RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ATP5EP56381 51 aaPredicted RBP4.48□□□□□ -1.69
COL6A3-208ENST00000468792 CASC2Q6XLA1 102 aa4.48□□□□□ -1.69
COL6A3-208ENST00000468792 ANAPC11Q9NYG5 84 aa4.48□□□□□ -1.69
COL6A3-208ENST00000468792 MMP24-AS1A0A0U1RRL7 71 aa4.47□□□□□ -1.69
COL6A3-208ENST00000468792 KRTAP1-4P0C5Y4 121 aa4.47□□□□□ -1.69
COL6A3-208ENST00000468792 SPINK6Q6UWN8 80 aa4.47□□□□□ -1.69
COL6A3-208ENST00000468792 ZCCHC13Q8WW36 166 aaKnown RBP4.47□□□□□ -1.69
COL6A3-208ENST00000468792 A0A1B0GVX0 72 aa4.46□□□□□ -1.7
COL6A3-208ENST00000468792 TP53AIP1Q9HCN2 124 aa4.46□□□□□ -1.7
COL6A3-208ENST00000468792 PKHD1L1Q86WI1 4243 aa4.45□□□□□ -1.7
COL6A3-208ENST00000468792 hDV103S1A0JD37 113 aa4.45□□□□□ -1.7
COL6A3-208ENST00000468792 CDK2AP2O75956 126 aa4.45□□□□□ -1.7
COL6A3-208ENST00000468792 KRTAP13-2Q52LG2 175 aa4.45□□□□□ -1.7
COL6A3-208ENST00000468792 SNURFQ9Y675 71 aa4.45□□□□□ -1.7
COL6A3-208ENST00000468792 A0A087X002 238 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 FAM236DA0A1B0GTK5 79 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 FAM236CP0DP71 79 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 MP68P56378 58 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 HRCT1Q6UXD1 115 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 WFDC13Q8IUB5 93 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 C8orf17Q9NRJ1 99 aa4.44□□□□□ -1.7
COL6A3-208ENST00000468792 C8orf87E5RJ46 101 aa4.43□□□□□ -1.7
COL6A3-208ENST00000468792 RPS29P62273 56 aaKnown RBP4.43□□□□□ -1.7
COL6A3-208ENST00000468792 LIMD2Q9BT23 127 aa4.42□□□□□ -1.7
COL6A3-208ENST00000468792 SPINK1P00995 79 aa4.41□□□□□ -1.7
COL6A3-208ENST00000468792 SPAG11AQ6PDA7 123 aa4.41□□□□□ -1.7
COL6A3-208ENST00000468792 MRPL34Q9BQ48 92 aaKnown RBP4.41□□□□□ -1.7
COL6A3-208ENST00000468792 SERP1Q9Y6X1 66 aa4.41□□□□□ -1.7
COL6A3-208ENST00000468792 RYR3Q15413 4870 aa4.4□□□□□ -1.71
COL6A3-208ENST00000468792 IGHV6-1A0A0B4J1U7 121 aa4.39□□□□□ -1.71
COL6A3-208ENST00000468792 TRAV22A0A0B4J277 110 aa4.39□□□□□ -1.71
COL6A3-208ENST00000468792 KRTAP10-4P60372 401 aaPredicted RBP4.39□□□□□ -1.71
COL6A3-208ENST00000468792 C1orf195Q5TG92 126 aa4.39□□□□□ -1.71
COL6A3-208ENST00000468792 H0Y9P7 68 aa4.38□□□□□ -1.71
COL6A3-208ENST00000468792 SPANXA2-OT1Q8N9U9 137 aa4.38□□□□□ -1.71
COL6A3-208ENST00000468792 TYMSOSQ8TAI1 123 aa4.38□□□□□ -1.71
COL6A3-208ENST00000468792 RYR1P21817 5038 aa4.37□□□□□ -1.71
COL6A3-208ENST00000468792 CYP4F30PQ9H0H9 118 aa4.37□□□□□ -1.71
COL6A3-208ENST00000468792 HSPG2P98160 4391 aa4.37□□□□□ -1.71
COL6A3-208ENST00000468792 KRTAP23-1A1A580 65 aa4.36□□□□□ -1.71
COL6A3-208ENST00000468792 LINC00208Q96KT6 92 aa4.36□□□□□ -1.71
COL6A3-208ENST00000468792 LINC00313P59037 77 aa4.35□□□□□ -1.71
COL6A3-208ENST00000468792 Q8N9P0 234 aaPredicted RBP4.35□□□□□ -1.71
COL6A3-208ENST00000468792 C1orf64Q8NEQ6 169 aa4.35□□□□□ -1.71
COL6A3-208ENST00000468792 KRTAP19-4Q3LI73 84 aa4.34□□□□□ -1.71
COL6A3-208ENST00000468792 NOTCH2NLQ7Z3S9 236 aa4.34□□□□□ -1.71
COL6A3-208ENST00000468792 LINC00304Q8N9R0 145 aa4.34□□□□□ -1.71
COL6A3-208ENST00000468792 OXTP01178 125 aa4.33□□□□□ -1.72
COL6A3-208ENST00000468792 KRTAP13-3Q3SY46 172 aa4.33□□□□□ -1.72
COL6A3-208ENST00000468792 XP32Q5T750 250 aa4.33□□□□□ -1.72
COL6A3-208ENST00000468792 FAT3Q8TDW7 4589 aa4.33□□□□□ -1.72
COL6A3-208ENST00000468792 SMIM26A0A096LP01 95 aa4.32□□□□□ -1.72
COL6A3-208ENST00000468792 LOC101927531A0A1B0GV80 90 aa4.32□□□□□ -1.72
COL6A3-208ENST00000468792 SMR3BP02814 79 aaPredicted RBP4.32□□□□□ -1.72
COL6A3-208ENST00000468792 TNXBP22105 4242 aa4.32□□□□□ -1.72
COL6A3-208ENST00000468792 IGLV7-46A0A075B6I9 117 aa4.31□□□□□ -1.72
COL6A3-208ENST00000468792 KRTAP16-1A8MUX0 517 aa4.31□□□□□ -1.72
COL6A3-208ENST00000468792 NDUFS5O43920 106 aa4.31□□□□□ -1.72
COL6A3-208ENST00000468792 PRR26Q8N8Z3 221 aa4.31□□□□□ -1.72
COL6A3-208ENST00000468792 Q5W150 140 aa4.27□□□□□ -1.73
COL6A3-208ENST00000468792 LRP1Q07954 4544 aaKnown RBP4.25□□□□□ -1.73
COL6A3-208ENST00000468792 KRTAP10-8P60410 259 aa4.25□□□□□ -1.73
COL6A3-208ENST00000468792 FP248Q71RG6 208 aaPredicted RBP4.24□□□□□ -1.73
COL6A3-208ENST00000468792 IGKV2-30P06310 120 aa4.23□□□□□ -1.73
COL6A3-208ENST00000468792 KIAA1109Q2LD37 5005 aa4.23□□□□□ -1.73
COL6A3-208ENST00000468792 Q1T7F1 81 aa4.22□□□□□ -1.73
COL6A3-208ENST00000468792 Q5VSD8 79 aa4.22□□□□□ -1.73
COL6A3-208ENST00000468792 C20orf166-AS1Q96NR2 134 aa4.22□□□□□ -1.73
COL6A3-208ENST00000468792 A8MUU9 505 aa4.21□□□□□ -1.74
COL6A3-208ENST00000468792 PCOTHQ58A44 107 aa4.21□□□□□ -1.74
COL6A3-208ENST00000468792 V9GYY9 64 aa4.21□□□□□ -1.74
COL6A3-208ENST00000468792 EPPK1P58107 5090 aaKnown RBP4.2□□□□□ -1.74
COL6A3-208ENST00000468792 FLG2Q5D862 2391 aaPredicted RBP4.19□□□□□ -1.74
COL6A3-208ENST00000468792 PRR4Q16378 134 aa4.19□□□□□ -1.74
COL6A3-208ENST00000468792 C4orf26Q17RF5 130 aa4.18□□□□□ -1.74
COL6A3-208ENST00000468792 HRES1P13985 223 aa4.17□□□□□ -1.74
COL6A3-208ENST00000468792 ACYP2P14621 99 aa4.17□□□□□ -1.74
COL6A3-208ENST00000468792 COA5Q86WW8 74 aa4.17□□□□□ -1.74
COL6A3-208ENST00000468792 Q8N1X5 172 aa4.17□□□□□ -1.74
COL6A3-208ENST00000468792 DMAC1Q96GE9 116 aa4.17□□□□□ -1.74
COL6A3-208ENST00000468792 Q75L30 129 aa4.16□□□□□ -1.74
COL6A3-208ENST00000468792 MYCBP2O75592 4640 aa4.15□□□□□ -1.74
COL6A3-208ENST00000468792 C7orf65Q6ZTY9 151 aa4.15□□□□□ -1.75
COL6A3-208ENST00000468792 A8MUN3 132 aa4.13□□□□□ -1.75
COL6A3-208ENST00000468792 KRTAP3-1Q9BYR8 98 aa4.13□□□□□ -1.75
COL6A3-208ENST00000468792 IGKV2D-30A0A075B6S6 120 aa4.12□□□□□ -1.75
COL6A3-208ENST00000468792 MPLKIPQ8TAP9 179 aa4.12□□□□□ -1.75
COL6A3-208ENST00000468792 MT1HL1P0DM35 61 aa4.11□□□□□ -1.75
COL6A3-208ENST00000468792 RETNLBQ9BQ08 111 aa4.11□□□□□ -1.75
COL6A3-208ENST00000468792 KRTAP17-1Q9BYP8 105 aa4.11□□□□□ -1.75
COL6A3-208ENST00000468792 C9orf92A6NGG3 77 aa4.1□□□□□ -1.75
COL6A3-208ENST00000468792 LINC01558Q9Y6Z2 57 aa4.1□□□□□ -1.75
COL6A3-208ENST00000468792 KRTAP4-8Q9BYQ9 185 aa4.09□□□□□ -1.75
COL6A3-208ENST00000468792 DMBT1Q9UGM3 2413 aaPredicted RBP4.09□□□□□ -1.76
COL6A3-208ENST00000468792 HERC2O95714 4834 aa4.06□□□□□ -1.76
COL6A3-208ENST00000468792 RPL37P61927 97 aaKnown RBP4.06□□□□□ -1.76
COL6A3-208ENST00000468792 BIRC6Q9NR09 4857 aa4.06□□□□□ -1.76
COL6A3-208ENST00000468792 CHKB-CPT1BH3BT56 60 aa4.05□□□□□ -1.76
COL6A3-208ENST00000468792 SPINK7P58062 85 aa4.05□□□□□ -1.76
COL6A3-208ENST00000468792 Q5VV11 94 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms