RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 PLAC8Q9NZF1 115 aa5.95□□□□□ -1.46
CLIP1-212ENST00000540304 A0A1B0GW54 56 aa5.95□□□□□ -1.46
CLIP1-212ENST00000540304 KRTAP13-1Q8IUC0 172 aa5.95□□□□□ -1.46
CLIP1-212ENST00000540304 DNAH11Q96DT5 4516 aa5.94□□□□□ -1.46
CLIP1-212ENST00000540304 A0A1W2PNM2 257 aa5.94□□□□□ -1.46
CLIP1-212ENST00000540304 SPRR1BP22528 89 aa5.94□□□□□ -1.46
CLIP1-212ENST00000540304 Q8NBF4 154 aa5.94□□□□□ -1.46
CLIP1-212ENST00000540304 FAM30AQ9NZY2 134 aa5.94□□□□□ -1.46
CLIP1-212ENST00000540304 ALMS1Q8TCU4 4167 aa5.94□□□□□ -1.46
CLIP1-212ENST00000540304 IGKV4-1P06312 121 aa5.92□□□□□ -1.46
CLIP1-212ENST00000540304 LORP23490 312 aaPredicted RBP5.92□□□□□ -1.46
CLIP1-212ENST00000540304 ZCCHC13Q8WW36 166 aaKnown RBP5.92□□□□□ -1.46
CLIP1-212ENST00000540304 RETNLBQ9BQ08 111 aa5.92□□□□□ -1.46
CLIP1-212ENST00000540304 IGLV8-61A0A075B6I0 122 aa5.92□□□□□ -1.46
CLIP1-212ENST00000540304 SPRR4Q96PI1 79 aa5.91□□□□□ -1.46
CLIP1-212ENST00000540304 FAT2Q9NYQ8 4349 aa5.91□□□□□ -1.46
CLIP1-212ENST00000540304 KRTAP10-2P60368 255 aa5.9□□□□□ -1.46
CLIP1-212ENST00000540304 IGFL1Q6UW32 110 aa5.9□□□□□ -1.46
CLIP1-212ENST00000540304 PSORS1C2Q9UIG4 136 aa5.9□□□□□ -1.46
CLIP1-212ENST00000540304 LOC101927531A0A1B0GV80 90 aa5.9□□□□□ -1.47
CLIP1-212ENST00000540304 LCE6AA0A183 80 aa5.89□□□□□ -1.47
CLIP1-212ENST00000540304 SACSQ9NZJ4 4579 aa5.88□□□□□ -1.47
CLIP1-212ENST00000540304 PKD1P98161 4303 aa5.87□□□□□ -1.47
CLIP1-212ENST00000540304 PLA2G1BP04054 148 aaKnown RBP5.87□□□□□ -1.47
CLIP1-212ENST00000540304 ZNF861PO60384 105 aa5.86□□□□□ -1.47
CLIP1-212ENST00000540304 CASC2Q6XLA1 102 aa5.86□□□□□ -1.47
CLIP1-212ENST00000540304 LINC00483Q53H64 154 aa5.85□□□□□ -1.47
CLIP1-212ENST00000540304 LINC00208Q96KT6 92 aa5.85□□□□□ -1.47
CLIP1-212ENST00000540304 SPINK7P58062 85 aa5.85□□□□□ -1.47
CLIP1-212ENST00000540304 CIRBP-AS1Q8TBR5 109 aa5.85□□□□□ -1.47
CLIP1-212ENST00000540304 PKHD1P08F94 4074 aa5.85□□□□□ -1.47
CLIP1-212ENST00000540304 IGHV6-1A0A0B4J1U7 121 aa5.84□□□□□ -1.47
CLIP1-212ENST00000540304 Q6ZSA8 131 aa5.84□□□□□ -1.47
CLIP1-212ENST00000540304 LRP1BQ9NZR2 4599 aa5.83□□□□□ -1.48
CLIP1-212ENST00000540304 IGLV7-43P04211 117 aa5.83□□□□□ -1.48
CLIP1-212ENST00000540304 KRTAP10-1P60331 282 aa5.83□□□□□ -1.48
CLIP1-212ENST00000540304 A0A087WSZ3 146 aa5.82□□□□□ -1.48
CLIP1-212ENST00000540304 DEFB116Q30KQ4 102 aa5.82□□□□□ -1.48
CLIP1-212ENST00000540304 IGLV9-49A0A0B4J1Y8 123 aa5.81□□□□□ -1.48
CLIP1-212ENST00000540304 ANAPC11Q9NYG5 84 aa5.81□□□□□ -1.48
CLIP1-212ENST00000540304 RPL37AP61513 92 aaKnown RBP5.8□□□□□ -1.48
CLIP1-212ENST00000540304 DSCR10P59022 87 aa5.79□□□□□ -1.48
CLIP1-212ENST00000540304 CSAG1Q6PB30 78 aa5.78□□□□□ -1.48
CLIP1-212ENST00000540304 K7EQZ3 153 aa5.76□□□□□ -1.49
CLIP1-212ENST00000540304 NDUFB1O75438 58 aa5.76□□□□□ -1.49
CLIP1-212ENST00000540304 KMT2CQ8NEZ4 4911 aaKnown RBP5.76□□□□□ -1.49
CLIP1-212ENST00000540304 VPS13BQ7Z7G8 4022 aa5.75□□□□□ -1.49
CLIP1-212ENST00000540304 LINC00472Q9H8W2 130 aa5.74□□□□□ -1.49
CLIP1-212ENST00000540304 SPAG11AQ6PDA7 123 aa5.74□□□□□ -1.49
CLIP1-212ENST00000540304 LINC01558Q9Y6Z2 57 aa5.74□□□□□ -1.49
CLIP1-212ENST00000540304 COA5Q86WW8 74 aa5.73□□□□□ -1.49
CLIP1-212ENST00000540304 ROMO1P60602 79 aa5.72□□□□□ -1.49
CLIP1-212ENST00000540304 RYR2Q92736 4967 aa5.71□□□□□ -1.49
CLIP1-212ENST00000540304 DYNC1H1Q14204 4646 aaKnown RBP5.71□□□□□ -1.49
CLIP1-212ENST00000540304 ASB16-AS1Q495Z4 193 aa5.71□□□□□ -1.5
CLIP1-212ENST00000540304 A8MWP4 228 aa5.7□□□□□ -1.5
CLIP1-212ENST00000540304 SPANXA2-OT1Q8N9U9 137 aa5.7□□□□□ -1.5
CLIP1-212ENST00000540304 A0A1B0GVY2 172 aa5.69□□□□□ -1.5
CLIP1-212ENST00000540304 Q96NJ1 140 aa5.69□□□□□ -1.5
CLIP1-212ENST00000540304 SSBP3-AS1Q7Z2R9 100 aa5.68□□□□□ -1.5
CLIP1-212ENST00000540304 WFDC13Q8IUB5 93 aa5.67□□□□□ -1.5
CLIP1-212ENST00000540304 FAT1Q14517 4588 aa5.67□□□□□ -1.5
CLIP1-212ENST00000540304 A0A087X002 238 aa5.66□□□□□ -1.5
CLIP1-212ENST00000540304 KRTAP29-1A8MX34 341 aaPredicted RBP5.65□□□□□ -1.51
CLIP1-212ENST00000540304 KRTAP1-4P0C5Y4 121 aa5.64□□□□□ -1.51
CLIP1-212ENST00000540304 P0C880 135 aa5.64□□□□□ -1.51
CLIP1-212ENST00000540304 KRTAP13-2Q52LG2 175 aa5.64□□□□□ -1.51
CLIP1-212ENST00000540304 APOBP04114 4563 aaKnown RBP5.64□□□□□ -1.51
CLIP1-212ENST00000540304 XP32Q5T750 250 aa5.62□□□□□ -1.51
CLIP1-212ENST00000540304 MMP24-AS1A0A0U1RRL7 71 aa5.62□□□□□ -1.51
CLIP1-212ENST00000540304 CDK2AP2O75956 126 aa5.62□□□□□ -1.51
CLIP1-212ENST00000540304 SPINK6Q6UWN8 80 aa5.61□□□□□ -1.51
CLIP1-212ENST00000540304 A0A1B0GVX0 72 aa5.61□□□□□ -1.51
CLIP1-212ENST00000540304 MIR22HGQ0VDD5 57 aa5.61□□□□□ -1.51
CLIP1-212ENST00000540304 RYR3Q15413 4870 aa5.61□□□□□ -1.51
CLIP1-212ENST00000540304 H0Y9P7 68 aa5.6□□□□□ -1.51
CLIP1-212ENST00000540304 SMR3BP02814 79 aaPredicted RBP5.6□□□□□ -1.51
CLIP1-212ENST00000540304 C8orf17Q9NRJ1 99 aa5.6□□□□□ -1.51
CLIP1-212ENST00000540304 TYMSOSQ8TAI1 123 aa5.57□□□□□ -1.52
CLIP1-212ENST00000540304 IGLV7-46A0A075B6I9 117 aa5.55□□□□□ -1.52
CLIP1-212ENST00000540304 NOTCH2NLQ7Z3S9 236 aa5.55□□□□□ -1.52
CLIP1-212ENST00000540304 KRTAP4-8Q9BYQ9 185 aa5.55□□□□□ -1.52
CLIP1-212ENST00000540304 KRTAP10-4P60372 401 aaPredicted RBP5.54□□□□□ -1.52
CLIP1-212ENST00000540304 MRPL34Q9BQ48 92 aaKnown RBP5.53□□□□□ -1.52
CLIP1-212ENST00000540304 TP53AIP1Q9HCN2 124 aa5.53□□□□□ -1.52
CLIP1-212ENST00000540304 KRTAP16-1A8MUX0 517 aa5.52□□□□□ -1.53
CLIP1-212ENST00000540304 SPINK1P00995 79 aa5.52□□□□□ -1.53
CLIP1-212ENST00000540304 H3BPC8 53 aa5.52□□□□□ -1.53
CLIP1-212ENST00000540304 PCOTHQ58A44 107 aa5.5□□□□□ -1.53
CLIP1-212ENST00000540304 LINC00304Q8N9R0 145 aa5.5□□□□□ -1.53
CLIP1-212ENST00000540304 HRES1P13985 223 aa5.49□□□□□ -1.53
CLIP1-212ENST00000540304 SPATA8Q6RVD6 105 aa5.49□□□□□ -1.53
CLIP1-212ENST00000540304 RPS29P62273 56 aaKnown RBP5.49□□□□□ -1.53
CLIP1-212ENST00000540304 KRTAP25-1Q3LHN0 102 aa5.48□□□□□ -1.53
CLIP1-212ENST00000540304 PKHD1L1Q86WI1 4243 aa5.47□□□□□ -1.53
CLIP1-212ENST00000540304 HSPG2P98160 4391 aa5.46□□□□□ -1.54
CLIP1-212ENST00000540304 LRP1Q07954 4544 aaKnown RBP5.46□□□□□ -1.54
CLIP1-212ENST00000540304 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.45□□□□□ -1.54
CLIP1-212ENST00000540304 KRTAP9-2Q9BYQ4 174 aa5.45□□□□□ -1.54
CLIP1-212ENST00000540304 NDUFAF8A1L188 74 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms