RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 NOTCH2NLQ7Z3S9 236 aa7.69□□□□□ -1.18
VEGFA-215ENST00000497139 NOTCH1P46531 2555 aa7.68□□□□□ -1.18
VEGFA-215ENST00000497139 WWC2-AS2Q96NR7 200 aa7.65□□□□□ -1.18
VEGFA-215ENST00000497139 FAM229AH3BQW9 127 aa7.64□□□□□ -1.19
VEGFA-215ENST00000497139 ZNF861PO60384 105 aa7.62□□□□□ -1.19
VEGFA-215ENST00000497139 MGAM2Q2M2H8 2515 aa7.61□□□□□ -1.19
VEGFA-215ENST00000497139 SRRM2Q9UQ35 2752 aaKnown RBP7.61□□□□□ -1.19
VEGFA-215ENST00000497139 CMYA5Q8N3K9 4069 aa7.6□□□□□ -1.19
VEGFA-215ENST00000497139 IGKV2-30P06310 120 aa7.6□□□□□ -1.19
VEGFA-215ENST00000497139 KRTAP1-5Q9BYS1 174 aa7.6□□□□□ -1.19
VEGFA-215ENST00000497139 NBEAL1Q6ZS30 2694 aa7.59□□□□□ -1.19
VEGFA-215ENST00000497139 DNAH3Q8TD57 4116 aa7.59□□□□□ -1.19
VEGFA-215ENST00000497139 TENM3Q9P273 2699 aa7.58□□□□□ -1.2
VEGFA-215ENST00000497139 IGLV7-43P04211 117 aa7.58□□□□□ -1.2
VEGFA-215ENST00000497139 ANK2Q01484 3957 aa7.58□□□□□ -1.2
VEGFA-215ENST00000497139 SPINK6Q6UWN8 80 aa7.53□□□□□ -1.2
VEGFA-215ENST00000497139 SPACA4Q8TDM5 124 aa7.53□□□□□ -1.2
VEGFA-215ENST00000497139 C1orf134Q5TEV5 83 aa7.52□□□□□ -1.21
VEGFA-215ENST00000497139 PANO1I0J062 215 aa7.5□□□□□ -1.21
VEGFA-215ENST00000497139 KRTAP25-1Q3LHN0 102 aa7.49□□□□□ -1.21
VEGFA-215ENST00000497139 IGLV5-52A0A0A0MRZ9 124 aa7.48□□□□□ -1.21
VEGFA-215ENST00000497139 UBE2DNLQ8IWF7 75 aa7.47□□□□□ -1.21
VEGFA-215ENST00000497139 IGKV2D-30A0A075B6S6 120 aa7.47□□□□□ -1.21
VEGFA-215ENST00000497139 ROMO1P60602 79 aa7.47□□□□□ -1.21
VEGFA-215ENST00000497139 A8MUU9 505 aa7.46□□□□□ -1.22
VEGFA-215ENST00000497139 LY6G6CO95867 125 aa7.45□□□□□ -1.22
VEGFA-215ENST00000497139 PSORS1C2Q9UIG4 136 aa7.45□□□□□ -1.22
VEGFA-215ENST00000497139 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.44□□□□□ -1.22
VEGFA-215ENST00000497139 HUWE1Q7Z6Z7 4374 aaKnown RBP7.44□□□□□ -1.22
VEGFA-215ENST00000497139 SSBP3-AS1Q7Z2R9 100 aa7.44□□□□□ -1.22
VEGFA-215ENST00000497139 DNAH10Q8IVF4 4471 aa7.43□□□□□ -1.22
VEGFA-215ENST00000497139 ANAPC11Q9NYG5 84 aa7.42□□□□□ -1.22
VEGFA-215ENST00000497139 LYSTQ99698 3801 aa7.41□□□□□ -1.22
VEGFA-215ENST00000497139 CIRBP-AS1Q8TBR5 109 aa7.4□□□□□ -1.23
VEGFA-215ENST00000497139 APLNQ9ULZ1 77 aa7.39□□□□□ -1.23
VEGFA-215ENST00000497139 KRTAP16-1A8MUX0 517 aa7.38□□□□□ -1.23
VEGFA-215ENST00000497139 Q6ZRN7 208 aaPredicted RBP7.38□□□□□ -1.23
VEGFA-215ENST00000497139 LINC00304Q8N9R0 145 aa7.37□□□□□ -1.23
VEGFA-215ENST00000497139 CSMD3Q7Z407 3707 aa7.36□□□□□ -1.23
VEGFA-215ENST00000497139 NBDYA0A0U1RRE5 68 aa7.36□□□□□ -1.23
VEGFA-215ENST00000497139 H0YAA0 97 aa7.35□□□□□ -1.23
VEGFA-215ENST00000497139 STAB2Q8WWQ8 2551 aa7.34□□□□□ -1.23
VEGFA-215ENST00000497139 Q6ZSA8 131 aa7.34□□□□□ -1.23
VEGFA-215ENST00000497139 DNHD1Q96M86 4753 aa7.34□□□□□ -1.24
VEGFA-215ENST00000497139 DNAH9Q9NYC9 4486 aa7.33□□□□□ -1.24
VEGFA-215ENST00000497139 COL7A1Q02388 2944 aa7.31□□□□□ -1.24
VEGFA-215ENST00000497139 A0A087WTM6 91 aa7.26□□□□□ -1.25
VEGFA-215ENST00000497139 A0A1B0GU33 70 aa7.26□□□□□ -1.25
VEGFA-215ENST00000497139 SPINK1P00995 79 aa7.26□□□□□ -1.25
VEGFA-215ENST00000497139 DNAH8Q96JB1 4490 aa7.26□□□□□ -1.25
VEGFA-215ENST00000497139 DYNC2H1Q8NCM8 4307 aaKnown RBP7.26□□□□□ -1.25
VEGFA-215ENST00000497139 K7ERS5 55 aa7.24□□□□□ -1.25
VEGFA-215ENST00000497139 NUPR2A6NF83 97 aa7.24□□□□□ -1.25
VEGFA-215ENST00000497139 MEGF8Q7Z7M0 2845 aa7.23□□□□□ -1.25
VEGFA-215ENST00000497139 H1FX-AS1Q4G0G2 97 aa7.23□□□□□ -1.25
VEGFA-215ENST00000497139 PRKDCP78527 4128 aaKnown RBP7.21□□□□□ -1.26
VEGFA-215ENST00000497139 P0C880 135 aa7.2□□□□□ -1.26
VEGFA-215ENST00000497139 Q8N1X5 172 aa7.19□□□□□ -1.26
VEGFA-215ENST00000497139 FRAS1Q86XX4 4008 aa7.17□□□□□ -1.26
VEGFA-215ENST00000497139 TYMSOSQ8TAI1 123 aa7.17□□□□□ -1.26
VEGFA-215ENST00000497139 TGP01266 2768 aa7.16□□□□□ -1.26
VEGFA-215ENST00000497139 KRTAP13-2Q52LG2 175 aa7.14□□□□□ -1.27
VEGFA-215ENST00000497139 FBN3Q75N90 2809 aa7.12□□□□□ -1.27
VEGFA-215ENST00000497139 DNAH7Q8WXX0 4024 aa7.12□□□□□ -1.27
VEGFA-215ENST00000497139 PLECQ15149 4684 aaKnown RBP7.12□□□□□ -1.27
VEGFA-215ENST00000497139 HECTD4Q9Y4D8 3996 aa7.11□□□□□ -1.27
VEGFA-215ENST00000497139 KRTAP21-3Q3LHN1 58 aa7.1□□□□□ -1.27
VEGFA-215ENST00000497139 J3QL48 77 aa7.09□□□□□ -1.27
VEGFA-215ENST00000497139 VPS13DQ5THJ4 4388 aa7.07□□□□□ -1.28
VEGFA-215ENST00000497139 DNAH17Q9UFH2 4485 aa7.04□□□□□ -1.28
VEGFA-215ENST00000497139 STARD9Q9P2P6 4700 aa7.03□□□□□ -1.28
VEGFA-215ENST00000497139 CRIPTQ9P021 101 aa7.03□□□□□ -1.28
VEGFA-215ENST00000497139 COX6B2Q6YFQ2 88 aa7.02□□□□□ -1.29
VEGFA-215ENST00000497139 A0A0A0MQY5 61 aa7.02□□□□□ -1.29
VEGFA-215ENST00000497139 SPINT4Q6UDR6 99 aa7.01□□□□□ -1.29
VEGFA-215ENST00000497139 KRTAP3-1Q9BYR8 98 aa6.99□□□□□ -1.29
VEGFA-215ENST00000497139 RPS29P62273 56 aaKnown RBP6.99□□□□□ -1.29
VEGFA-215ENST00000497139 KRTAP1-4P0C5Y4 121 aa6.98□□□□□ -1.29
VEGFA-215ENST00000497139 RPL37P61927 97 aaKnown RBP6.98□□□□□ -1.29
VEGFA-215ENST00000497139 C20orf166-AS1Q96NR2 134 aa6.95□□□□□ -1.3
VEGFA-215ENST00000497139 KRTAP15-1Q3LI76 137 aa6.94□□□□□ -1.3
VEGFA-215ENST00000497139 TPRXLQ17RH7 258 aa6.93□□□□□ -1.3
VEGFA-215ENST00000497139 KMT2AQ03164 3969 aa6.91□□□□□ -1.3
VEGFA-215ENST00000497139 DNAH2Q9P225 4427 aa6.9□□□□□ -1.3
VEGFA-215ENST00000497139 FLG2Q5D862 2391 aaPredicted RBP6.89□□□□□ -1.31
VEGFA-215ENST00000497139 NDUFAF8A1L188 74 aa6.89□□□□□ -1.31
VEGFA-215ENST00000497139 DNAH6Q9C0G6 4158 aa6.86□□□□□ -1.31
VEGFA-215ENST00000497139 KRTAP10-2P60368 255 aa6.82□□□□□ -1.32
VEGFA-215ENST00000497139 DNAH11Q96DT5 4516 aa6.82□□□□□ -1.32
VEGFA-215ENST00000497139 KRTAP10-6P60371 365 aaPredicted RBP6.81□□□□□ -1.32
VEGFA-215ENST00000497139 KRTAP13-4Q3LI77 160 aa6.76□□□□□ -1.33
VEGFA-215ENST00000497139 DNAH5Q8TE73 4624 aa6.75□□□□□ -1.33
VEGFA-215ENST00000497139 C10orf95Q9H7T3 257 aa6.75□□□□□ -1.33
VEGFA-215ENST00000497139 KRTAP10-1P60331 282 aa6.74□□□□□ -1.33
VEGFA-215ENST00000497139 C9orf92A6NGG3 77 aa6.73□□□□□ -1.33
VEGFA-215ENST00000497139 A0A0D9SG42 100 aa6.73□□□□□ -1.33
VEGFA-215ENST00000497139 KRTAP3-2Q9BYR7 98 aa6.71□□□□□ -1.33
VEGFA-215ENST00000497139 HYDINQ4G0P3 5121 aa6.71□□□□□ -1.33
VEGFA-215ENST00000497139 S4R3F8 94 aa6.71□□□□□ -1.34
VEGFA-215ENST00000497139 KRTAP3-3Q9BYR6 98 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms