RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 BAGE2Q86Y30 109 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 ZNF625Q96I27 306 aaPredicted RBP1.25□□□□□ -2.21
VPS41-213ENST00000485955 LINC01558Q9Y6Z2 57 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 MED12LQ86YW9 2145 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 TRBV7-4A0A0J9YYF1 115 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 M0R3E3 92 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 HCRTO43612 131 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 MGPP08493 103 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 HMGA1P17096 107 aaKnown RBP1.24□□□□□ -2.21
VPS41-213ENST00000485955 KRTAP12-1P59990 96 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 COX17Q14061 63 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 WFDC6Q9BQY6 131 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 ANKRD36A6QL64 1941 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 HEATR5BQ9P2D3 2071 aa1.24□□□□□ -2.21
VPS41-213ENST00000485955 TRAV1-2A0A0B4J238 106 aa1.23□□□□□ -2.21
VPS41-213ENST00000485955 H3BVH4 76 aa1.23□□□□□ -2.21
VPS41-213ENST00000485955 ZNF137PP52743 207 aa1.23□□□□□ -2.21
VPS41-213ENST00000485955 Q6ZRN7 208 aaPredicted RBP1.23□□□□□ -2.21
VPS41-213ENST00000485955 LINC00846Q9NV44 126 aa1.23□□□□□ -2.21
VPS41-213ENST00000485955 PLAC8Q9NZF1 115 aa1.23□□□□□ -2.21
VPS41-213ENST00000485955 SNURFQ9Y675 71 aa1.23□□□□□ -2.21
VPS41-213ENST00000485955 GPR98Q8WXG9 6306 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 NEBP20929 6669 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 TRGV2A0A075B6R0 118 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 FXYD6-FXYD2A0A087WZ82 144 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 H0Y9P7 68 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 PIN1P1O15428 100 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 FXYD4P59646 89 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 DEFB107AQ8IZN7 70 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 LINC00208Q96KT6 92 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 Q96NJ1 140 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 GNG13Q9P2W3 67 aa1.22□□□□□ -2.21
VPS41-213ENST00000485955 TRGV1A0A0A0MS02 117 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 A0A1B0GUT8 65 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 CAV3P56539 151 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 ATXN8Q156A1 80 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 LELP1Q5T871 98 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 GDF5OSQ5U4N7 250 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 Q6ZQY7 126 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 SMIM4Q8WVI0 70 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 SPRR4Q96PI1 79 aa1.21□□□□□ -2.22
VPS41-213ENST00000485955 SYNE2Q8WXH0 6885 aaKnown RBP1.21□□□□□ -2.22
VPS41-213ENST00000485955 ACYP2P14621 99 aa1.2□□□□□ -2.22
VPS41-213ENST00000485955 S100A3P33764 101 aa1.2□□□□□ -2.22
VPS41-213ENST00000485955 DEFB133Q30KQ1 61 aa1.2□□□□□ -2.22
VPS41-213ENST00000485955 CCL19Q99731 98 aa1.2□□□□□ -2.22
VPS41-213ENST00000485955 HEATR1Q9H583 2144 aaKnown RBP1.19□□□□□ -2.22
VPS41-213ENST00000485955 USH2AO75445 5202 aa1.19□□□□□ -2.22
VPS41-213ENST00000485955 SPINK7P58062 85 aa1.19□□□□□ -2.22
VPS41-213ENST00000485955 TMEM263Q8WUH6 116 aaKnown RBP1.19□□□□□ -2.22
VPS41-213ENST00000485955 OBSCN-AS1Q96MR7 158 aa1.19□□□□□ -2.22
VPS41-213ENST00000485955 FAM103A1Q9BTL3 118 aaKnown RBP1.19□□□□□ -2.22
VPS41-213ENST00000485955 FXYD6Q9H0Q3 95 aa1.19□□□□□ -2.22
VPS41-213ENST00000485955 LINC00472Q9H8W2 130 aa1.19□□□□□ -2.22
VPS41-213ENST00000485955 LPAP08519 4548 aa1.18□□□□□ -2.22
VPS41-213ENST00000485955 A0A0D9SFI3 127 aa1.18□□□□□ -2.22
VPS41-213ENST00000485955 K7EIL1 84 aa1.18□□□□□ -2.22
VPS41-213ENST00000485955 NDUFB1O75438 58 aa1.18□□□□□ -2.22
VPS41-213ENST00000485955 SPATA8Q6RVD6 105 aa1.18□□□□□ -2.22
VPS41-213ENST00000485955 DOCK11Q5JSL3 2073 aa1.18□□□□□ -2.22
VPS41-213ENST00000485955 IFI6P09912 130 aa1.17□□□□□ -2.22
VPS41-213ENST00000485955 NREPQ16612 68 aa1.17□□□□□ -2.22
VPS41-213ENST00000485955 C10orf113Q5VZT2 155 aa1.17□□□□□ -2.22
VPS41-213ENST00000485955 C10orf99Q6UWK7 81 aa1.17□□□□□ -2.22
VPS41-213ENST00000485955 NINQ8N4C6 2090 aa1.17□□□□□ -2.22
VPS41-213ENST00000485955 TRAV21A0A0B4J279 112 aa1.16□□□□□ -2.22
VPS41-213ENST00000485955 TRBV6-1A0A0K0K1D8 114 aa1.16□□□□□ -2.22
VPS41-213ENST00000485955 SNRPGP15A8MWD9 76 aa1.16□□□□□ -2.22
VPS41-213ENST00000485955 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.16□□□□□ -2.22
VPS41-213ENST00000485955 DNAH8Q96JB1 4490 aa1.16□□□□□ -2.22
VPS41-213ENST00000485955 ARFGEF3Q5TH69 2177 aa1.15□□□□□ -2.22
VPS41-213ENST00000485955 TNCP24821 2201 aa1.15□□□□□ -2.23
VPS41-213ENST00000485955 STATHP02808 62 aa1.15□□□□□ -2.23
VPS41-213ENST00000485955 UNQ6190/PRO20217Q6UXQ8 127 aa1.15□□□□□ -2.23
VPS41-213ENST00000485955 WFDC9Q8NEX5 89 aa1.15□□□□□ -2.23
VPS41-213ENST00000485955 SMIM11BQ8TCY0 68 aa1.15□□□□□ -2.23
VPS41-213ENST00000485955 TRBV30A0A0K0K1B3 111 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 SPTY2D1-AS1A0A0U1RR47 76 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 LINC01549A6NIU2 74 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 DEFB108AA8MXU0 73 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 G3V318 75 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 DEFB112Q30KQ8 113 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 LINC00575Q6W349 94 aa1.14□□□□□ -2.23
VPS41-213ENST00000485955 GVQW2A0A096LPI5 108 aaPredicted RBP1.13□□□□□ -2.23
VPS41-213ENST00000485955 A0A1B0GU69 56 aa1.13□□□□□ -2.23
VPS41-213ENST00000485955 NCR3O14931 201 aa1.13□□□□□ -2.23
VPS41-213ENST00000485955 PCOTHQ58A44 107 aa1.13□□□□□ -2.23
VPS41-213ENST00000485955 Q6ZRX8 168 aa1.13□□□□□ -2.23
VPS41-213ENST00000485955 GAFA1Q96PS6 74 aa1.13□□□□□ -2.23
VPS41-213ENST00000485955 LY6G6CO95867 125 aa1.12□□□□□ -2.23
VPS41-213ENST00000485955 HAMPP81172 84 aa1.12□□□□□ -2.23
VPS41-213ENST00000485955 SPINK13Q1W4C9 94 aa1.12□□□□□ -2.23
VPS41-213ENST00000485955 PLAC4Q8WY50 150 aa1.12□□□□□ -2.23
VPS41-213ENST00000485955 MUC12Q9UKN1 5478 aa1.12□□□□□ -2.23
VPS41-213ENST00000485955 MACF1Q9UPN3 7388 aaKnown RBP1.11□□□□□ -2.23
VPS41-213ENST00000485955 LINC00959A0A1B0GUT2 108 aa1.11□□□□□ -2.23
VPS41-213ENST00000485955 ENHOQ6UWT2 76 aa1.11□□□□□ -2.23
VPS41-213ENST00000485955 NDUFA4O00483 81 aa1.1□□□□□ -2.23
VPS41-213ENST00000485955 COX7BP24311 80 aa1.1□□□□□ -2.23
VPS41-213ENST00000485955 RPL37P61927 97 aaKnown RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms