RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 LINC00846Q9NV44 126 aa4.07□□□□□ -1.76
SYNE1-229ENST00000490866 ANAPC11Q9NYG5 84 aa4.07□□□□□ -1.76
SYNE1-229ENST00000490866 RYR1P21817 5038 aa4.07□□□□□ -1.76
SYNE1-229ENST00000490866 KRTAP29-1A8MX34 341 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-229ENST00000490866 KRTAP10-8P60410 259 aa4.06□□□□□ -1.76
SYNE1-229ENST00000490866 KRTAP13-2Q52LG2 175 aa4.06□□□□□ -1.76
SYNE1-229ENST00000490866 Q6ZVQ6 151 aa4.06□□□□□ -1.76
SYNE1-229ENST00000490866 PRR26Q8N8Z3 221 aa4.06□□□□□ -1.76
SYNE1-229ENST00000490866 EPPK1P58107 5090 aaKnown RBP4.04□□□□□ -1.76
SYNE1-229ENST00000490866 LINC00472Q9H8W2 130 aa4.04□□□□□ -1.76
SYNE1-229ENST00000490866 KIAA1109Q2LD37 5005 aa4.03□□□□□ -1.76
SYNE1-229ENST00000490866 A8MWP4 228 aa4.02□□□□□ -1.77
SYNE1-229ENST00000490866 HRCT1Q6UXD1 115 aa4.02□□□□□ -1.77
SYNE1-229ENST00000490866 FP248Q71RG6 208 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-229ENST00000490866 HSPG2P98160 4391 aa4.02□□□□□ -1.77
SYNE1-229ENST00000490866 FAT1Q14517 4588 aa4.01□□□□□ -1.77
SYNE1-229ENST00000490866 IGKV4-1P06312 121 aa4.01□□□□□ -1.77
SYNE1-229ENST00000490866 C8orf87E5RJ46 101 aa4□□□□□ -1.77
SYNE1-229ENST00000490866 HIST1H4AP62805 103 aaKnown RBP3.99□□□□□ -1.77
SYNE1-229ENST00000490866 PRR15Q8IV56 129 aa3.99□□□□□ -1.77
SYNE1-229ENST00000490866 SMIM20Q8N5G0 67 aa3.99□□□□□ -1.77
SYNE1-229ENST00000490866 BIRC6Q9NR09 4857 aa3.99□□□□□ -1.77
SYNE1-229ENST00000490866 SCGB1A1P11684 91 aa3.98□□□□□ -1.77
SYNE1-229ENST00000490866 C1orf195Q5TG92 126 aa3.98□□□□□ -1.77
SYNE1-229ENST00000490866 A0A0G2JQZ4 141 aa3.97□□□□□ -1.77
SYNE1-229ENST00000490866 A0A1B0GVX0 72 aa3.97□□□□□ -1.77
SYNE1-229ENST00000490866 DMBT1Q9UGM3 2413 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-229ENST00000490866 DSCR10P59022 87 aa3.96□□□□□ -1.78
SYNE1-229ENST00000490866 LINC00313P59037 77 aa3.96□□□□□ -1.78
SYNE1-229ENST00000490866 Q96NJ1 140 aa3.96□□□□□ -1.78
SYNE1-229ENST00000490866 FLG2Q5D862 2391 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-229ENST00000490866 IGKV3D-7A0A0C4DH55 119 aa3.95□□□□□ -1.78
SYNE1-229ENST00000490866 SVIPQ8NHG7 77 aa3.95□□□□□ -1.78
SYNE1-229ENST00000490866 TP53AIP1Q9HCN2 124 aa3.95□□□□□ -1.78
SYNE1-229ENST00000490866 HCG22E2RYF7 251 aa3.94□□□□□ -1.78
SYNE1-229ENST00000490866 MT1HL1P0DM35 61 aa3.94□□□□□ -1.78
SYNE1-229ENST00000490866 IGHV6-1A0A0B4J1U7 121 aa3.93□□□□□ -1.78
SYNE1-229ENST00000490866 hDV103S1A0JD37 113 aa3.93□□□□□ -1.78
SYNE1-229ENST00000490866 MT-ATP8P03928 68 aa3.93□□□□□ -1.78
SYNE1-229ENST00000490866 PKHD1L1Q86WI1 4243 aa3.93□□□□□ -1.78
SYNE1-229ENST00000490866 K7EQZ3 153 aa3.92□□□□□ -1.78
SYNE1-229ENST00000490866 ATOX1O00244 68 aa3.92□□□□□ -1.78
SYNE1-229ENST00000490866 DEFB116Q30KQ4 102 aa3.92□□□□□ -1.78
SYNE1-229ENST00000490866 CASC2Q6XLA1 102 aa3.92□□□□□ -1.78
SYNE1-229ENST00000490866 TMEM254Q8TBM7 123 aa3.92□□□□□ -1.78
SYNE1-229ENST00000490866 C8orf17Q9NRJ1 99 aa3.91□□□□□ -1.78
SYNE1-229ENST00000490866 HERC2O95714 4834 aa3.9□□□□□ -1.78
SYNE1-229ENST00000490866 IGLV7-46A0A075B6I9 117 aa3.9□□□□□ -1.79
SYNE1-229ENST00000490866 C5orf47Q569G3 176 aa3.9□□□□□ -1.79
SYNE1-229ENST00000490866 MRPL34Q9BQ48 92 aaKnown RBP3.9□□□□□ -1.79
SYNE1-229ENST00000490866 H3BPC8 53 aa3.88□□□□□ -1.79
SYNE1-229ENST00000490866 UQCRQO14949 82 aa3.88□□□□□ -1.79
SYNE1-229ENST00000490866 TPRXLQ17RH7 258 aa3.88□□□□□ -1.79
SYNE1-229ENST00000490866 Q8N9P0 234 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-229ENST00000490866 MYCBP2O75592 4640 aa3.87□□□□□ -1.79
SYNE1-229ENST00000490866 TRAV7A0A075B6U4 112 aa3.87□□□□□ -1.79
SYNE1-229ENST00000490866 MMP24-AS1A0A0U1RRL7 71 aa3.87□□□□□ -1.79
SYNE1-229ENST00000490866 FAM236AA0A1B0GUQ0 79 aa3.87□□□□□ -1.79
SYNE1-229ENST00000490866 FAM236BA0A1B0GV22 79 aa3.87□□□□□ -1.79
SYNE1-229ENST00000490866 PRR4Q16378 134 aa3.87□□□□□ -1.79
SYNE1-229ENST00000490866 LRP1Q07954 4544 aaKnown RBP3.86□□□□□ -1.79
SYNE1-229ENST00000490866 MP68P56378 58 aa3.86□□□□□ -1.79
SYNE1-229ENST00000490866 Q8N9L7 120 aa3.86□□□□□ -1.79
SYNE1-229ENST00000490866 TNXBP22105 4242 aa3.86□□□□□ -1.79
SYNE1-229ENST00000490866 FAT3Q8TDW7 4589 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 A0A087WVE0 104 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 NDUFS5O43920 106 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 ATP11AUNQ6ZP68 121 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 Q75L30 129 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 WFDC13Q8IUB5 93 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 SERP2Q8N6R1 65 aa3.85□□□□□ -1.79
SYNE1-229ENST00000490866 C20orf166-AS1Q96NR2 134 aa3.84□□□□□ -1.79
SYNE1-229ENST00000490866 ANAPC13Q9BS18 74 aa3.84□□□□□ -1.79
SYNE1-229ENST00000490866 KRTAP13-3Q3SY46 172 aa3.83□□□□□ -1.8
SYNE1-229ENST00000490866 RETNLBQ9BQ08 111 aa3.83□□□□□ -1.8
SYNE1-229ENST00000490866 ABCA13Q86UQ4 5058 aa3.82□□□□□ -1.8
SYNE1-229ENST00000490866 A8MUU9 505 aa3.82□□□□□ -1.8
SYNE1-229ENST00000490866 NDUFC1O43677 76 aa3.82□□□□□ -1.8
SYNE1-229ENST00000490866 OCR1Q9BZK8 76 aa3.82□□□□□ -1.8
SYNE1-229ENST00000490866 TRAV22A0A0B4J277 110 aa3.81□□□□□ -1.8
SYNE1-229ENST00000490866 KRTAP16-1A8MUX0 517 aa3.81□□□□□ -1.8
SYNE1-229ENST00000490866 COX7CP15954 63 aa3.81□□□□□ -1.8
SYNE1-229ENST00000490866 SEC61BP60468 96 aaKnown RBP3.81□□□□□ -1.8
SYNE1-229ENST00000490866 LOC101927531A0A1B0GV80 90 aa3.8□□□□□ -1.8
SYNE1-229ENST00000490866 PCLOQ9Y6V0 5065 aa3.79□□□□□ -1.8
SYNE1-229ENST00000490866 C9orf92A6NGG3 77 aa3.79□□□□□ -1.8
SYNE1-229ENST00000490866 NOTCH2NLQ7Z3S9 236 aa3.79□□□□□ -1.8
SYNE1-229ENST00000490866 ZCCHC13Q8WW36 166 aaKnown RBP3.79□□□□□ -1.8
SYNE1-229ENST00000490866 RPL37P61927 97 aaKnown RBP3.78□□□□□ -1.8
SYNE1-229ENST00000490866 H0Y9P7 68 aa3.76□□□□□ -1.81
SYNE1-229ENST00000490866 KLKP1Q107X0 134 aa3.76□□□□□ -1.81
SYNE1-229ENST00000490866 C1orf64Q8NEQ6 169 aa3.76□□□□□ -1.81
SYNE1-229ENST00000490866 IGKV2-30P06310 120 aa3.75□□□□□ -1.81
SYNE1-229ENST00000490866 PCP4P48539 62 aa3.74□□□□□ -1.81
SYNE1-229ENST00000490866 C7orf65Q6ZTY9 151 aa3.74□□□□□ -1.81
SYNE1-229ENST00000490866 LINC00208Q96KT6 92 aa3.73□□□□□ -1.81
SYNE1-229ENST00000490866 A0A0U1RQV1 116 aa3.72□□□□□ -1.81
SYNE1-229ENST00000490866 LCE1AQ5T7P2 110 aa3.72□□□□□ -1.81
SYNE1-229ENST00000490866 C20orf197Q8N268 126 aa3.72□□□□□ -1.81
SYNE1-229ENST00000490866 CYP4F30PQ9H0H9 118 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms