RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 LINC00575Q6W349 94 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 SMIM11BQ8TCY0 68 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 BRK1Q8WUW1 75 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 PRR15LQ9BU68 103 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 CYP4F30PQ9H0H9 118 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 PLAC8Q9NZF1 115 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 ROS1P08922 2347 aa0.84□□□□□ -2.28
LIMA1-209ENST00000552008 NF1P21359 2839 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 SETXQ7Z333 2677 aaKnown RBP0.83□□□□□ -2.28
LIMA1-209ENST00000552008 AKAP6Q13023 2319 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.83□□□□□ -2.28
LIMA1-209ENST00000552008 PLCE1Q9P212 2302 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 ITPR2Q14571 2701 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 MXRA5Q9NR99 2828 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 CCKP06307 115 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 FXYD2P54710 66 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 ELOF1P60002 83 aaKnown RBP0.83□□□□□ -2.28
LIMA1-209ENST00000552008 HAMPP81172 84 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 KLKP1Q107X0 134 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 Q6ZQY7 126 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 Q6ZRX8 168 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 PRR15Q8IV56 129 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 SPACA4Q8TDM5 124 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 ABCA1O95477 2261 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 HRNRQ86YZ3 2850 aaPredicted RBP0.83□□□□□ -2.28
LIMA1-209ENST00000552008 BSNQ9UPA5 3926 aa0.83□□□□□ -2.28
LIMA1-209ENST00000552008 DOPEY2Q9Y3R5 2298 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 TLN2Q9Y4G6 2542 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 CSPG4Q6UVK1 2322 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 CELSR1Q9NYQ6 3014 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 FN1P02751 2386 aaKnown RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 MAST4O15021 2626 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 TEP1Q99973 2627 aaKnown RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 FBN1P35555 2871 aaKnown RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 LOC110117498A0A087WWA1 95 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 A0A096LNI7 61 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 TRBV7-4A0A0J9YYF1 115 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 hDV103S1A0JD37 113 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 K7ERJ3 54 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 MT-ATP8P03928 68 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 WFDC2Q14508 124 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 KRTAP26-1Q6PEX3 210 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 Q6ZRN7 208 aaPredicted RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 Q6ZSA8 131 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 FP248Q71RG6 208 aaPredicted RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 PHF5AQ7RTV0 110 aaKnown RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 CLEC2BQ92478 149 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 TP53AIP1Q9HCN2 124 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 NSD1Q96L73 2696 aaPredicted RBP0.82□□□□□ -2.28
LIMA1-209ENST00000552008 JMJD1CQ15652 2540 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 ATRQ13535 2644 aa0.82□□□□□ -2.28
LIMA1-209ENST00000552008 CSMD2Q7Z408 3487 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 MTORP42345 2549 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SETD2Q9BYW2 2564 aaPredicted RBP0.81□□□□□ -2.28
LIMA1-209ENST00000552008 COL6A5A8TX70 2615 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 F8P00451 2351 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 IGKV3D-7A0A0C4DH55 119 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 HCG22E2RYF7 251 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SPRR1AP35321 89 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 RPS29P62273 56 aaKnown RBP0.81□□□□□ -2.28
LIMA1-209ENST00000552008 PRLHP81277 87 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SOSTDC1Q6X4U4 206 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 CASC2Q6XLA1 102 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 ATP11AUNQ6ZP68 121 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SPTSSBQ8NFR3 76 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SPRR4Q96PI1 79 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SVEP1Q4LDE5 3571 aa0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SPENQ96T58 3664 aaKnown RBP0.81□□□□□ -2.28
LIMA1-209ENST00000552008 SONP18583 2426 aaKnown RBP0.8□□□□□ -2.28
LIMA1-209ENST00000552008 IGLV5-48A0A075B6I7 105 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 SMR3BP02814 79 aaPredicted RBP0.8□□□□□ -2.28
LIMA1-209ENST00000552008 SPRR1BP22528 89 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 Q1T7F1 81 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 Q5VSD8 79 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 Q6ZQT0 140 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 C20orf197Q8N268 126 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 TMEM254Q8TBM7 123 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 C14orf132Q9NPU4 83 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 SNURFQ9Y675 71 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 C2CD3Q4AC94 2353 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 CSMD1Q96PZ7 3565 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 STAB1Q9NY15 2570 aa0.8□□□□□ -2.28
LIMA1-209ENST00000552008 ACANP16112 2415 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 WNK2Q9Y3S1 2297 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 A0A087WSZ3 146 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 Q5XG85 94 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 HRCT1Q6UXD1 115 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 RETNLBQ9BQ08 111 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 AKAP9Q99996 3911 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 WNK1Q9H4A3 2382 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 MEGF8Q7Z7M0 2845 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 ZANQ9Y493 2812 aa0.79□□□□□ -2.28
LIMA1-209ENST00000552008 VPS13CQ709C8 3753 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 CHKB-CPT1BH3BT56 60 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 LCA10Q71F78 164 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 WFDC13Q8IUB5 93 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 LINC00208Q96KT6 92 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 OBSCN-AS1Q96MR7 158 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 CYSTM1Q9H1C7 97 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 CDC42SE1Q9NRR8 79 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms