RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 A0A0C4DFX4 3053 aa-1.17□□□□□ -2.6
CCDC88A-212ENST00000474059 MRPL33O75394 65 aaKnown RBP-1.17□□□□□ -2.6
CCDC88A-212ENST00000474059 DNAH2Q9P225 4427 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 ABCC1P33527 1531 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 S100A13Q99584 98 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 KCNQ1DNQ9H478 68 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 MGAM2Q2M2H8 2515 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 NRAPQ86VF7 1730 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 WDR87Q6ZQQ6 2873 aa-1.18□□□□□ -2.6
CCDC88A-212ENST00000474059 UBL5Q9BZL1 73 aa-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 CFAP74Q9C0B2 1584 aa-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 LRRK2Q5S007 2527 aa-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 ERVK-7P63135 1459 aa-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 RALGAPBQ86X10 1494 aa-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 CD163L1Q9NR16 1453 aa-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 RANBP2P49792 3224 aaKnown RBP-1.19□□□□□ -2.6
CCDC88A-212ENST00000474059 CEP290O15078 2479 aa-1.2□□□□□ -2.6
CCDC88A-212ENST00000474059 TOGARAM1Q9Y4F4 1720 aa-1.2□□□□□ -2.6
CCDC88A-212ENST00000474059 UTP20O75691 2785 aaKnown RBP-1.2□□□□□ -2.6
CCDC88A-212ENST00000474059 NBEAL2Q6ZNJ1 2754 aa-1.2□□□□□ -2.6
CCDC88A-212ENST00000474059 LAMA3Q16787 3333 aa-1.2□□□□□ -2.6
CCDC88A-212ENST00000474059 INO80Q9ULG1 1556 aaPredicted RBP-1.21□□□□□ -2.6
CCDC88A-212ENST00000474059 MT1HP80294 61 aa-1.21□□□□□ -2.6
CCDC88A-212ENST00000474059 BVES-AS1Q5T3Y7 98 aa-1.21□□□□□ -2.6
CCDC88A-212ENST00000474059 KIF1AQ12756 1690 aa-1.21□□□□□ -2.6
CCDC88A-212ENST00000474059 NHSQ6T4R5 1651 aa-1.21□□□□□ -2.6
CCDC88A-212ENST00000474059 ACACBO00763 2458 aa-1.22□□□□□ -2.6
CCDC88A-212ENST00000474059 PKD1L2Q7Z442 2459 aa-1.22□□□□□ -2.6
CCDC88A-212ENST00000474059 FAM186AA6NE01 2351 aa-1.22□□□□□ -2.6
CCDC88A-212ENST00000474059 CRIP1P50238 77 aa-1.22□□□□□ -2.6
CCDC88A-212ENST00000474059 KRTAP19-5Q3LI72 72 aa-1.22□□□□□ -2.6
CCDC88A-212ENST00000474059 CCDC18Q5T9S5 1454 aa-1.23□□□□□ -2.61
CCDC88A-212ENST00000474059 WT1-ASQ06250 92 aa-1.23□□□□□ -2.61
CCDC88A-212ENST00000474059 LMTK2Q8IWU2 1503 aa-1.24□□□□□ -2.61
CCDC88A-212ENST00000474059 RIF1Q5UIP0 2472 aaKnown RBP-1.24□□□□□ -2.61
CCDC88A-212ENST00000474059 DNAH8Q96JB1 4490 aa-1.24□□□□□ -2.61
CCDC88A-212ENST00000474059 SMARCA2P51531 1590 aa-1.25□□□□□ -2.61
CCDC88A-212ENST00000474059 DNHD1Q96M86 4753 aa-1.25□□□□□ -2.61
CCDC88A-212ENST00000474059 LRRIQ1Q96JM4 1722 aa-1.25□□□□□ -2.61
CCDC88A-212ENST00000474059 RELNP78509 3460 aa-1.25□□□□□ -2.61
CCDC88A-212ENST00000474059 CCDC168Q8NDH2 2452 aa-1.26□□□□□ -2.61
CCDC88A-212ENST00000474059 RPS27P42677 84 aaKnown RBP-1.26□□□□□ -2.61
CCDC88A-212ENST00000474059 DEFB1P60022 68 aa-1.26□□□□□ -2.61
CCDC88A-212ENST00000474059 ENHOQ6UWT2 76 aa-1.26□□□□□ -2.61
CCDC88A-212ENST00000474059 RPS27LQ71UM5 84 aaKnown RBP-1.26□□□□□ -2.61
CCDC88A-212ENST00000474059 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.26□□□□□ -2.61
CCDC88A-212ENST00000474059 ABCA8O94911 1581 aa-1.29□□□□□ -2.62
CCDC88A-212ENST00000474059 ETDCA0A1B0GVM5 59 aa-1.29□□□□□ -2.62
CCDC88A-212ENST00000474059 MINOS1Q5TGZ0 78 aa-1.29□□□□□ -2.62
CCDC88A-212ENST00000474059 C18orf32Q8TCD1 76 aa-1.29□□□□□ -2.62
CCDC88A-212ENST00000474059 CELSR3Q9NYQ7 3312 aa-1.3□□□□□ -2.62
CCDC88A-212ENST00000474059 ANKARQ7Z5J8 1434 aa-1.3□□□□□ -2.62
CCDC88A-212ENST00000474059 LY75O60449 1722 aa-1.3□□□□□ -2.62
CCDC88A-212ENST00000474059 BPTFQ12830 3046 aa-1.3□□□□□ -2.62
CCDC88A-212ENST00000474059 IGLV5-48A0A075B6I7 105 aa-1.31□□□□□ -2.62
CCDC88A-212ENST00000474059 H3BVH4 76 aa-1.31□□□□□ -2.62
CCDC88A-212ENST00000474059 CMYA5Q8N3K9 4069 aa-1.31□□□□□ -2.62
CCDC88A-212ENST00000474059 MYO5CQ9NQX4 1742 aa-1.32□□□□□ -2.62
CCDC88A-212ENST00000474059 SPENQ96T58 3664 aaKnown RBP-1.32□□□□□ -2.62
CCDC88A-212ENST00000474059 MMP24-AS1A0A0U1RRL7 71 aa-1.32□□□□□ -2.62
CCDC88A-212ENST00000474059 C3P01024 1663 aa-1.33□□□□□ -2.62
CCDC88A-212ENST00000474059 TEX15Q9BXT5 2789 aa-1.33□□□□□ -2.62
CCDC88A-212ENST00000474059 RRBP1Q9P2E9 1410 aaKnown RBP-1.33□□□□□ -2.62
CCDC88A-212ENST00000474059 TNP1P09430 55 aa-1.34□□□□□ -2.62
CCDC88A-212ENST00000474059 DNAH7Q8WXX0 4024 aa-1.35□□□□□ -2.63
CCDC88A-212ENST00000474059 NCBP2-AS2Q69YL0 99 aa-1.35□□□□□ -2.63
CCDC88A-212ENST00000474059 C6orf48Q9UBA6 75 aa-1.35□□□□□ -2.63
CCDC88A-212ENST00000474059 DIP2AQ14689 1571 aa-1.35□□□□□ -2.63
CCDC88A-212ENST00000474059 ABCA13Q86UQ4 5058 aa-1.35□□□□□ -2.63
CCDC88A-212ENST00000474059 SMR3BP02814 79 aaPredicted RBP-1.36□□□□□ -2.63
CCDC88A-212ENST00000474059 CLPSL2Q6UWE3 100 aa-1.36□□□□□ -2.63
CCDC88A-212ENST00000474059 MROH1Q8NDA8 1641 aa-1.37□□□□□ -2.63
CCDC88A-212ENST00000474059 CDC42BPGQ6DT37 1551 aa-1.37□□□□□ -2.63
CCDC88A-212ENST00000474059 H3BUA1 57 aa-1.37□□□□□ -2.63
CCDC88A-212ENST00000474059 FCER1GP30273 86 aa-1.37□□□□□ -2.63
CCDC88A-212ENST00000474059 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.37□□□□□ -2.63
CCDC88A-212ENST00000474059 CDC42BPAQ5VT25 1732 aa-1.37□□□□□ -2.63
CCDC88A-212ENST00000474059 FRYQ5TBA9 3013 aa-1.38□□□□□ -2.63
CCDC88A-212ENST00000474059 ABCC6O95255 1503 aa-1.38□□□□□ -2.63
CCDC88A-212ENST00000474059 DEFB114Q30KQ6 69 aa-1.38□□□□□ -2.63
CCDC88A-212ENST00000474059 COL12A1Q99715 3063 aa-1.38□□□□□ -2.63
CCDC88A-212ENST00000474059 SFTA3P0C7M3 94 aa-1.39□□□□□ -2.63
CCDC88A-212ENST00000474059 SPTBN5Q9NRC6 3674 aaKnown RBP-1.39□□□□□ -2.63
CCDC88A-212ENST00000474059 TLN2Q9Y4G6 2542 aa-1.4□□□□□ -2.63
CCDC88A-212ENST00000474059 KRTAP8-1Q8IUC2 63 aa-1.4□□□□□ -2.63
CCDC88A-212ENST00000474059 NOP10Q9NPE3 64 aaKnown RBP-1.4□□□□□ -2.63
CCDC88A-212ENST00000474059 C5orf42Q9H799 3197 aa-1.4□□□□□ -2.63
CCDC88A-212ENST00000474059 IQGAP3Q86VI3 1631 aa-1.4□□□□□ -2.63
CCDC88A-212ENST00000474059 MT1HL1P0DM35 61 aa-1.41□□□□□ -2.64
CCDC88A-212ENST00000474059 ASXL1Q8IXJ9 1541 aa-1.41□□□□□ -2.64
CCDC88A-212ENST00000474059 DYNC1H1Q14204 4646 aaKnown RBP-1.41□□□□□ -2.64
CCDC88A-212ENST00000474059 DNMBPQ6XZF7 1577 aa-1.42□□□□□ -2.64
CCDC88A-212ENST00000474059 ATXN8Q156A1 80 aa-1.42□□□□□ -2.64
CCDC88A-212ENST00000474059 CLASP1Q7Z460 1538 aa-1.43□□□□□ -2.64
CCDC88A-212ENST00000474059 MT1XP80297 61 aa-1.43□□□□□ -2.64
CCDC88A-212ENST00000474059 ITPR1Q14643 2758 aa-1.43□□□□□ -2.64
CCDC88A-212ENST00000474059 ABCA9Q8IUA7 1624 aa-1.44□□□□□ -2.64
CCDC88A-212ENST00000474059 HILPDAQ9Y5L2 63 aa-1.44□□□□□ -2.64
CCDC88A-212ENST00000474059 MAST1Q9Y2H9 1570 aa-1.44□□□□□ -2.64
CCDC88A-212ENST00000474059 COL6A5A8TX70 2615 aa-1.46□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms