RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 CCDC88BA6NC98 1476 aa-0.53□□□□□ -2.49
SMC4-225ENST00000497203 LINC00643Q86TS7 51 aa-0.53□□□□□ -2.49
SMC4-225ENST00000497203 RABAC1Q9UI14 185 aa-0.53□□□□□ -2.49
SMC4-225ENST00000497203 CFAP47Q6ZTR5 3102 aa-0.53□□□□□ -2.49
SMC4-225ENST00000497203 SPTAN1Q13813 2472 aaKnown RBP-0.53□□□□□ -2.49
SMC4-225ENST00000497203 RGPD3A6NKT7 1758 aaPredicted RBP-0.53□□□□□ -2.49
SMC4-225ENST00000497203 AKAP12Q02952 1782 aa-0.53□□□□□ -2.49
SMC4-225ENST00000497203 RGPD4Q7Z3J3 1758 aa-0.53□□□□□ -2.49
SMC4-225ENST00000497203 THOC2Q8NI27 1593 aaKnown RBP-0.53□□□□□ -2.49
SMC4-225ENST00000497203 MAP3K1Q13233 1512 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 DNAH14Q0VDD8 3507 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 PVALEFA0A1B0GWK0 134 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 UMAD1C9J7I0 102 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 IAPPP10997 89 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 PYY3Q5JQD4 70 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 DEFB106AQ8N104 65 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 S100A16Q96FQ6 103 aaKnown RBP-0.54□□□□□ -2.5
SMC4-225ENST00000497203 SNHG12Q9BXW3 62 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 ABCC3O15438 1527 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 NCOA2Q15596 1464 aa-0.54□□□□□ -2.5
SMC4-225ENST00000497203 MKI67P46013 3256 aaKnown RBP-0.55□□□□□ -2.5
SMC4-225ENST00000497203 MAP3K4Q9Y6R4 1608 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 RANBP2P49792 3224 aaKnown RBP-0.55□□□□□ -2.5
SMC4-225ENST00000497203 LCE6AA0A183 80 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 KANTRA0A1W2PQU2 76 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 MRPL33O75394 65 aaKnown RBP-0.55□□□□□ -2.5
SMC4-225ENST00000497203 MT1BP07438 61 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 ATP5EP2Q5VTU8 51 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 V9GYS6 101 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.55□□□□□ -2.5
SMC4-225ENST00000497203 SCN11AQ9UI33 1791 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 WDFY3Q8IZQ1 3526 aa-0.55□□□□□ -2.5
SMC4-225ENST00000497203 WIZO95785 1651 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 KIF14Q15058 1648 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 SZT2Q5T011 3432 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 DNAH12Q6ZR08 3092 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 MUC3AQ02505 3323 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 LYNX1G3V0Z9 82 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 NDUFA4O00483 81 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 MT1HL1P0DM35 61 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 UBR1Q8IWV7 1749 aa-0.56□□□□□ -2.5
SMC4-225ENST00000497203 CEP290O15078 2479 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 PCNTO95613 3336 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 DOT1LQ8TEK3 1739 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 A0A087WXM4 84 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 H0YAA0 97 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 DEFB130BP0DP73 79 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 DEFB130AP0DP74 79 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 HFM1A2PYH4 1435 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 PIK3C2BO00750 1634 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 VPS13CQ709C8 3753 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 DIP2BQ9P265 1576 aa-0.57□□□□□ -2.5
SMC4-225ENST00000497203 DDX60LQ5H9U9 1706 aaKnown RBP-0.58□□□□□ -2.5
SMC4-225ENST00000497203 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.58□□□□□ -2.5
SMC4-225ENST00000497203 USP34Q70CQ2 3546 aa-0.58□□□□□ -2.5
SMC4-225ENST00000497203 MT1GP13640 62 aa-0.58□□□□□ -2.5
SMC4-225ENST00000497203 HMGA1P17096 107 aaKnown RBP-0.58□□□□□ -2.5
SMC4-225ENST00000497203 MT1XP80297 61 aa-0.58□□□□□ -2.5
SMC4-225ENST00000497203 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.58□□□□□ -2.5
SMC4-225ENST00000497203 TMEM131LA2VDJ0 1609 aa-0.58□□□□□ -2.5
SMC4-225ENST00000497203 DEFB1P60022 68 aa-0.59□□□□□ -2.5
SMC4-225ENST00000497203 MT1HP80294 61 aa-0.59□□□□□ -2.5
SMC4-225ENST00000497203 NREPQ16612 68 aa-0.59□□□□□ -2.5
SMC4-225ENST00000497203 MT1MQ8N339 61 aa-0.59□□□□□ -2.5
SMC4-225ENST00000497203 UACAQ9BZF9 1416 aa-0.59□□□□□ -2.5
SMC4-225ENST00000497203 KIAA0586Q9BVV6 1533 aa-0.59□□□□□ -2.5
SMC4-225ENST00000497203 ARFGEF2Q9Y6D5 1785 aa-0.6□□□□□ -2.5
SMC4-225ENST00000497203 UBL5Q9BZL1 73 aa-0.6□□□□□ -2.51
SMC4-225ENST00000497203 TTC37Q6PGP7 1564 aa-0.61□□□□□ -2.51
SMC4-225ENST00000497203 CFAP43Q8NDM7 1665 aa-0.61□□□□□ -2.51
SMC4-225ENST00000497203 DEFB131BA0A096LNP1 70 aa-0.61□□□□□ -2.51
SMC4-225ENST00000497203 MT2AP02795 61 aa-0.61□□□□□ -2.51
SMC4-225ENST00000497203 RALGAPBQ86X10 1494 aa-0.61□□□□□ -2.51
SMC4-225ENST00000497203 ASPMQ8IZT6 3477 aa-0.62□□□□□ -2.51
SMC4-225ENST00000497203 PLCH1Q4KWH8 1693 aa-0.62□□□□□ -2.51
SMC4-225ENST00000497203 ZNF831Q5JPB2 1677 aa-0.62□□□□□ -2.51
SMC4-225ENST00000497203 KDM5DQ9BY66 1539 aa-0.62□□□□□ -2.51
SMC4-225ENST00000497203 ITSN1Q15811 1721 aa-0.62□□□□□ -2.51
SMC4-225ENST00000497203 CENPFP49454 3210 aa-0.62□□□□□ -2.51
SMC4-225ENST00000497203 ADIRFQ15847 76 aa-0.63□□□□□ -2.51
SMC4-225ENST00000497203 CLPSL2Q6UWE3 100 aa-0.63□□□□□ -2.51
SMC4-225ENST00000497203 ANKRD36CQ5JPF3 1778 aa-0.63□□□□□ -2.51
SMC4-225ENST00000497203 CDH23Q9H251 3354 aa-0.63□□□□□ -2.51
SMC4-225ENST00000497203 BRCA2P51587 3418 aa-0.64□□□□□ -2.51
SMC4-225ENST00000497203 PPLO60437 1756 aa-0.64□□□□□ -2.51
SMC4-225ENST00000497203 SMR3BP02814 79 aaPredicted RBP-0.64□□□□□ -2.51
SMC4-225ENST00000497203 SMIM13P0DJ93 91 aa-0.64□□□□□ -2.51
SMC4-225ENST00000497203 BVES-AS1Q5T3Y7 98 aa-0.64□□□□□ -2.51
SMC4-225ENST00000497203 KRTAP8-1Q8IUC2 63 aa-0.64□□□□□ -2.51
SMC4-225ENST00000497203 RICTORQ6R327 1708 aa-0.64□□□□□ -2.51
SMC4-225ENST00000497203 PARP4Q9UKK3 1724 aaKnown RBP-0.64□□□□□ -2.51
SMC4-225ENST00000497203 ARHGAP35Q9NRY4 1499 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 MMP24-AS1A0A0U1RRL7 71 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 MT1EP04732 61 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 MT1FP04733 61 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 TNP1P09430 55 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 WT1-ASQ06250 92 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 MINOS1Q5TGZ0 78 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 MT1LQ93083 61 aa-0.65□□□□□ -2.51
SMC4-225ENST00000497203 S100A13Q99584 98 aa-0.65□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms