RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 A0A087X002 238 aa3.66□□□□□ -1.82
HERC4-209ENST00000473533 PSORS1C2Q9UIG4 136 aa3.66□□□□□ -1.82
HERC4-209ENST00000473533 RTL8CO15255 209 aa3.65□□□□□ -1.83
HERC4-209ENST00000473533 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.65□□□□□ -1.83
HERC4-209ENST00000473533 DMAC1Q96GE9 116 aa3.64□□□□□ -1.83
HERC4-209ENST00000473533 ANK2Q01484 3957 aa3.63□□□□□ -1.83
HERC4-209ENST00000473533 PANO1I0J062 215 aa3.63□□□□□ -1.83
HERC4-209ENST00000473533 IGLV7-43P04211 117 aa3.63□□□□□ -1.83
HERC4-209ENST00000473533 LINC00313P59037 77 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 SPINK6Q6UWN8 80 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 RBM12B-AS1Q9P1G2 102 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 TGP01266 2768 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 DNAH1Q9P2D7 4330 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 A0A1B0GU69 56 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 KRTAP13-3Q3SY46 172 aa3.62□□□□□ -1.83
HERC4-209ENST00000473533 CIRBP-AS1Q8TBR5 109 aa3.61□□□□□ -1.83
HERC4-209ENST00000473533 A8MU10 97 aa3.61□□□□□ -1.83
HERC4-209ENST00000473533 SPINK7P58062 85 aa3.61□□□□□ -1.83
HERC4-209ENST00000473533 PRR26Q8N8Z3 221 aa3.61□□□□□ -1.83
HERC4-209ENST00000473533 IGKV2-30P06310 120 aa3.59□□□□□ -1.83
HERC4-209ENST00000473533 Q5W150 140 aa3.59□□□□□ -1.83
HERC4-209ENST00000473533 C1orf134Q5TEV5 83 aa3.59□□□□□ -1.84
HERC4-209ENST00000473533 UQCR11O14957 56 aa3.58□□□□□ -1.84
HERC4-209ENST00000473533 NOTCH2NLQ7Z3S9 236 aa3.58□□□□□ -1.84
HERC4-209ENST00000473533 SPATA8Q6RVD6 105 aa3.57□□□□□ -1.84
HERC4-209ENST00000473533 DNAH3Q8TD57 4116 aa3.57□□□□□ -1.84
HERC4-209ENST00000473533 MEGF8Q7Z7M0 2845 aa3.57□□□□□ -1.84
HERC4-209ENST00000473533 PLA2G1BP04054 148 aaKnown RBP3.56□□□□□ -1.84
HERC4-209ENST00000473533 MIR22HGQ0VDD5 57 aa3.56□□□□□ -1.84
HERC4-209ENST00000473533 ANAPC11Q9NYG5 84 aa3.56□□□□□ -1.84
HERC4-209ENST00000473533 DMBT1Q9UGM3 2413 aaPredicted RBP3.55□□□□□ -1.84
HERC4-209ENST00000473533 C4orf48Q5BLP8 95 aa3.55□□□□□ -1.84
HERC4-209ENST00000473533 HUWE1Q7Z6Z7 4374 aaKnown RBP3.54□□□□□ -1.84
HERC4-209ENST00000473533 LYSTQ99698 3801 aa3.52□□□□□ -1.85
HERC4-209ENST00000473533 IGKV2D-30A0A075B6S6 120 aa3.52□□□□□ -1.85
HERC4-209ENST00000473533 CMYA5Q8N3K9 4069 aa3.52□□□□□ -1.85
HERC4-209ENST00000473533 PRKDCP78527 4128 aaKnown RBP3.52□□□□□ -1.85
HERC4-209ENST00000473533 RETNLBQ9BQ08 111 aa3.52□□□□□ -1.85
HERC4-209ENST00000473533 SPINK1P00995 79 aa3.51□□□□□ -1.85
HERC4-209ENST00000473533 RPS29P62273 56 aaKnown RBP3.5□□□□□ -1.85
HERC4-209ENST00000473533 KRTAP16-1A8MUX0 517 aa3.5□□□□□ -1.85
HERC4-209ENST00000473533 DNAH10Q8IVF4 4471 aa3.49□□□□□ -1.85
HERC4-209ENST00000473533 DYNC2H1Q8NCM8 4307 aaKnown RBP3.48□□□□□ -1.85
HERC4-209ENST00000473533 LINC01554Q52M75 96 aa3.47□□□□□ -1.85
HERC4-209ENST00000473533 KRTAP13-2Q52LG2 175 aa3.47□□□□□ -1.85
HERC4-209ENST00000473533 FLG2Q5D862 2391 aaPredicted RBP3.47□□□□□ -1.85
HERC4-209ENST00000473533 LY6G6CO95867 125 aa3.46□□□□□ -1.86
HERC4-209ENST00000473533 Q6ZSA8 131 aa3.46□□□□□ -1.86
HERC4-209ENST00000473533 TYMSOSQ8TAI1 123 aa3.46□□□□□ -1.86
HERC4-209ENST00000473533 KMT2CQ8NEZ4 4911 aaKnown RBP3.46□□□□□ -1.86
HERC4-209ENST00000473533 RYR3Q15413 4870 aa3.44□□□□□ -1.86
HERC4-209ENST00000473533 ALMS1Q8TCU4 4167 aa3.43□□□□□ -1.86
HERC4-209ENST00000473533 K7ERS5 55 aa3.43□□□□□ -1.86
HERC4-209ENST00000473533 PRAC1Q96KF2 57 aa3.43□□□□□ -1.86
HERC4-209ENST00000473533 KRTAP1-4P0C5Y4 121 aa3.42□□□□□ -1.86
HERC4-209ENST00000473533 DNAH9Q9NYC9 4486 aa3.42□□□□□ -1.86
HERC4-209ENST00000473533 LINC00304Q8N9R0 145 aa3.42□□□□□ -1.86
HERC4-209ENST00000473533 KRTAP10-2P60368 255 aa3.41□□□□□ -1.86
HERC4-209ENST00000473533 VPS13DQ5THJ4 4388 aa3.39□□□□□ -1.87
HERC4-209ENST00000473533 KRTAP10-1P60331 282 aa3.39□□□□□ -1.87
HERC4-209ENST00000473533 DNAH17Q9UFH2 4485 aa3.38□□□□□ -1.87
HERC4-209ENST00000473533 A0A1B0GU33 70 aa3.38□□□□□ -1.87
HERC4-209ENST00000473533 Q8N1X5 172 aa3.38□□□□□ -1.87
HERC4-209ENST00000473533 C20orf166-AS1Q96NR2 134 aa3.38□□□□□ -1.87
HERC4-209ENST00000473533 A8MUU9 505 aa3.37□□□□□ -1.87
HERC4-209ENST00000473533 CSAG1Q6PB30 78 aa3.37□□□□□ -1.87
HERC4-209ENST00000473533 ADM2Q7Z4H4 148 aa3.37□□□□□ -1.87
HERC4-209ENST00000473533 H1FX-AS1Q4G0G2 97 aa3.36□□□□□ -1.87
HERC4-209ENST00000473533 DNAH8Q96JB1 4490 aa3.36□□□□□ -1.87
HERC4-209ENST00000473533 PLECQ15149 4684 aaKnown RBP3.35□□□□□ -1.87
HERC4-209ENST00000473533 KRTAP25-1Q3LHN0 102 aa3.33□□□□□ -1.88
HERC4-209ENST00000473533 H0YAA0 97 aa3.32□□□□□ -1.88
HERC4-209ENST00000473533 EPPK1P58107 5090 aaKnown RBP3.32□□□□□ -1.88
HERC4-209ENST00000473533 COX6B2Q6YFQ2 88 aa3.32□□□□□ -1.88
HERC4-209ENST00000473533 DNAH6Q9C0G6 4158 aa3.32□□□□□ -1.88
HERC4-209ENST00000473533 FRAS1Q86XX4 4008 aa3.31□□□□□ -1.88
HERC4-209ENST00000473533 DNAH7Q8WXX0 4024 aa3.31□□□□□ -1.88
HERC4-209ENST00000473533 HECTD4Q9Y4D8 3996 aa3.31□□□□□ -1.88
HERC4-209ENST00000473533 C9orf92A6NGG3 77 aa3.28□□□□□ -1.88
HERC4-209ENST00000473533 SACSQ9NZJ4 4579 aa3.28□□□□□ -1.88
HERC4-209ENST00000473533 DNAH2Q9P225 4427 aa3.28□□□□□ -1.88
HERC4-209ENST00000473533 RYR2Q92736 4967 aa3.27□□□□□ -1.89
HERC4-209ENST00000473533 STARD9Q9P2P6 4700 aa3.27□□□□□ -1.89
HERC4-209ENST00000473533 LCE2DQ5TA82 110 aaPredicted RBP3.27□□□□□ -1.89
HERC4-209ENST00000473533 ROMO1P60602 79 aa3.26□□□□□ -1.89
HERC4-209ENST00000473533 HYDINQ4G0P3 5121 aa3.26□□□□□ -1.89
HERC4-209ENST00000473533 KRTAP3-1Q9BYR8 98 aa3.26□□□□□ -1.89
HERC4-209ENST00000473533 RPL37P61927 97 aaKnown RBP3.25□□□□□ -1.89
HERC4-209ENST00000473533 CRIPTQ9P021 101 aa3.25□□□□□ -1.89
HERC4-209ENST00000473533 KMT2AQ03164 3969 aa3.24□□□□□ -1.89
HERC4-209ENST00000473533 BIRC6Q9NR09 4857 aa3.24□□□□□ -1.89
HERC4-209ENST00000473533 H3BS24 57 aa3.23□□□□□ -1.89
HERC4-209ENST00000473533 DNAH11Q96DT5 4516 aa3.23□□□□□ -1.89
HERC4-209ENST00000473533 SMR3BP02814 79 aaPredicted RBP3.22□□□□□ -1.89
HERC4-209ENST00000473533 DNAH5Q8TE73 4624 aa3.2□□□□□ -1.9
HERC4-209ENST00000473533 S4R3F8 94 aa3.2□□□□□ -1.9
HERC4-209ENST00000473533 KRTAP17-1Q9BYP8 105 aa3.19□□□□□ -1.9
HERC4-209ENST00000473533 KRTAP10-4P60372 401 aaPredicted RBP3.17□□□□□ -1.9
HERC4-209ENST00000473533 A0A1B0GVY2 172 aa3.16□□□□□ -1.9
HERC4-209ENST00000473533 RYR1P21817 5038 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms