RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 FP248Q71RG6 208 aaPredicted RBP6.84□□□□□ -1.31
PTPRF-213ENST00000481019 IMUPQ9GZP8 106 aa6.84□□□□□ -1.31
PTPRF-213ENST00000481019 KRTAP13-3Q3SY46 172 aa6.83□□□□□ -1.32
PTPRF-213ENST00000481019 NDUFB1O75438 58 aa6.82□□□□□ -1.32
PTPRF-213ENST00000481019 LINC00472Q9H8W2 130 aa6.81□□□□□ -1.32
PTPRF-213ENST00000481019 FAT4Q6V0I7 4981 aa6.78□□□□□ -1.32
PTPRF-213ENST00000481019 IGKV3D-7A0A0C4DH55 119 aa6.77□□□□□ -1.33
PTPRF-213ENST00000481019 IGKV4-1P06312 121 aa6.77□□□□□ -1.33
PTPRF-213ENST00000481019 MT-ATP8P03928 68 aa6.76□□□□□ -1.33
PTPRF-213ENST00000481019 HIST1H4AP62805 103 aaKnown RBP6.76□□□□□ -1.33
PTPRF-213ENST00000481019 A8MWP4 228 aa6.75□□□□□ -1.33
PTPRF-213ENST00000481019 C1orf195Q5TG92 126 aa6.74□□□□□ -1.33
PTPRF-213ENST00000481019 Q96NJ1 140 aa6.73□□□□□ -1.33
PTPRF-213ENST00000481019 DSCR10P59022 87 aa6.72□□□□□ -1.33
PTPRF-213ENST00000481019 DEFB116Q30KQ4 102 aa6.72□□□□□ -1.33
PTPRF-213ENST00000481019 PRR15Q8IV56 129 aa6.72□□□□□ -1.33
PTPRF-213ENST00000481019 XP32Q5T750 250 aa6.71□□□□□ -1.34
PTPRF-213ENST00000481019 C9orf92A6NGG3 77 aa6.7□□□□□ -1.34
PTPRF-213ENST00000481019 KRTAP4-1Q9BYQ7 146 aa6.7□□□□□ -1.34
PTPRF-213ENST00000481019 A0A1B0GVX0 72 aa6.69□□□□□ -1.34
PTPRF-213ENST00000481019 C8orf87E5RJ46 101 aa6.69□□□□□ -1.34
PTPRF-213ENST00000481019 SCGB1A1P11684 91 aa6.69□□□□□ -1.34
PTPRF-213ENST00000481019 K7EQZ3 153 aa6.68□□□□□ -1.34
PTPRF-213ENST00000481019 IGHV6-1A0A0B4J1U7 121 aa6.66□□□□□ -1.34
PTPRF-213ENST00000481019 HCG22E2RYF7 251 aa6.65□□□□□ -1.34
PTPRF-213ENST00000481019 LINC00313P59037 77 aa6.65□□□□□ -1.34
PTPRF-213ENST00000481019 Q8N9L7 120 aa6.65□□□□□ -1.34
PTPRF-213ENST00000481019 SMIM20Q8N5G0 67 aa6.63□□□□□ -1.35
PTPRF-213ENST00000481019 C8orf17Q9NRJ1 99 aa6.63□□□□□ -1.35
PTPRF-213ENST00000481019 A0A087WVE0 104 aa6.62□□□□□ -1.35
PTPRF-213ENST00000481019 FAM236AA0A1B0GUQ0 79 aa6.62□□□□□ -1.35
PTPRF-213ENST00000481019 FAM236BA0A1B0GV22 79 aa6.62□□□□□ -1.35
PTPRF-213ENST00000481019 CASC2Q6XLA1 102 aa6.62□□□□□ -1.35
PTPRF-213ENST00000481019 hDV103S1A0JD37 113 aa6.61□□□□□ -1.35
PTPRF-213ENST00000481019 ATOX1O00244 68 aa6.61□□□□□ -1.35
PTPRF-213ENST00000481019 SEC61BP60468 96 aaKnown RBP6.6□□□□□ -1.35
PTPRF-213ENST00000481019 TMEM254Q8TBM7 123 aa6.6□□□□□ -1.35
PTPRF-213ENST00000481019 MMP24-AS1A0A0U1RRL7 71 aa6.58□□□□□ -1.36
PTPRF-213ENST00000481019 PCOTHQ58A44 107 aa6.58□□□□□ -1.36
PTPRF-213ENST00000481019 WFDC13Q8IUB5 93 aa6.57□□□□□ -1.36
PTPRF-213ENST00000481019 MRPL34Q9BQ48 92 aaKnown RBP6.57□□□□□ -1.36
PTPRF-213ENST00000481019 TP53AIP1Q9HCN2 124 aa6.57□□□□□ -1.36
PTPRF-213ENST00000481019 RPL37P61927 97 aaKnown RBP6.54□□□□□ -1.36
PTPRF-213ENST00000481019 TRAV7A0A075B6U4 112 aa6.52□□□□□ -1.37
PTPRF-213ENST00000481019 NDUFS5O43920 106 aa6.52□□□□□ -1.37
PTPRF-213ENST00000481019 LCE2AQ5TA79 106 aaPredicted RBP6.52□□□□□ -1.37
PTPRF-213ENST00000481019 UQCRQO14949 82 aa6.51□□□□□ -1.37
PTPRF-213ENST00000481019 ANAPC13Q9BS18 74 aa6.51□□□□□ -1.37
PTPRF-213ENST00000481019 A0A0U1RQV1 116 aa6.5□□□□□ -1.37
PTPRF-213ENST00000481019 NOTCH2NLQ7Z3S9 236 aa6.5□□□□□ -1.37
PTPRF-213ENST00000481019 SERP2Q8N6R1 65 aa6.5□□□□□ -1.37
PTPRF-213ENST00000481019 Q8N9P0 234 aaPredicted RBP6.5□□□□□ -1.37
PTPRF-213ENST00000481019 KRTAP19-2Q3LHN2 52 aa6.49□□□□□ -1.37
PTPRF-213ENST00000481019 C5orf47Q569G3 176 aa6.49□□□□□ -1.37
PTPRF-213ENST00000481019 OCR1Q9BZK8 76 aa6.48□□□□□ -1.37
PTPRF-213ENST00000481019 LCE2CQ5TA81 110 aa6.47□□□□□ -1.37
PTPRF-213ENST00000481019 KRTAP16-1A8MUX0 517 aa6.46□□□□□ -1.38
PTPRF-213ENST00000481019 MP68P56378 58 aa6.46□□□□□ -1.38
PTPRF-213ENST00000481019 Q75L30 129 aa6.45□□□□□ -1.38
PTPRF-213ENST00000481019 C20orf166-AS1Q96NR2 134 aa6.45□□□□□ -1.38
PTPRF-213ENST00000481019 A8MUU9 505 aa6.44□□□□□ -1.38
PTPRF-213ENST00000481019 H3BPC8 53 aa6.44□□□□□ -1.38
PTPRF-213ENST00000481019 COX7CP15954 63 aa6.44□□□□□ -1.38
PTPRF-213ENST00000481019 TRAV22A0A0B4J277 110 aa6.42□□□□□ -1.38
PTPRF-213ENST00000481019 FLGP20930 4061 aaPredicted RBP6.42□□□□□ -1.38
PTPRF-213ENST00000481019 ATP11AUNQ6ZP68 121 aa6.41□□□□□ -1.38
PTPRF-213ENST00000481019 H0Y9P7 68 aa6.39□□□□□ -1.39
PTPRF-213ENST00000481019 PCP4P48539 62 aa6.39□□□□□ -1.39
PTPRF-213ENST00000481019 ZCCHC13Q8WW36 166 aaKnown RBP6.38□□□□□ -1.39
PTPRF-213ENST00000481019 LOC101927531A0A1B0GV80 90 aa6.35□□□□□ -1.39
PTPRF-213ENST00000481019 MT1HP80294 61 aa6.35□□□□□ -1.39
PTPRF-213ENST00000481019 NDUFC1O43677 76 aa6.34□□□□□ -1.39
PTPRF-213ENST00000481019 C20orf197Q8N268 126 aa6.34□□□□□ -1.39
PTPRF-213ENST00000481019 C1orf64Q8NEQ6 169 aa6.34□□□□□ -1.39
PTPRF-213ENST00000481019 LINC00208Q96KT6 92 aa6.34□□□□□ -1.39
PTPRF-213ENST00000481019 KLKP1Q107X0 134 aa6.33□□□□□ -1.4
PTPRF-213ENST00000481019 Q5W150 140 aa6.31□□□□□ -1.4
PTPRF-213ENST00000481019 CCDC179H3BU77 68 aa6.28□□□□□ -1.4
PTPRF-213ENST00000481019 C7orf65Q6ZTY9 151 aa6.28□□□□□ -1.4
PTPRF-213ENST00000481019 IGKV2-30P06310 120 aa6.26□□□□□ -1.41
PTPRF-213ENST00000481019 CYP4F30PQ9H0H9 118 aa6.26□□□□□ -1.41
PTPRF-213ENST00000481019 SNURFQ9Y675 71 aa6.26□□□□□ -1.41
PTPRF-213ENST00000481019 IGKV2D-30A0A075B6S6 120 aa6.25□□□□□ -1.41
PTPRF-213ENST00000481019 COX6B2Q6YFQ2 88 aa6.24□□□□□ -1.41
PTPRF-213ENST00000481019 KRTAP9-2Q9BYQ4 174 aa6.23□□□□□ -1.41
PTPRF-213ENST00000481019 SPINK7P58062 85 aa6.22□□□□□ -1.41
PTPRF-213ENST00000481019 HRES1P13985 223 aa6.21□□□□□ -1.42
PTPRF-213ENST00000481019 KRTAP10-6P60371 365 aaPredicted RBP6.2□□□□□ -1.42
PTPRF-213ENST00000481019 LORP23490 312 aaPredicted RBP6.19□□□□□ -1.42
PTPRF-213ENST00000481019 SPANXA2-OT1Q8N9U9 137 aa6.19□□□□□ -1.42
PTPRF-213ENST00000481019 H7BZZ5 65 aa6.18□□□□□ -1.42
PTPRF-213ENST00000481019 ATP5EP56381 51 aaPredicted RBP6.18□□□□□ -1.42
PTPRF-213ENST00000481019 MPLKIPQ8TAP9 179 aa6.18□□□□□ -1.42
PTPRF-213ENST00000481019 TMEM258P61165 79 aa6.17□□□□□ -1.42
PTPRF-213ENST00000481019 M0R2T5 61 aa6.16□□□□□ -1.42
PTPRF-213ENST00000481019 KRTAP9-6A0A140TA67 174 aa6.13□□□□□ -1.43
PTPRF-213ENST00000481019 A8MUN3 132 aa6.12□□□□□ -1.43
PTPRF-213ENST00000481019 RBM12B-AS1Q9P1G2 102 aa6.11□□□□□ -1.43
PTPRF-213ENST00000481019 FAM236DA0A1B0GTK5 79 aa6.1□□□□□ -1.43
PTPRF-213ENST00000481019 FAM236CP0DP71 79 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 214.7 ms