RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MRPL34Q9BQ48 92 aaKnown RBP8.02□□□□□ -1.12
USP40-214ENST00000483519 SRRM2Q9UQ35 2752 aaKnown RBP8.02□□□□□ -1.13
USP40-214ENST00000483519 C7orf65Q6ZTY9 151 aa8.01□□□□□ -1.13
USP40-214ENST00000483519 COL7A1Q02388 2944 aa8.01□□□□□ -1.13
USP40-214ENST00000483519 TENM2Q9NT68 2774 aa8□□□□□ -1.13
USP40-214ENST00000483519 HUWE1Q7Z6Z7 4374 aaKnown RBP7.99□□□□□ -1.13
USP40-214ENST00000483519 LINC00483Q53H64 154 aa7.99□□□□□ -1.13
USP40-214ENST00000483519 SPINK7P58062 85 aa7.99□□□□□ -1.13
USP40-214ENST00000483519 PANO1I0J062 215 aa7.95□□□□□ -1.14
USP40-214ENST00000483519 APLNQ9ULZ1 77 aa7.94□□□□□ -1.14
USP40-214ENST00000483519 DNAH10Q8IVF4 4471 aa7.94□□□□□ -1.14
USP40-214ENST00000483519 SPACA4Q8TDM5 124 aa7.92□□□□□ -1.14
USP40-214ENST00000483519 A0A087X002 238 aa7.9□□□□□ -1.14
USP40-214ENST00000483519 NOTCH2NLQ7Z3S9 236 aa7.9□□□□□ -1.14
USP40-214ENST00000483519 ACYP2P14621 99 aa7.89□□□□□ -1.15
USP40-214ENST00000483519 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.88□□□□□ -1.15
USP40-214ENST00000483519 NBDYA0A0U1RRE5 68 aa7.87□□□□□ -1.15
USP40-214ENST00000483519 KRTAP13-3Q3SY46 172 aa7.87□□□□□ -1.15
USP40-214ENST00000483519 LINC01554Q52M75 96 aa7.86□□□□□ -1.15
USP40-214ENST00000483519 LYSTQ99698 3801 aa7.86□□□□□ -1.15
USP40-214ENST00000483519 Q5W150 140 aa7.86□□□□□ -1.15
USP40-214ENST00000483519 DYNC2H1Q8NCM8 4307 aaKnown RBP7.85□□□□□ -1.15
USP40-214ENST00000483519 SEC61BP60468 96 aaKnown RBP7.85□□□□□ -1.15
USP40-214ENST00000483519 Q6ZRN7 208 aaPredicted RBP7.85□□□□□ -1.15
USP40-214ENST00000483519 IGLV5-52A0A0A0MRZ9 124 aa7.84□□□□□ -1.15
USP40-214ENST00000483519 SPINK6Q6UWN8 80 aa7.84□□□□□ -1.15
USP40-214ENST00000483519 PSORS1C2Q9UIG4 136 aa7.84□□□□□ -1.15
USP40-214ENST00000483519 ANAPC11Q9NYG5 84 aa7.83□□□□□ -1.16
USP40-214ENST00000483519 ZNF861PO60384 105 aa7.82□□□□□ -1.16
USP40-214ENST00000483519 DMAC1Q96GE9 116 aa7.82□□□□□ -1.16
USP40-214ENST00000483519 DNAH7Q8WXX0 4024 aa7.82□□□□□ -1.16
USP40-214ENST00000483519 LY6G6CO95867 125 aa7.81□□□□□ -1.16
USP40-214ENST00000483519 CSMD3Q7Z407 3707 aa7.79□□□□□ -1.16
USP40-214ENST00000483519 A0A1B0GU69 56 aa7.78□□□□□ -1.16
USP40-214ENST00000483519 FAM229AH3BQW9 127 aa7.75□□□□□ -1.17
USP40-214ENST00000483519 A0A087WTM6 91 aa7.75□□□□□ -1.17
USP40-214ENST00000483519 CIRBP-AS1Q8TBR5 109 aa7.75□□□□□ -1.17
USP40-214ENST00000483519 RTL8CO15255 209 aa7.73□□□□□ -1.17
USP40-214ENST00000483519 SPATA8Q6RVD6 105 aa7.72□□□□□ -1.17
USP40-214ENST00000483519 PRAC1Q96KF2 57 aa7.71□□□□□ -1.18
USP40-214ENST00000483519 STARD9Q9P2P6 4700 aa7.7□□□□□ -1.18
USP40-214ENST00000483519 ALMS1Q8TCU4 4167 aa7.7□□□□□ -1.18
USP40-214ENST00000483519 IGKV2-30P06310 120 aa7.7□□□□□ -1.18
USP40-214ENST00000483519 SSBP3-AS1Q7Z2R9 100 aa7.7□□□□□ -1.18
USP40-214ENST00000483519 UQCR11O14957 56 aa7.69□□□□□ -1.18
USP40-214ENST00000483519 IGLV7-43P04211 117 aa7.69□□□□□ -1.18
USP40-214ENST00000483519 MIR22HGQ0VDD5 57 aa7.68□□□□□ -1.18
USP40-214ENST00000483519 RETNLBQ9BQ08 111 aa7.66□□□□□ -1.18
USP40-214ENST00000483519 C1orf134Q5TEV5 83 aa7.65□□□□□ -1.18
USP40-214ENST00000483519 ADM2Q7Z4H4 148 aa7.65□□□□□ -1.18
USP40-214ENST00000483519 PLECQ15149 4684 aaKnown RBP7.63□□□□□ -1.19
USP40-214ENST00000483519 DNAH8Q96JB1 4490 aa7.61□□□□□ -1.19
USP40-214ENST00000483519 DNAH6Q9C0G6 4158 aa7.6□□□□□ -1.19
USP40-214ENST00000483519 FRAS1Q86XX4 4008 aa7.58□□□□□ -1.2
USP40-214ENST00000483519 VPS13DQ5THJ4 4388 aa7.58□□□□□ -1.2
USP40-214ENST00000483519 IGKV2D-30A0A075B6S6 120 aa7.57□□□□□ -1.2
USP40-214ENST00000483519 KRTAP16-1A8MUX0 517 aa7.57□□□□□ -1.2
USP40-214ENST00000483519 HECTD4Q9Y4D8 3996 aa7.54□□□□□ -1.2
USP40-214ENST00000483519 KRTAP13-2Q52LG2 175 aa7.5□□□□□ -1.21
USP40-214ENST00000483519 SACSQ9NZJ4 4579 aa7.49□□□□□ -1.21
USP40-214ENST00000483519 KMT2CQ8NEZ4 4911 aaKnown RBP7.48□□□□□ -1.21
USP40-214ENST00000483519 CSAG1Q6PB30 78 aa7.48□□□□□ -1.21
USP40-214ENST00000483519 RYR2Q92736 4967 aa7.47□□□□□ -1.21
USP40-214ENST00000483519 KMT2AQ03164 3969 aa7.46□□□□□ -1.21
USP40-214ENST00000483519 DNAH17Q9UFH2 4485 aa7.45□□□□□ -1.22
USP40-214ENST00000483519 A0A1B0GVY2 172 aa7.43□□□□□ -1.22
USP40-214ENST00000483519 SPINK1P00995 79 aa7.43□□□□□ -1.22
USP40-214ENST00000483519 HYDINQ4G0P3 5121 aa7.42□□□□□ -1.22
USP40-214ENST00000483519 Q6ZSA8 131 aa7.4□□□□□ -1.22
USP40-214ENST00000483519 Q8N1X5 172 aa7.38□□□□□ -1.23
USP40-214ENST00000483519 KRTAP10-2P60368 255 aa7.37□□□□□ -1.23
USP40-214ENST00000483519 DNAH2Q9P225 4427 aa7.37□□□□□ -1.23
USP40-214ENST00000483519 KRTAP1-4P0C5Y4 121 aa7.36□□□□□ -1.23
USP40-214ENST00000483519 RYR3Q15413 4870 aa7.35□□□□□ -1.23
USP40-214ENST00000483519 A8MUU9 505 aa7.32□□□□□ -1.24
USP40-214ENST00000483519 H0YAA0 97 aa7.32□□□□□ -1.24
USP40-214ENST00000483519 TYMSOSQ8TAI1 123 aa7.32□□□□□ -1.24
USP40-214ENST00000483519 KRTAP10-1P60331 282 aa7.29□□□□□ -1.24
USP40-214ENST00000483519 ROMO1P60602 79 aa7.28□□□□□ -1.24
USP40-214ENST00000483519 DNAH11Q96DT5 4516 aa7.27□□□□□ -1.24
USP40-214ENST00000483519 A0A1B0GU33 70 aa7.27□□□□□ -1.25
USP40-214ENST00000483519 FAT2Q9NYQ8 4349 aa7.26□□□□□ -1.25
USP40-214ENST00000483519 KRTAP25-1Q3LHN0 102 aa7.26□□□□□ -1.25
USP40-214ENST00000483519 LUZP6Q538Z0 58 aa7.25□□□□□ -1.25
USP40-214ENST00000483519 LINC00304Q8N9R0 145 aa7.25□□□□□ -1.25
USP40-214ENST00000483519 RPS29P62273 56 aaKnown RBP7.23□□□□□ -1.25
USP40-214ENST00000483519 H1FX-AS1Q4G0G2 97 aa7.23□□□□□ -1.25
USP40-214ENST00000483519 PKD1P98161 4303 aa7.21□□□□□ -1.25
USP40-214ENST00000483519 DNAH5Q8TE73 4624 aa7.2□□□□□ -1.26
USP40-214ENST00000483519 K7ERS5 55 aa7.17□□□□□ -1.26
USP40-214ENST00000483519 C20orf166-AS1Q96NR2 134 aa7.16□□□□□ -1.26
USP40-214ENST00000483519 KRTAP3-1Q9BYR8 98 aa7.15□□□□□ -1.26
USP40-214ENST00000483519 LRP1BQ9NZR2 4599 aa7.15□□□□□ -1.26
USP40-214ENST00000483519 C9orf92A6NGG3 77 aa7.12□□□□□ -1.27
USP40-214ENST00000483519 DYNC1H1Q14204 4646 aaKnown RBP7.12□□□□□ -1.27
USP40-214ENST00000483519 P0C880 135 aa7.12□□□□□ -1.27
USP40-214ENST00000483519 PKHD1P08F94 4074 aa7.11□□□□□ -1.27
USP40-214ENST00000483519 EPPK1P58107 5090 aaKnown RBP7.11□□□□□ -1.27
USP40-214ENST00000483519 SMR3BP02814 79 aaPredicted RBP7.09□□□□□ -1.27
USP40-214ENST00000483519 VPS13BQ7Z7G8 4022 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 396.9 ms