RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 Q75L30 129 aa3.75□□□□□ -1.81
COL9A1-209ENST00000489861 CEND1Q8N111 149 aa3.75□□□□□ -1.81
COL9A1-209ENST00000489861 C14orf144Q96I85 54 aa3.75□□□□□ -1.81
COL9A1-209ENST00000489861 NDUFV3P56181 108 aaKnown RBP3.74□□□□□ -1.81
COL9A1-209ENST00000489861 A0A0G2JQZ4 141 aa3.73□□□□□ -1.81
COL9A1-209ENST00000489861 FABP2P12104 132 aa3.73□□□□□ -1.81
COL9A1-209ENST00000489861 H3BMG7 143 aa3.72□□□□□ -1.81
COL9A1-209ENST00000489861 TMEM256-PLSCR3K7ERE1 68 aa3.72□□□□□ -1.81
COL9A1-209ENST00000489861 PSMB2P49721 201 aa3.72□□□□□ -1.81
COL9A1-209ENST00000489861 HSD52Q0P140 79 aa3.72□□□□□ -1.81
COL9A1-209ENST00000489861 H3BUT2 72 aa3.71□□□□□ -1.82
COL9A1-209ENST00000489861 OBSCN-AS1Q96MR7 158 aa3.71□□□□□ -1.82
COL9A1-209ENST00000489861 ORMDL1Q9P0S3 153 aa3.71□□□□□ -1.82
COL9A1-209ENST00000489861 C2orf91Q6ZV80 131 aa3.7□□□□□ -1.82
COL9A1-209ENST00000489861 Q96NJ1 140 aa3.7□□□□□ -1.82
COL9A1-209ENST00000489861 A0A087WSZ3 146 aa3.69□□□□□ -1.82
COL9A1-209ENST00000489861 A0A0A0MQY5 61 aa3.69□□□□□ -1.82
COL9A1-209ENST00000489861 TRBV7-4A0A0J9YYF1 115 aa3.69□□□□□ -1.82
COL9A1-209ENST00000489861 ANKRD29Q8N6D5 301 aa3.69□□□□□ -1.82
COL9A1-209ENST00000489861 KRTAP23-1A1A580 65 aa3.68□□□□□ -1.82
COL9A1-209ENST00000489861 KRTAP5-9P26371 169 aa3.68□□□□□ -1.82
COL9A1-209ENST00000489861 FAM218AQ96MZ4 157 aa3.68□□□□□ -1.82
COL9A1-209ENST00000489861 UQCR10Q9UDW1 63 aa3.68□□□□□ -1.82
COL9A1-209ENST00000489861 FAM236DA0A1B0GTK5 79 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 FAM236CP0DP71 79 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 FXYD2P54710 66 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 UBE2V1Q13404 147 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 MTURNQ8N3F0 131 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 C20orf166-AS1Q96NR2 134 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 SIGMAR1Q99720 223 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 RBM12B-AS1Q9P1G2 102 aa3.67□□□□□ -1.82
COL9A1-209ENST00000489861 TRACP01848 142 aa3.66□□□□□ -1.82
COL9A1-209ENST00000489861 SCGB1C2P0DMR2 95 aa3.66□□□□□ -1.82
COL9A1-209ENST00000489861 LINC00313P59037 77 aa3.66□□□□□ -1.82
COL9A1-209ENST00000489861 A8MUU9 505 aa3.65□□□□□ -1.83
COL9A1-209ENST00000489861 IGKV4-1P06312 121 aa3.65□□□□□ -1.83
COL9A1-209ENST00000489861 DSCR8Q96T75 97 aa3.65□□□□□ -1.83
COL9A1-209ENST00000489861 CCKP06307 115 aa3.64□□□□□ -1.83
COL9A1-209ENST00000489861 RBM3P98179 157 aaKnown RBP3.64□□□□□ -1.83
COL9A1-209ENST00000489861 PYY3Q5JQD4 70 aa3.64□□□□□ -1.83
COL9A1-209ENST00000489861 KRTAP2-2Q9BYT5 123 aa3.64□□□□□ -1.83
COL9A1-209ENST00000489861 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
COL9A1-209ENST00000489861 A0A1W2PNM2 257 aa3.63□□□□□ -1.83
COL9A1-209ENST00000489861 C8orf87E5RJ46 101 aa3.63□□□□□ -1.83
COL9A1-209ENST00000489861 J3KT08 172 aa3.63□□□□□ -1.83
COL9A1-209ENST00000489861 A0A1B0GW54 56 aa3.62□□□□□ -1.83
COL9A1-209ENST00000489861 M0R143 59 aa3.62□□□□□ -1.83
COL9A1-209ENST00000489861 LYRM7Q5U5X0 104 aa3.62□□□□□ -1.83
COL9A1-209ENST00000489861 C9JAW5 83 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 JMJD7-PLA2G4BH0Y9G9 81 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 K7ERJ3 54 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 NDUFB1O75438 58 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 PDE6GP18545 87 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 DSCR10P59022 87 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 VPS25Q9BRG1 176 aa3.61□□□□□ -1.83
COL9A1-209ENST00000489861 ATXN8Q156A1 80 aa3.6□□□□□ -1.83
COL9A1-209ENST00000489861 IGHV6-1A0A0B4J1U7 121 aa3.59□□□□□ -1.83
COL9A1-209ENST00000489861 A0A1B0GV72 72 aa3.59□□□□□ -1.83
COL9A1-209ENST00000489861 BAALC-AS2P0C853 105 aa3.59□□□□□ -1.83
COL9A1-209ENST00000489861 LINC00472Q9H8W2 130 aa3.59□□□□□ -1.83
COL9A1-209ENST00000489861 A0A1B0GVX0 72 aa3.58□□□□□ -1.84
COL9A1-209ENST00000489861 LOC110117498A0A087WWA1 95 aa3.55□□□□□ -1.84
COL9A1-209ENST00000489861 KRTAP16-1A8MUX0 517 aa3.55□□□□□ -1.84
COL9A1-209ENST00000489861 SMIM6P0DI80 62 aa3.55□□□□□ -1.84
COL9A1-209ENST00000489861 DEFB116Q30KQ4 102 aa3.55□□□□□ -1.84
COL9A1-209ENST00000489861 Q6ZQT0 140 aa3.55□□□□□ -1.84
COL9A1-209ENST00000489861 TSTD3H0UI37 97 aa3.54□□□□□ -1.84
COL9A1-209ENST00000489861 A8MWP4 228 aa3.53□□□□□ -1.84
COL9A1-209ENST00000489861 NREPQ16612 68 aa3.52□□□□□ -1.85
COL9A1-209ENST00000489861 Q8N9P0 234 aaPredicted RBP3.52□□□□□ -1.85
COL9A1-209ENST00000489861 ZCCHC13Q8WW36 166 aaKnown RBP3.52□□□□□ -1.85
COL9A1-209ENST00000489861 A6NN06 94 aa3.51□□□□□ -1.85
COL9A1-209ENST00000489861 HRES1P13985 223 aa3.51□□□□□ -1.85
COL9A1-209ENST00000489861 SPRR2EP22531 72 aa3.51□□□□□ -1.85
COL9A1-209ENST00000489861 SPRR2BP35325 72 aa3.51□□□□□ -1.85
COL9A1-209ENST00000489861 SPRR2AP35326 72 aa3.51□□□□□ -1.85
COL9A1-209ENST00000489861 NOTCH2NLQ7Z3S9 236 aa3.5□□□□□ -1.85
COL9A1-209ENST00000489861 MPLKIPQ8TAP9 179 aa3.5□□□□□ -1.85
COL9A1-209ENST00000489861 H3BT86 120 aa3.49□□□□□ -1.85
COL9A1-209ENST00000489861 Q6ZVQ6 151 aa3.49□□□□□ -1.85
COL9A1-209ENST00000489861 C14orf132Q9NPU4 83 aa3.49□□□□□ -1.85
COL9A1-209ENST00000489861 C8orf17Q9NRJ1 99 aa3.49□□□□□ -1.85
COL9A1-209ENST00000489861 SPINK7P58062 85 aa3.48□□□□□ -1.85
COL9A1-209ENST00000489861 PRR15Q8IV56 129 aa3.48□□□□□ -1.85
COL9A1-209ENST00000489861 BATFQ16520 125 aa3.47□□□□□ -1.85
COL9A1-209ENST00000489861 WFDC13Q8IUB5 93 aa3.47□□□□□ -1.85
COL9A1-209ENST00000489861 TMEM254Q8TBM7 123 aa3.47□□□□□ -1.85
COL9A1-209ENST00000489861 KRTAP3-1Q9BYR8 98 aa3.47□□□□□ -1.85
COL9A1-209ENST00000489861 IGKV3D-7A0A0C4DH55 119 aa3.46□□□□□ -1.86
COL9A1-209ENST00000489861 MRPL34Q9BQ48 92 aaKnown RBP3.46□□□□□ -1.86
COL9A1-209ENST00000489861 NAA38Q9BRA0 125 aaKnown RBP3.46□□□□□ -1.86
COL9A1-209ENST00000489861 BPY2O14599 106 aa3.45□□□□□ -1.86
COL9A1-209ENST00000489861 NDUFS5O43920 106 aa3.45□□□□□ -1.86
COL9A1-209ENST00000489861 A0A1W2PPM0 123 aa3.44□□□□□ -1.86
COL9A1-209ENST00000489861 hDV103S1A0JD37 113 aa3.44□□□□□ -1.86
COL9A1-209ENST00000489861 DSTQ03001 7570 aaKnown RBP3.43□□□□□ -1.86
COL9A1-209ENST00000489861 SPRR2FQ96RM1 72 aa3.43□□□□□ -1.86
COL9A1-209ENST00000489861 MMP24-AS1A0A0U1RRL7 71 aa3.42□□□□□ -1.86
COL9A1-209ENST00000489861 LCE1AQ5T7P2 110 aa3.42□□□□□ -1.86
COL9A1-209ENST00000489861 K7EQZ3 153 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms