RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 KRTAP7-1Q8IUC3 87 aa2.59□□□□□ -1.99
VPS50-210ENST00000471188 ZNF469Q96JG9 3925 aaPredicted RBP2.59□□□□□ -2
VPS50-210ENST00000471188 KRTAP23-1A1A580 65 aa2.59□□□□□ -2
VPS50-210ENST00000471188 K7EIL1 84 aa2.59□□□□□ -2
VPS50-210ENST00000471188 FLG2Q5D862 2391 aaPredicted RBP2.58□□□□□ -2
VPS50-210ENST00000471188 TEP1Q99973 2627 aaKnown RBP2.58□□□□□ -2
VPS50-210ENST00000471188 HIVEP1P15822 2718 aa2.58□□□□□ -2
VPS50-210ENST00000471188 IGLV9-49A0A0B4J1Y8 123 aa2.58□□□□□ -2
VPS50-210ENST00000471188 VWFP04275 2813 aa2.58□□□□□ -2
VPS50-210ENST00000471188 SPATA8Q6RVD6 105 aa2.58□□□□□ -2
VPS50-210ENST00000471188 TLX1NBP0CAT3 122 aa2.58□□□□□ -2
VPS50-210ENST00000471188 CASC10Q5T4H9 136 aa2.58□□□□□ -2
VPS50-210ENST00000471188 FBN1P35555 2871 aaKnown RBP2.57□□□□□ -2
VPS50-210ENST00000471188 MRPL34Q9BQ48 92 aaKnown RBP2.57□□□□□ -2
VPS50-210ENST00000471188 CSMD3Q7Z407 3707 aa2.57□□□□□ -2
VPS50-210ENST00000471188 A0A087X002 238 aa2.57□□□□□ -2
VPS50-210ENST00000471188 KRTAP10-9P60411 292 aa2.57□□□□□ -2
VPS50-210ENST00000471188 SPINK6Q6UWN8 80 aa2.57□□□□□ -2
VPS50-210ENST00000471188 LINC01556Q5JQF7 62 aa2.56□□□□□ -2
VPS50-210ENST00000471188 TENM2Q9NT68 2774 aa2.56□□□□□ -2
VPS50-210ENST00000471188 KRTAP15-1Q3LI76 137 aa2.56□□□□□ -2
VPS50-210ENST00000471188 ROMO1P60602 79 aa2.55□□□□□ -2
VPS50-210ENST00000471188 A0A1B0GVX0 72 aa2.55□□□□□ -2
VPS50-210ENST00000471188 DEFB113Q30KQ7 82 aa2.55□□□□□ -2
VPS50-210ENST00000471188 FASNP49327 2511 aaKnown RBP2.54□□□□□ -2
VPS50-210ENST00000471188 ATRQ13535 2644 aa2.54□□□□□ -2
VPS50-210ENST00000471188 NOTCH2NLQ7Z3S9 236 aa2.54□□□□□ -2
VPS50-210ENST00000471188 DYNC2H1Q8NCM8 4307 aaKnown RBP2.54□□□□□ -2
VPS50-210ENST00000471188 COL7A1Q02388 2944 aa2.54□□□□□ -2
VPS50-210ENST00000471188 ZNF861PO60384 105 aa2.54□□□□□ -2
VPS50-210ENST00000471188 Q5W150 140 aa2.54□□□□□ -2
VPS50-210ENST00000471188 HECTD1Q9ULT8 2610 aa2.53□□□□□ -2
VPS50-210ENST00000471188 SPINK1P00995 79 aa2.53□□□□□ -2
VPS50-210ENST00000471188 CHTF8P0CG12 524 aa2.53□□□□□ -2
VPS50-210ENST00000471188 CRIPTQ9P021 101 aa2.53□□□□□ -2
VPS50-210ENST00000471188 NOTCH1P46531 2555 aa2.53□□□□□ -2
VPS50-210ENST00000471188 COL6A5A8TX70 2615 aa2.52□□□□□ -2.01
VPS50-210ENST00000471188 TRRAPQ9Y4A5 3859 aa2.52□□□□□ -2.01
VPS50-210ENST00000471188 H3BNG1 76 aa2.52□□□□□ -2.01
VPS50-210ENST00000471188 DMAC1Q96GE9 116 aa2.52□□□□□ -2.01
VPS50-210ENST00000471188 Q96NJ1 140 aa2.52□□□□□ -2.01
VPS50-210ENST00000471188 KRTAP10-3P60369 221 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 KRTAP25-1Q3LHN0 102 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 NBEAL1Q6ZS30 2694 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 DNAH7Q8WXX0 4024 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 DNAH10OSP0CZ25 163 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 SPRR1BP22528 89 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 KRTAP11-1Q8IUC1 163 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 DNAH6Q9C0G6 4158 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 FLNBO75369 2602 aaKnown RBP2.51□□□□□ -2.01
VPS50-210ENST00000471188 TENM3Q9P273 2699 aa2.51□□□□□ -2.01
VPS50-210ENST00000471188 DNAH1Q9P2D7 4330 aa2.5□□□□□ -2.01
VPS50-210ENST00000471188 SSBP3-AS1Q7Z2R9 100 aa2.5□□□□□ -2.01
VPS50-210ENST00000471188 IGKV2D-30A0A075B6S6 120 aa2.49□□□□□ -2.01
VPS50-210ENST00000471188 IGKV2-30P06310 120 aa2.49□□□□□ -2.01
VPS50-210ENST00000471188 ANAPC11Q9NYG5 84 aa2.49□□□□□ -2.01
VPS50-210ENST00000471188 A8MUU9 505 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 IGLV7-43P04211 117 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 LYSTQ99698 3801 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 TENM1Q9UKZ4 2725 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 IGLV5-52A0A0A0MRZ9 124 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 SPINT4Q6UDR6 99 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 INAFM1C9JVW0 142 aa2.48□□□□□ -2.01
VPS50-210ENST00000471188 P0C880 135 aa2.47□□□□□ -2.01
VPS50-210ENST00000471188 ITPR2Q14571 2701 aa2.47□□□□□ -2.01
VPS50-210ENST00000471188 NSD1Q96L73 2696 aaPredicted RBP2.47□□□□□ -2.01
VPS50-210ENST00000471188 ALMS1Q8TCU4 4167 aa2.47□□□□□ -2.01
VPS50-210ENST00000471188 DMBT1Q9UGM3 2413 aaPredicted RBP2.47□□□□□ -2.01
VPS50-210ENST00000471188 LINC00304Q8N9R0 145 aa2.46□□□□□ -2.01
VPS50-210ENST00000471188 CIRBP-AS1Q8TBR5 109 aa2.46□□□□□ -2.01
VPS50-210ENST00000471188 MAST4O15021 2626 aa2.46□□□□□ -2.02
VPS50-210ENST00000471188 A0A0A0MQY5 61 aa2.46□□□□□ -2.02
VPS50-210ENST00000471188 SMR3AQ99954 134 aa2.46□□□□□ -2.02
VPS50-210ENST00000471188 KRTAP13-3Q3SY46 172 aa2.45□□□□□ -2.02
VPS50-210ENST00000471188 C14orf177Q52M58 125 aa2.45□□□□□ -2.02
VPS50-210ENST00000471188 LINC00483Q53H64 154 aa2.45□□□□□ -2.02
VPS50-210ENST00000471188 K7ERS5 55 aa2.44□□□□□ -2.02
VPS50-210ENST00000471188 NDUFAF8A1L188 74 aa2.44□□□□□ -2.02
VPS50-210ENST00000471188 FBN3Q75N90 2809 aa2.44□□□□□ -2.02
VPS50-210ENST00000471188 DNAH10Q8IVF4 4471 aa2.44□□□□□ -2.02
VPS50-210ENST00000471188 LY6G6CO95867 125 aa2.43□□□□□ -2.02
VPS50-210ENST00000471188 UBE2DNLQ8IWF7 75 aa2.43□□□□□ -2.02
VPS50-210ENST00000471188 H0YAA0 97 aa2.43□□□□□ -2.02
VPS50-210ENST00000471188 PANO1I0J062 215 aa2.42□□□□□ -2.02
VPS50-210ENST00000471188 Q6ZSA8 131 aa2.42□□□□□ -2.02
VPS50-210ENST00000471188 STAB2Q8WWQ8 2551 aa2.42□□□□□ -2.02
VPS50-210ENST00000471188 TGP01266 2768 aa2.42□□□□□ -2.02
VPS50-210ENST00000471188 A0A1B0GU33 70 aa2.42□□□□□ -2.02
VPS50-210ENST00000471188 PRKDCP78527 4128 aaKnown RBP2.42□□□□□ -2.02
VPS50-210ENST00000471188 STAB1Q9NY15 2570 aa2.42□□□□□ -2.02
VPS50-210ENST00000471188 KRTAP1-5Q9BYS1 174 aa2.41□□□□□ -2.02
VPS50-210ENST00000471188 PSORS1C2Q9UIG4 136 aa2.41□□□□□ -2.02
VPS50-210ENST00000471188 HECTD4Q9Y4D8 3996 aa2.41□□□□□ -2.02
VPS50-210ENST00000471188 KRTAP16-1A8MUX0 517 aa2.41□□□□□ -2.02
VPS50-210ENST00000471188 KRTAP13-1Q8IUC0 172 aa2.41□□□□□ -2.02
VPS50-210ENST00000471188 KRTAP10-11P60412 298 aa2.4□□□□□ -2.02
VPS50-210ENST00000471188 MEGF8Q7Z7M0 2845 aa2.4□□□□□ -2.03
VPS50-210ENST00000471188 C20orf166-AS1Q96NR2 134 aa2.4□□□□□ -2.03
VPS50-210ENST00000471188 TYMSOSQ8TAI1 123 aa2.39□□□□□ -2.03
VPS50-210ENST00000471188 FAT2Q9NYQ8 4349 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms