q96M86 4753 aa5.57□□□□□ -1.52
SIX4-202ENST00000554079 CDK2AP2O75956 126 aa5.57□□□□□ -1.52
SIX4-202ENST00000554079 TRRAPQ9Y4A5 3859 aa5.57□□□□□ -1.52
SIX4-202ENST00000554079 KRTAP10-3P60369 221 aa5.55□□□□□ -1.52
SIX4-202ENST00000554079 PKD1L1Q8TDX9 2849 aa5.54□□□□□ -1.52
SIX4-202ENST00000554079 H0YAA0 97 aa5.53□□□□□ -1.52
SIX4-202ENST00000554079 KRTAP13-1Q8IUC0 172 aa5.53□□□□□ -1.52
SIX4-202ENST00000554079 ANK2Q01484 3957 aa5.53□□□□□ -1.52
SIX4-202ENST00000554079 IGLV9-49A0A0B4J1Y8 123 aa5.52□□□□□ -1.53
SIX4-202ENST00000554079 IGKV2-30P06310 120 aa5.52□□□□□ -1.53
SIX4-202ENST00000554079 STAB1Q9NY15 2570 aa5.5□□□□□ -1.53
SIX4-202ENST00000554079 LY6G6CO95867 125 aa5.49□□□□□ -1.53
SIX4-202ENST00000554079 TENM1Q9UKZ4 2725 aa5.49□□□□□ -1.53
SIX4-202ENST00000554079 Q6ZSA8 131 aa5.48□□□□□ -1.53
SIX4-202ENST00000554079 VWFP04275 2813 aa5.48□□□□□ -1.53
SIX4-202ENST00000554079 FAM229AH3BQW9 127 aa5.47□□□□□ -1.53
SIX4-202ENST00000554079 CRIPTQ9P021 101 aa5.46□□□□□ -1.54
SIX4-202ENST00000554079 PANO1I0J062 215 aa5.45□□□□□ -1.54
SIX4-202ENST00000554079 C20orf166-AS1Q96NR2 134 aa5.45□□□□□ -1.54
SIX4-202ENST00000554079 A0A087WTM6 91 aa5.44□□□□□ -1.54
SIX4-202ENST00000554079 KRTAP16-1A8MUX0 517 aa5.44□□□□□ -1.54
SIX4-202ENST00000554079 WWC2-AS2Q96NR7 200 aa5.44□□□□□ -1.54
SIX4-202ENST00000554079 IGKV2D-30A0A075B6S6 120 aa5.43□□□□□ -1.54
SIX4-202ENST00000554079 NDUFAF8A1L188 74 aa5.43□□□□□ -1.54
SIX4-202ENST00000554079 NUPR2A6NF83 97 aa5.42□□□□□ -1.54
SIX4-202ENST00000554079 SPINK6Q6UWN8 80 aa5.41□□□□□ -1.54
SIX4-202ENST00000554079 PSORS1C2Q9UIG4 136 aa5.41□□□□□ -1.54
SIX4-202ENST00000554079 KRTAP15-1Q3LI76 137 aa5.41□□□□□ -1.54
SIX4-202ENST00000554079 LYSTQ99698 3801 aa5.4□□□□□ -1.55
SIX4-202ENST00000554079 DNAH10Q8IVF4 4471 aa5.4□□□□□ -1.55
SIX4-202ENST00000554079 FBN3Q75N90 2809 aa5.39□□□□□ -1.55
SIX4-202ENST00000554079 CMYA5Q8N3K9 4069 aa5.39□□□□□ -1.55
SIX4-202ENST00000554079 SSBP3-AS1Q7Z2R9 100 aa5.38□□□□□ -1.55
SIX4-202ENST00000554079 SPINT4Q6UDR6 99 aa5.38□□□□□ -1.55
SIX4-202ENST00000554079 FRAS1Q86XX4 4008 aa5.37□□□□□ -1.55
SIX4-202ENST00000554079 FLG2Q5D862 2391 aaPredicted RBP5.36□□□□□ -1.55
SIX4-202ENST00000554079 SPINK1P00995 79 aa5.36□□□□□ -1.55
SIX4-202ENST00000554079 TENM3Q9P273 2699 aa5.36□□□□□ -1.55
SIX4-202ENST00000554079 NBEAL1Q6ZS30 2694 aa5.35□□□□□ -1.55
SIX4-202ENST00000554079 MGAM2Q2M2H8 2515 aa5.35□□□□□ -1.55
SIX4-202ENST00000554079 A0A1B0GU33 70 aa5.35□□□□□ -1.55
SIX4-202ENST00000554079 TYMSOSQ8TAI1 123 aa5.35□□□□□ -1.55
SIX4-202ENST00000554079 MEGF8Q7Z7M0 2845 aa5.35□□□□□ -1.55
SIX4-202ENST00000554079 H1FX-AS1Q4G0G2 97 aa5.34□□□□□ -1.55
SIX4-202ENST00000554079 C14orf177Q52M58 125 aa5.34□□□□□ -1.55
SIX4-202ENST00000554079 ANAPC11Q9NYG5 84 aa5.33□□□□□ -1.56
SIX4-202ENST00000554079 TPRXLQ17RH7 258 aa5.33□□□□□ -1.56
SIX4-202ENST00000554079 KRTAP1-5Q9BYS1 174 aa5.32□□□□□ -1.56
SIX4-202ENST00000554079 COL7A1Q02388 2944 aa5.31□□□□□ -1.56
SIX4-202ENST00000554079 DNAH9Q9NYC9 4486 aa5.28□□□□□ -1.56
SIX4-202ENST00000554079 DNAH8Q96JB1 4490 aa5.28□□□□□ -1.56
SIX4-202ENST00000554079 K7ERS5 55 aa5.28□□□□□ -1.56
SIX4-202ENST00000554079 KRTAP10-11P60412 298 aa5.28□□□□□ -1.56
SIX4-202ENST00000554079 Q8N1X5 172 aa5.28□□□□□ -1.56
SIX4-202ENST00000554079 NOTCH1P46531 2555 aa5.27□□□□□ -1.57
SIX4-202ENST00000554079 DNAH3Q8TD57 4116 aa5.25□□□□□ -1.57
SIX4-202ENST00000554079 CIRBP-AS1Q8TBR5 109 aa5.24□□□□□ -1.57
SIX4-202ENST00000554079 J3QL48 77 aa5.23□□□□□ -1.57
SIX4-202ENST00000554079 SPACA4Q8TDM5 124 aa5.23□□□□□ -1.57
SIX4-202ENST00000554079 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.23□□□□□ -1.57
SIX4-202ENST00000554079 PRKDCP78527 4128 aaKnown RBP5.22□□□□□ -1.57
SIX4-202ENST00000554079 C10orf95Q9H7T3 257 aa5.2□□□□□ -1.58
SIX4-202ENST00000554079 NBDYA0A0U1RRE5 68 aa5.19□□□□□ -1.58
SIX4-202ENST00000554079 COX6B2Q6YFQ2 88 aa5.19□□□□□ -1.58
SIX4-202ENST00000554079 LUZP6Q538Z0 58 aa5.18□□□□□ -1.58
SIX4-202ENST00000554079 TGP01266 2768 aa5.16□□□□□ -1.58
SIX4-202ENST00000554079 DNAH17Q9UFH2 4485 aa5.14□□□□□ -1.59
SIX4-202ENST00000554079 RPL37P61927 97 aaKnown RBP5.13□□□□□ -1.59
SIX4-202ENST00000554079 KRTAP3-1Q9BYR8 98 aa5.13□□□□□ -1.59
SIX4-202ENST00000554079 HUWE1Q7Z6Z7 4374 aaKnown RBP5.11□□□□□ -1.59
SIX4-202ENST00000554079 HECTD4Q9Y4D8 3996 aa5.1□□□□□ -1.59
SIX4-202ENST00000554079 DNAH7Q8WXX0 4024 aa5.1□□□□□ -1.59
SIX4-202ENST00000554079 VPS13DQ5THJ4 4388 aa5.09□□□□□ -1.59
SIX4-202ENST00000554079 Q6ZRN7 208 aaPredicted RBP5.09□□□□□ -1.6
SIX4-202ENST00000554079 KRTAP13-4Q3LI77 160 aa5.06□□□□□ -1.6
SIX4-202ENST00000554079 KRTAP13-2Q52LG2 175 aa5.06□□□□□ -1.6
SIX4-202ENST00000554079 UBE2DNLQ8IWF7 75 aa5.06□□□□□ -1.6
SIX4-202ENST00000554079 DYNC2H1Q8NCM8 4307 aaKnown RBP5.04□□□□□ -1.6
SIX4-202ENST00000554079 KMT2AQ03164 3969 aa5.02□□□□□ -1.61
SIX4-202ENST00000554079 KRTAP10-6P60371 365 aaPredicted RBP5.01□□□□□ -1.61
SIX4-202ENST00000554079 APLNQ9ULZ1 77 aa5.01□□□□□ -1.61
SIX4-202ENST00000554079 STAB2Q8WWQ8 2551 aa5.01□□□□□ -1.61
SIX4-202ENST00000554079 A0A0D9SG42 100 aa5□□□□□ -1.61
SIX4-202ENST00000554079 DNAH6Q9C0G6 4158 aa5□□□□□ -1.61
SIX4-202ENST00000554079 LCE2BO14633 110 aa4.98□□□□□ -1.61
SIX4-202ENST00000554079 S4R3F8 94 aa4.97□□□□□ -1.61
SIX4-202ENST00000554079 XP32Q5T750 250 aa4.96□□□□□ -1.62
SIX4-202ENST00000554079 STARD9Q9P2P6 4700 aa4.96□□□□□ -1.62
SIX4-202ENST00000554079 KMT2CQ8NEZ4 4911 aaKnown RBP4.95□□□□□ -1.62
SIX4-202ENST00000554079 SEC61BP60468 96 aaKnown RBP4.93□□□□□ -1.62
SIX4-202ENST00000554079 KRTAP12-2P59991 146 aa4.92□□□□□ -1.62
SIX4-202ENST00000554079 PLECQ15149 4684 aaKnown RBP4.92□□□□□ -1.62
SIX4-202ENST00000554079 SACSQ9NZJ4 4579 aa4.9□□□□□ -1.62
SIX4-202ENST00000554079 RYR3Q15413 4870 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms