RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 ETDCA0A1B0GVM5 59 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 MT1AP04731 61 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 CRIP1P50238 77 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 ATXN8Q156A1 80 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 RNF213Q63HN8 5207 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 DOPEY1Q5JWR5 2465 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 ANKRD11Q6UB99 2663 aaPredicted RBP-0.38□□□□□ -2.47
RFC4-213ENST00000489028 NBEAL2Q6ZNJ1 2754 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 DNAH8Q96JB1 4490 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 BIRC6Q9NR09 4857 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 KIAA0586Q9BVV6 1533 aa-0.38□□□□□ -2.47
RFC4-213ENST00000489028 RELNP78509 3460 aa-0.39□□□□□ -2.47
RFC4-213ENST00000489028 PLECQ15149 4684 aaKnown RBP-0.39□□□□□ -2.47
RFC4-213ENST00000489028 LAMA3Q16787 3333 aa-0.39□□□□□ -2.47
RFC4-213ENST00000489028 CMYA5Q8N3K9 4069 aa-0.39□□□□□ -2.47
RFC4-213ENST00000489028 MTORP42345 2549 aa-0.39□□□□□ -2.47
RFC4-213ENST00000489028 CEP290O15078 2479 aa-0.39□□□□□ -2.47
RFC4-213ENST00000489028 WDR87Q6ZQQ6 2873 aa-0.39□□□□□ -2.47
RFC4-213ENST00000489028 TEX15Q9BXT5 2789 aa-0.4□□□□□ -2.47
RFC4-213ENST00000489028 MGAM2Q2M2H8 2515 aa-0.4□□□□□ -2.47
RFC4-213ENST00000489028 DEFB106AQ8N104 65 aa-0.4□□□□□ -2.47
RFC4-213ENST00000489028 SMCO4Q9NRQ5 59 aa-0.4□□□□□ -2.47
RFC4-213ENST00000489028 RNF17Q9BXT8 1623 aaKnown RBP-0.4□□□□□ -2.47
RFC4-213ENST00000489028 NBEAQ8NFP9 2946 aa-0.4□□□□□ -2.47
RFC4-213ENST00000489028 RANBP2P49792 3224 aaKnown RBP-0.4□□□□□ -2.47
RFC4-213ENST00000489028 ZC3H13Q5T200 1668 aaKnown RBP-0.4□□□□□ -2.47
RFC4-213ENST00000489028 NEBP20929 6669 aa-0.4□□□□□ -2.47
RFC4-213ENST00000489028 TRIOO75962 3097 aa-0.41□□□□□ -2.47
RFC4-213ENST00000489028 TJP1Q07157 1748 aa-0.41□□□□□ -2.47
RFC4-213ENST00000489028 ACACBO00763 2458 aa-0.41□□□□□ -2.47
RFC4-213ENST00000489028 LAMA2P24043 3122 aaKnown RBP-0.41□□□□□ -2.47
RFC4-213ENST00000489028 RYR3Q15413 4870 aa-0.41□□□□□ -2.47
RFC4-213ENST00000489028 UTP20O75691 2785 aaKnown RBP-0.41□□□□□ -2.47
RFC4-213ENST00000489028 DEFB114Q30KQ6 69 aa-0.41□□□□□ -2.48
RFC4-213ENST00000489028 DNHD1Q96M86 4753 aa-0.41□□□□□ -2.48
RFC4-213ENST00000489028 INO80Q9ULG1 1556 aaPredicted RBP-0.41□□□□□ -2.48
RFC4-213ENST00000489028 NIPBLQ6KC79 2804 aaeCLIP-0.42□□□□□ -2.48
RFC4-213ENST00000489028 DUOX2Q9NRD8 1548 aa-0.42□□□□□ -2.48
RFC4-213ENST00000489028 SPTBN5Q9NRC6 3674 aaKnown RBP-0.42□□□□□ -2.48
RFC4-213ENST00000489028 PDCD5O14737 125 aa-0.42□□□□□ -2.48
RFC4-213ENST00000489028 S4R3F8 94 aa-0.42□□□□□ -2.48
RFC4-213ENST00000489028 RYR2Q92736 4967 aa-0.42□□□□□ -2.48
RFC4-213ENST00000489028 SPENQ96T58 3664 aaKnown RBP-0.43□□□□□ -2.48
RFC4-213ENST00000489028 DIP2AQ14689 1571 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 C5orf42Q9H799 3197 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 MINOS1Q5TGZ0 78 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 GNG13Q9P2W3 67 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 KIAA1109Q2LD37 5005 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 RIF1Q5UIP0 2472 aaKnown RBP-0.43□□□□□ -2.48
RFC4-213ENST00000489028 DYNC1H1Q14204 4646 aaKnown RBP-0.43□□□□□ -2.48
RFC4-213ENST00000489028 DNAH7Q8WXX0 4024 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 UGGT2Q9NYU1 1516 aa-0.43□□□□□ -2.48
RFC4-213ENST00000489028 MYO5CQ9NQX4 1742 aa-0.44□□□□□ -2.48
RFC4-213ENST00000489028 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.44□□□□□ -2.48
RFC4-213ENST00000489028 SRCAPQ6ZRS2 3230 aa-0.44□□□□□ -2.48
RFC4-213ENST00000489028 TLN2Q9Y4G6 2542 aa-0.44□□□□□ -2.48
RFC4-213ENST00000489028 WT1-ASQ06250 92 aa-0.44□□□□□ -2.48
RFC4-213ENST00000489028 HILPDAQ9Y5L2 63 aa-0.44□□□□□ -2.48
RFC4-213ENST00000489028 CDC42BPGQ6DT37 1551 aa-0.45□□□□□ -2.48
RFC4-213ENST00000489028 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.45□□□□□ -2.48
RFC4-213ENST00000489028 USP9XQ93008 2570 aaPredicted RBP-0.45□□□□□ -2.48
RFC4-213ENST00000489028 NRAPQ86VF7 1730 aa-0.45□□□□□ -2.48
RFC4-213ENST00000489028 BPTFQ12830 3046 aa-0.45□□□□□ -2.48
RFC4-213ENST00000489028 COL12A1Q99715 3063 aa-0.45□□□□□ -2.48
RFC4-213ENST00000489028 ANKRD36CQ5JPF3 1778 aa-0.45□□□□□ -2.48
RFC4-213ENST00000489028 DNAH17Q9UFH2 4485 aa-0.45□□□□□ -2.48
RFC4-213ENST00000489028 FRYQ5TBA9 3013 aa-0.46□□□□□ -2.48
RFC4-213ENST00000489028 NHSQ6T4R5 1651 aa-0.46□□□□□ -2.48
RFC4-213ENST00000489028 LRRIQ1Q96JM4 1722 aa-0.46□□□□□ -2.48
RFC4-213ENST00000489028 PARP4Q9UKK3 1724 aaKnown RBP-0.46□□□□□ -2.48
RFC4-213ENST00000489028 KRTAP19-5Q3LI72 72 aa-0.46□□□□□ -2.48
RFC4-213ENST00000489028 IQGAP3Q86VI3 1631 aa-0.48□□□□□ -2.49
RFC4-213ENST00000489028 RPS27P42677 84 aaKnown RBP-0.48□□□□□ -2.49
RFC4-213ENST00000489028 MT1HP80294 61 aa-0.48□□□□□ -2.49
RFC4-213ENST00000489028 RPS27LQ71UM5 84 aaKnown RBP-0.48□□□□□ -2.49
RFC4-213ENST00000489028 C6orf48Q9UBA6 75 aa-0.48□□□□□ -2.49
RFC4-213ENST00000489028 ABCC6O95255 1503 aa-0.48□□□□□ -2.49
RFC4-213ENST00000489028 CELSR3Q9NYQ7 3312 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 ITSN2Q9NZM3 1697 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 DEFB110Q30KQ9 67 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 CHD7Q9P2D1 2997 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 DNAH10Q8IVF4 4471 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 ASXL1Q8IXJ9 1541 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 DNMBPQ6XZF7 1577 aa-0.49□□□□□ -2.49
RFC4-213ENST00000489028 SPTAN1Q13813 2472 aaKnown RBP-0.49□□□□□ -2.49
RFC4-213ENST00000489028 DNAH5Q8TE73 4624 aa-0.5□□□□□ -2.49
RFC4-213ENST00000489028 H3BUA1 57 aa-0.5□□□□□ -2.49
RFC4-213ENST00000489028 ADGRG4Q8IZF6 3080 aa-0.5□□□□□ -2.49
RFC4-213ENST00000489028 TOGARAM1Q9Y4F4 1720 aa-0.5□□□□□ -2.49
RFC4-213ENST00000489028 CSMD1Q96PZ7 3565 aa-0.5□□□□□ -2.49
RFC4-213ENST00000489028 TRRAPQ9Y4A5 3859 aa-0.5□□□□□ -2.49
RFC4-213ENST00000489028 MYO9AB2RTY4 2548 aa-0.51□□□□□ -2.49
RFC4-213ENST00000489028 LRBAP50851 2863 aa-0.51□□□□□ -2.49
RFC4-213ENST00000489028 EYSQ5T1H1 3165 aa-0.51□□□□□ -2.49
RFC4-213ENST00000489028 ABCA9Q8IUA7 1624 aa-0.51□□□□□ -2.49
RFC4-213ENST00000489028 MGAQ8IWI9 3026 aa-0.51□□□□□ -2.49
RFC4-213ENST00000489028 COL6A5A8TX70 2615 aa-0.51□□□□□ -2.49
RFC4-213ENST00000489028 C3P01024 1663 aa-0.52□□□□□ -2.49
RFC4-213ENST00000489028 KIF1AQ12756 1690 aa-0.52□□□□□ -2.49
RFC4-213ENST00000489028 SMR3BP02814 79 aaPredicted RBP-0.52□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms