RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 Q6ZVQ6 151 aa7.47□□□□□ -1.21
PRPF40B-207ENST00000548399 LINC00472Q9H8W2 130 aa7.47□□□□□ -1.21
PRPF40B-207ENST00000548399 PCOTHQ58A44 107 aa7.46□□□□□ -1.22
PRPF40B-207ENST00000548399 Q96NJ1 140 aa7.46□□□□□ -1.22
PRPF40B-207ENST00000548399 RPL37P61927 97 aaKnown RBP7.45□□□□□ -1.22
PRPF40B-207ENST00000548399 KRTAP4-1Q9BYQ7 146 aa7.44□□□□□ -1.22
PRPF40B-207ENST00000548399 J3KT08 172 aa7.43□□□□□ -1.22
PRPF40B-207ENST00000548399 DEFB116Q30KQ4 102 aa7.43□□□□□ -1.22
PRPF40B-207ENST00000548399 SIGMAR1Q99720 223 aa7.43□□□□□ -1.22
PRPF40B-207ENST00000548399 IGKV4-1P06312 121 aa7.42□□□□□ -1.22
PRPF40B-207ENST00000548399 BPY2O14599 106 aa7.41□□□□□ -1.22
PRPF40B-207ENST00000548399 LINC00643Q86TS7 51 aa7.39□□□□□ -1.23
PRPF40B-207ENST00000548399 CXCL6P80162 114 aa7.37□□□□□ -1.23
PRPF40B-207ENST00000548399 Q75L30 129 aa7.37□□□□□ -1.23
PRPF40B-207ENST00000548399 A8MWP4 228 aa7.36□□□□□ -1.23
PRPF40B-207ENST00000548399 NDUFB1O75438 58 aa7.36□□□□□ -1.23
PRPF40B-207ENST00000548399 DSCR10P59022 87 aa7.36□□□□□ -1.23
PRPF40B-207ENST00000548399 ATP5EP2Q5VTU8 51 aa7.36□□□□□ -1.23
PRPF40B-207ENST00000548399 ATP11AUNQ6ZP68 121 aa7.35□□□□□ -1.23
PRPF40B-207ENST00000548399 IGKV3D-7A0A0C4DH55 119 aa7.33□□□□□ -1.24
PRPF40B-207ENST00000548399 FAT4Q6V0I7 4981 aa7.33□□□□□ -1.24
PRPF40B-207ENST00000548399 A0A1B0GVX0 72 aa7.32□□□□□ -1.24
PRPF40B-207ENST00000548399 LINC00313P59037 77 aa7.32□□□□□ -1.24
PRPF40B-207ENST00000548399 LCE2AQ5TA79 106 aaPredicted RBP7.32□□□□□ -1.24
PRPF40B-207ENST00000548399 PRR15Q8IV56 129 aa7.32□□□□□ -1.24
PRPF40B-207ENST00000548399 C20orf166-AS1Q96NR2 134 aa7.32□□□□□ -1.24
PRPF40B-207ENST00000548399 IGHV6-1A0A0B4J1U7 121 aa7.31□□□□□ -1.24
PRPF40B-207ENST00000548399 K7EQZ3 153 aa7.31□□□□□ -1.24
PRPF40B-207ENST00000548399 A8MUU9 505 aa7.3□□□□□ -1.24
PRPF40B-207ENST00000548399 Q8N9L7 120 aa7.29□□□□□ -1.24
PRPF40B-207ENST00000548399 C8orf87E5RJ46 101 aa7.28□□□□□ -1.24
PRPF40B-207ENST00000548399 NOTCH2NLQ7Z3S9 236 aa7.27□□□□□ -1.25
PRPF40B-207ENST00000548399 KRTAP16-1A8MUX0 517 aa7.26□□□□□ -1.25
PRPF40B-207ENST00000548399 MT-ATP8P03928 68 aa7.25□□□□□ -1.25
PRPF40B-207ENST00000548399 HIST1H4AP62805 103 aaKnown RBP7.25□□□□□ -1.25
PRPF40B-207ENST00000548399 C8orf17Q9NRJ1 99 aa7.25□□□□□ -1.25
PRPF40B-207ENST00000548399 KRTAP19-2Q3LHN2 52 aa7.23□□□□□ -1.25
PRPF40B-207ENST00000548399 LCE2CQ5TA81 110 aa7.23□□□□□ -1.25
PRPF40B-207ENST00000548399 MMP24-AS1A0A0U1RRL7 71 aa7.22□□□□□ -1.25
PRPF40B-207ENST00000548399 IMUPQ9GZP8 106 aa7.22□□□□□ -1.25
PRPF40B-207ENST00000548399 HCG22E2RYF7 251 aa7.21□□□□□ -1.26
PRPF40B-207ENST00000548399 hDV103S1A0JD37 113 aa7.2□□□□□ -1.26
PRPF40B-207ENST00000548399 CASC2Q6XLA1 102 aa7.19□□□□□ -1.26
PRPF40B-207ENST00000548399 COX6B2Q6YFQ2 88 aa7.19□□□□□ -1.26
PRPF40B-207ENST00000548399 WFDC13Q8IUB5 93 aa7.19□□□□□ -1.26
PRPF40B-207ENST00000548399 TMEM254Q8TBM7 123 aa7.19□□□□□ -1.26
PRPF40B-207ENST00000548399 A0A087WVE0 104 aa7.18□□□□□ -1.26
PRPF40B-207ENST00000548399 MRPL34Q9BQ48 92 aaKnown RBP7.17□□□□□ -1.26
PRPF40B-207ENST00000548399 MT1HP80294 61 aa7.14□□□□□ -1.27
PRPF40B-207ENST00000548399 Q8N9P0 234 aaPredicted RBP7.13□□□□□ -1.27
PRPF40B-207ENST00000548399 NDUFS5O43920 106 aa7.1□□□□□ -1.27
PRPF40B-207ENST00000548399 ZCCHC13Q8WW36 166 aaKnown RBP7.1□□□□□ -1.27
PRPF40B-207ENST00000548399 SCGB1A1P11684 91 aa7.07□□□□□ -1.28
PRPF40B-207ENST00000548399 FAM236AA0A1B0GUQ0 79 aa7.06□□□□□ -1.28
PRPF40B-207ENST00000548399 FAM236BA0A1B0GV22 79 aa7.06□□□□□ -1.28
PRPF40B-207ENST00000548399 M0R2T5 61 aa7.06□□□□□ -1.28
PRPF40B-207ENST00000548399 TP53AIP1Q9HCN2 124 aa7.06□□□□□ -1.28
PRPF40B-207ENST00000548399 HRES1P13985 223 aa7.01□□□□□ -1.29
PRPF40B-207ENST00000548399 RBM12B-AS1Q9P1G2 102 aa7.01□□□□□ -1.29
PRPF40B-207ENST00000548399 FAM236DA0A1B0GTK5 79 aa7□□□□□ -1.29
PRPF40B-207ENST00000548399 UQCRQO14949 82 aa7□□□□□ -1.29
PRPF40B-207ENST00000548399 FAM236CP0DP71 79 aa7□□□□□ -1.29
PRPF40B-207ENST00000548399 SPINK7P58062 85 aa7□□□□□ -1.29
PRPF40B-207ENST00000548399 KRTAP9-2Q9BYQ4 174 aa7□□□□□ -1.29
PRPF40B-207ENST00000548399 OCR1Q9BZK8 76 aa7□□□□□ -1.29
PRPF40B-207ENST00000548399 ATOX1O00244 68 aa6.99□□□□□ -1.29
PRPF40B-207ENST00000548399 SMIM20Q8N5G0 67 aa6.99□□□□□ -1.29
PRPF40B-207ENST00000548399 MPLKIPQ8TAP9 179 aa6.98□□□□□ -1.29
PRPF40B-207ENST00000548399 KRTAP10-6P60371 365 aaPredicted RBP6.97□□□□□ -1.29
PRPF40B-207ENST00000548399 LORP23490 312 aaPredicted RBP6.96□□□□□ -1.3
PRPF40B-207ENST00000548399 Q5W150 140 aa6.96□□□□□ -1.3
PRPF40B-207ENST00000548399 TRAV7A0A075B6U4 112 aa6.94□□□□□ -1.3
PRPF40B-207ENST00000548399 TRAV22A0A0B4J277 110 aa6.94□□□□□ -1.3
PRPF40B-207ENST00000548399 C5orf47Q569G3 176 aa6.93□□□□□ -1.3
PRPF40B-207ENST00000548399 FLGP20930 4061 aaPredicted RBP6.93□□□□□ -1.3
PRPF40B-207ENST00000548399 H0Y9P7 68 aa6.91□□□□□ -1.3
PRPF40B-207ENST00000548399 MP68P56378 58 aa6.9□□□□□ -1.3
PRPF40B-207ENST00000548399 SERP2Q8N6R1 65 aa6.9□□□□□ -1.3
PRPF40B-207ENST00000548399 LCE2DQ5TA82 110 aaPredicted RBP6.89□□□□□ -1.31
PRPF40B-207ENST00000548399 IGKV2D-30A0A075B6S6 120 aa6.86□□□□□ -1.31
PRPF40B-207ENST00000548399 H3BPC8 53 aa6.86□□□□□ -1.31
PRPF40B-207ENST00000548399 IGKV2-30P06310 120 aa6.86□□□□□ -1.31
PRPF40B-207ENST00000548399 LOC101927531A0A1B0GV80 90 aa6.85□□□□□ -1.31
PRPF40B-207ENST00000548399 C7orf65Q6ZTY9 151 aa6.85□□□□□ -1.31
PRPF40B-207ENST00000548399 ANAPC13Q9BS18 74 aa6.85□□□□□ -1.31
PRPF40B-207ENST00000548399 C1orf64Q8NEQ6 169 aa6.84□□□□□ -1.31
PRPF40B-207ENST00000548399 LINC00208Q96KT6 92 aa6.84□□□□□ -1.31
PRPF40B-207ENST00000548399 COX7CP15954 63 aa6.82□□□□□ -1.32
PRPF40B-207ENST00000548399 CYP4F30PQ9H0H9 118 aa6.81□□□□□ -1.32
PRPF40B-207ENST00000548399 C20orf197Q8N268 126 aa6.77□□□□□ -1.33
PRPF40B-207ENST00000548399 KRTAP9-8Q9BYQ0 159 aa6.77□□□□□ -1.33
PRPF40B-207ENST00000548399 H1FX-AS1Q4G0G2 97 aa6.74□□□□□ -1.33
PRPF40B-207ENST00000548399 SNURFQ9Y675 71 aa6.74□□□□□ -1.33
PRPF40B-207ENST00000548399 KLKP1Q107X0 134 aa6.73□□□□□ -1.33
PRPF40B-207ENST00000548399 KRTAP9-6A0A140TA67 174 aa6.72□□□□□ -1.33
PRPF40B-207ENST00000548399 MT2AP02795 61 aa6.71□□□□□ -1.34
PRPF40B-207ENST00000548399 C4orf26Q17RF5 130 aa6.71□□□□□ -1.34
PRPF40B-207ENST00000548399 FSIP2Q5CZC0 6907 aa6.7□□□□□ -1.34
PRPF40B-207ENST00000548399 CCDC179H3BU77 68 aa6.68□□□□□ -1.34
PRPF40B-207ENST00000548399 NDUFC1O43677 76 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms