RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LINC00483Q53H64 154 aa6.71□□□□□ -1.34
SYNE1-237ENST00000539504 DNAH9Q9NYC9 4486 aa6.7□□□□□ -1.34
SYNE1-237ENST00000539504 RETNLBQ9BQ08 111 aa6.69□□□□□ -1.34
SYNE1-237ENST00000539504 Q6ZRN7 208 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-237ENST00000539504 DNAH3Q8TD57 4116 aa6.69□□□□□ -1.34
SYNE1-237ENST00000539504 ZNF861PO60384 105 aa6.69□□□□□ -1.34
SYNE1-237ENST00000539504 IGLV5-52A0A0A0MRZ9 124 aa6.68□□□□□ -1.34
SYNE1-237ENST00000539504 Q5W150 140 aa6.68□□□□□ -1.34
SYNE1-237ENST00000539504 RBM12B-AS1Q9P1G2 102 aa6.68□□□□□ -1.34
SYNE1-237ENST00000539504 A6NN06 94 aa6.68□□□□□ -1.34
SYNE1-237ENST00000539504 RTL8CO15255 209 aa6.68□□□□□ -1.34
SYNE1-237ENST00000539504 A0A087WTM6 91 aa6.68□□□□□ -1.34
SYNE1-237ENST00000539504 NUPR2A6NF83 97 aa6.66□□□□□ -1.34
SYNE1-237ENST00000539504 ACYP2P14621 99 aa6.65□□□□□ -1.34
SYNE1-237ENST00000539504 PLAC8Q9NZF1 115 aa6.65□□□□□ -1.34
SYNE1-237ENST00000539504 C7orf65Q6ZTY9 151 aa6.64□□□□□ -1.35
SYNE1-237ENST00000539504 IGLV7-43P04211 117 aa6.59□□□□□ -1.36
SYNE1-237ENST00000539504 LINC00313P59037 77 aa6.58□□□□□ -1.36
SYNE1-237ENST00000539504 A0A1B0GU69 56 aa6.58□□□□□ -1.36
SYNE1-237ENST00000539504 C8orf87E5RJ46 101 aa6.57□□□□□ -1.36
SYNE1-237ENST00000539504 PLECQ15149 4684 aaKnown RBP6.56□□□□□ -1.36
SYNE1-237ENST00000539504 DNAH7Q8WXX0 4024 aa6.56□□□□□ -1.36
SYNE1-237ENST00000539504 FAM229AH3BQW9 127 aa6.55□□□□□ -1.36
SYNE1-237ENST00000539504 KRTAP13-3Q3SY46 172 aa6.55□□□□□ -1.36
SYNE1-237ENST00000539504 SSBP3-AS1Q7Z2R9 100 aa6.54□□□□□ -1.36
SYNE1-237ENST00000539504 DMAC1Q96GE9 116 aa6.54□□□□□ -1.36
SYNE1-237ENST00000539504 IGKV2D-30A0A075B6S6 120 aa6.53□□□□□ -1.36
SYNE1-237ENST00000539504 IGKV2-30P06310 120 aa6.53□□□□□ -1.36
SYNE1-237ENST00000539504 PRAC1Q96KF2 57 aa6.53□□□□□ -1.36
SYNE1-237ENST00000539504 C1orf134Q5TEV5 83 aa6.52□□□□□ -1.37
SYNE1-237ENST00000539504 TGP01266 2768 aa6.51□□□□□ -1.37
SYNE1-237ENST00000539504 DNAH8Q96JB1 4490 aa6.49□□□□□ -1.37
SYNE1-237ENST00000539504 FRAS1Q86XX4 4008 aa6.49□□□□□ -1.37
SYNE1-237ENST00000539504 LY6G6CO95867 125 aa6.47□□□□□ -1.37
SYNE1-237ENST00000539504 ADM2Q7Z4H4 148 aa6.47□□□□□ -1.37
SYNE1-237ENST00000539504 MIR22HGQ0VDD5 57 aa6.46□□□□□ -1.37
SYNE1-237ENST00000539504 SPINK1P00995 79 aa6.46□□□□□ -1.38
SYNE1-237ENST00000539504 UQCR11O14957 56 aa6.45□□□□□ -1.38
SYNE1-237ENST00000539504 FBN3Q75N90 2809 aa6.44□□□□□ -1.38
SYNE1-237ENST00000539504 MEGF8Q7Z7M0 2845 aa6.43□□□□□ -1.38
SYNE1-237ENST00000539504 KRTAP13-2Q52LG2 175 aa6.42□□□□□ -1.38
SYNE1-237ENST00000539504 C4orf48Q5BLP8 95 aa6.42□□□□□ -1.38
SYNE1-237ENST00000539504 SPATA8Q6RVD6 105 aa6.42□□□□□ -1.38
SYNE1-237ENST00000539504 DYNC2H1Q8NCM8 4307 aaKnown RBP6.42□□□□□ -1.38
SYNE1-237ENST00000539504 STARD9Q9P2P6 4700 aa6.4□□□□□ -1.38
SYNE1-237ENST00000539504 KRTAP10-2P60368 255 aa6.4□□□□□ -1.39
SYNE1-237ENST00000539504 VPS13DQ5THJ4 4388 aa6.39□□□□□ -1.39
SYNE1-237ENST00000539504 HECTD4Q9Y4D8 3996 aa6.39□□□□□ -1.39
SYNE1-237ENST00000539504 Q8N1X5 172 aa6.38□□□□□ -1.39
SYNE1-237ENST00000539504 DNAH17Q9UFH2 4485 aa6.38□□□□□ -1.39
SYNE1-237ENST00000539504 PLA2G1BP04054 148 aaKnown RBP6.37□□□□□ -1.39
SYNE1-237ENST00000539504 KRTAP16-1A8MUX0 517 aa6.36□□□□□ -1.39
SYNE1-237ENST00000539504 KMT2AQ03164 3969 aa6.36□□□□□ -1.39
SYNE1-237ENST00000539504 ALMS1Q8TCU4 4167 aa6.34□□□□□ -1.4
SYNE1-237ENST00000539504 TYMSOSQ8TAI1 123 aa6.33□□□□□ -1.4
SYNE1-237ENST00000539504 DNAH2Q9P225 4427 aa6.32□□□□□ -1.4
SYNE1-237ENST00000539504 LINC01554Q52M75 96 aa6.32□□□□□ -1.4
SYNE1-237ENST00000539504 KRTAP10-1P60331 282 aa6.31□□□□□ -1.4
SYNE1-237ENST00000539504 CSAG1Q6PB30 78 aa6.29□□□□□ -1.4
SYNE1-237ENST00000539504 KRTAP1-4P0C5Y4 121 aa6.28□□□□□ -1.4
SYNE1-237ENST00000539504 DNAH11Q96DT5 4516 aa6.26□□□□□ -1.41
SYNE1-237ENST00000539504 PRKDCP78527 4128 aaKnown RBP6.25□□□□□ -1.41
SYNE1-237ENST00000539504 DNAH6Q9C0G6 4158 aa6.24□□□□□ -1.41
SYNE1-237ENST00000539504 C9orf92A6NGG3 77 aa6.22□□□□□ -1.41
SYNE1-237ENST00000539504 Q6ZSA8 131 aa6.21□□□□□ -1.42
SYNE1-237ENST00000539504 LINC00304Q8N9R0 145 aa6.21□□□□□ -1.42
SYNE1-237ENST00000539504 LRP1BQ9NZR2 4599 aa6.2□□□□□ -1.42
SYNE1-237ENST00000539504 DNAH5Q8TE73 4624 aa6.18□□□□□ -1.42
SYNE1-237ENST00000539504 A0A1B0GU33 70 aa6.16□□□□□ -1.42
SYNE1-237ENST00000539504 H0YAA0 97 aa6.14□□□□□ -1.43
SYNE1-237ENST00000539504 FLG2Q5D862 2391 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-237ENST00000539504 SMR3BP02814 79 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-237ENST00000539504 A8MUU9 505 aa6.09□□□□□ -1.43
SYNE1-237ENST00000539504 VPS13BQ7Z7G8 4022 aa6.09□□□□□ -1.44
SYNE1-237ENST00000539504 H1FX-AS1Q4G0G2 97 aa6.09□□□□□ -1.44
SYNE1-237ENST00000539504 K7ERS5 55 aa6.07□□□□□ -1.44
SYNE1-237ENST00000539504 CRIPTQ9P021 101 aa6.06□□□□□ -1.44
SYNE1-237ENST00000539504 KRTAP3-1Q9BYR8 98 aa6.06□□□□□ -1.44
SYNE1-237ENST00000539504 H3BS24 57 aa6.05□□□□□ -1.44
SYNE1-237ENST00000539504 RPS29P62273 56 aaKnown RBP6.04□□□□□ -1.44
SYNE1-237ENST00000539504 KRTAP25-1Q3LHN0 102 aa6.04□□□□□ -1.44
SYNE1-237ENST00000539504 C20orf166-AS1Q96NR2 134 aa6.04□□□□□ -1.44
SYNE1-237ENST00000539504 DMBT1Q9UGM3 2413 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-237ENST00000539504 HYDINQ4G0P3 5121 aa5.99□□□□□ -1.45
SYNE1-237ENST00000539504 DNHD1Q96M86 4753 aa5.98□□□□□ -1.45
SYNE1-237ENST00000539504 COX6B2Q6YFQ2 88 aa5.98□□□□□ -1.45
SYNE1-237ENST00000539504 PKD1P98161 4303 aa5.97□□□□□ -1.45
SYNE1-237ENST00000539504 FAT2Q9NYQ8 4349 aa5.95□□□□□ -1.46
SYNE1-237ENST00000539504 A0A0D9SG42 100 aa5.95□□□□□ -1.46
SYNE1-237ENST00000539504 ROMO1P60602 79 aa5.92□□□□□ -1.46
SYNE1-237ENST00000539504 FAT1Q14517 4588 aa5.89□□□□□ -1.47
SYNE1-237ENST00000539504 PKHD1P08F94 4074 aa5.87□□□□□ -1.47
SYNE1-237ENST00000539504 RPL37P61927 97 aaKnown RBP5.87□□□□□ -1.47
SYNE1-237ENST00000539504 SACSQ9NZJ4 4579 aa5.87□□□□□ -1.47
SYNE1-237ENST00000539504 DYNC1H1Q14204 4646 aaKnown RBP5.83□□□□□ -1.48
SYNE1-237ENST00000539504 SPINT4Q6UDR6 99 aa5.81□□□□□ -1.48
SYNE1-237ENST00000539504 KRTAP13-4Q3LI77 160 aa5.8□□□□□ -1.48
SYNE1-237ENST00000539504 KRTAP10-6P60371 365 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-237ENST00000539504 S4R3F8 94 aa5.8□□□□□ -1.48
SYNE1-237ENST00000539504 KRTAP10-4P60372 401 aaPredicted RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms