RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 DEFB1P60022 68 aa-0.68□□□□□ -2.52
VPS13A-209ENST00000467124 ITPR1Q14643 2758 aa-0.68□□□□□ -2.52
VPS13A-209ENST00000467124 SPENQ96T58 3664 aaKnown RBP-0.68□□□□□ -2.52
VPS13A-209ENST00000467124 MTORP42345 2549 aa-0.68□□□□□ -2.52
VPS13A-209ENST00000467124 CCDC168Q8NDH2 2452 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 ACACAQ13085 2346 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 DCAF1Q9Y4B6 1507 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 PLXNC1O60486 1568 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 NBEAL2Q6ZNJ1 2754 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 LCE6AA0A183 80 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 SMR3BP02814 79 aaPredicted RBP-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 MT1BP07438 61 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 MT1MQ8N339 61 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 PLCH1Q4KWH8 1693 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 TRRAPQ9Y4A5 3859 aa-0.69□□□□□ -2.52
VPS13A-209ENST00000467124 MGAM2Q2M2H8 2515 aa-0.7□□□□□ -2.52
VPS13A-209ENST00000467124 MT1LQ93083 61 aa-0.7□□□□□ -2.52
VPS13A-209ENST00000467124 S4R3F8 94 aa-0.7□□□□□ -2.52
VPS13A-209ENST00000467124 ACACBO00763 2458 aa-0.7□□□□□ -2.52
VPS13A-209ENST00000467124 ADGRG4Q8IZF6 3080 aa-0.7□□□□□ -2.52
VPS13A-209ENST00000467124 RIF1Q5UIP0 2472 aaKnown RBP-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 RICTORQ6R327 1708 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 MT2AP02795 61 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 MT1EP04732 61 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 DEFB130BP0DP73 79 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 DEFB130AP0DP74 79 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 GCN1Q92616 2671 aaKnown RBP-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 PKD1L2Q7Z442 2459 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 LRRK2Q5S007 2527 aa-0.71□□□□□ -2.52
VPS13A-209ENST00000467124 WIZO95785 1651 aa-0.72□□□□□ -2.52
VPS13A-209ENST00000467124 FRYQ5TBA9 3013 aa-0.72□□□□□ -2.52
VPS13A-209ENST00000467124 DMXL2Q8TDJ6 3036 aa-0.72□□□□□ -2.52
VPS13A-209ENST00000467124 UTP20O75691 2785 aaKnown RBP-0.72□□□□□ -2.52
VPS13A-209ENST00000467124 IAPPP10997 89 aa-0.72□□□□□ -2.52
VPS13A-209ENST00000467124 ZFHX4Q86UP3 3567 aa-0.72□□□□□ -2.53
VPS13A-209ENST00000467124 DDX60LQ5H9U9 1706 aaKnown RBP-0.72□□□□□ -2.53
VPS13A-209ENST00000467124 MAP3K1Q13233 1512 aa-0.73□□□□□ -2.53
VPS13A-209ENST00000467124 CDC42BPGQ6DT37 1551 aa-0.73□□□□□ -2.53
VPS13A-209ENST00000467124 BPTFQ12830 3046 aa-0.73□□□□□ -2.53
VPS13A-209ENST00000467124 HMGA1P17096 107 aaKnown RBP-0.73□□□□□ -2.53
VPS13A-209ENST00000467124 DEFB110Q30KQ9 67 aa-0.73□□□□□ -2.53
VPS13A-209ENST00000467124 ATMQ13315 3056 aa-0.73□□□□□ -2.53
VPS13A-209ENST00000467124 MGAQ8IWI9 3026 aa-0.74□□□□□ -2.53
VPS13A-209ENST00000467124 CCDC88BA6NC98 1476 aa-0.74□□□□□ -2.53
VPS13A-209ENST00000467124 CFAP43Q8NDM7 1665 aa-0.75□□□□□ -2.53
VPS13A-209ENST00000467124 MYO15AQ9UKN7 3530 aa-0.75□□□□□ -2.53
VPS13A-209ENST00000467124 C18orf32Q8TCD1 76 aa-0.75□□□□□ -2.53
VPS13A-209ENST00000467124 ANKRD50Q9ULJ7 1429 aa-0.75□□□□□ -2.53
VPS13A-209ENST00000467124 KDM5DQ9BY66 1539 aa-0.75□□□□□ -2.53
VPS13A-209ENST00000467124 CEP295Q9C0D2 2601 aa-0.76□□□□□ -2.53
VPS13A-209ENST00000467124 H3BVH4 76 aa-0.76□□□□□ -2.53
VPS13A-209ENST00000467124 ABCC1P33527 1531 aa-0.76□□□□□ -2.53
VPS13A-209ENST00000467124 DEPDC5O75140 1603 aa-0.76□□□□□ -2.53
VPS13A-209ENST00000467124 FAM186AA6NE01 2351 aa-0.76□□□□□ -2.53
VPS13A-209ENST00000467124 CSMD2Q7Z408 3487 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 LRBAP50851 2863 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 CDC42BPAQ5VT25 1732 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 ARHGAP35Q9NRY4 1499 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 C9orf92A6NGG3 77 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 LYNX1G3V0Z9 82 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 CFAP46Q8IYW2 2715 aa-0.77□□□□□ -2.53
VPS13A-209ENST00000467124 BOD1L1Q8NFC6 3051 aa-0.78□□□□□ -2.53
VPS13A-209ENST00000467124 ITPR2Q14571 2701 aa-0.78□□□□□ -2.53
VPS13A-209ENST00000467124 FREM2Q5SZK8 3169 aa-0.78□□□□□ -2.53
VPS13A-209ENST00000467124 DEFB4AO15263 64 aa-0.78□□□□□ -2.53
VPS13A-209ENST00000467124 KRTAP8-1Q8IUC2 63 aa-0.78□□□□□ -2.53
VPS13A-209ENST00000467124 PRLHP81277 87 aa-0.79□□□□□ -2.54
VPS13A-209ENST00000467124 TLN2Q9Y4G6 2542 aa-0.79□□□□□ -2.54
VPS13A-209ENST00000467124 PRUNE2Q8WUY3 3088 aa-0.8□□□□□ -2.54
VPS13A-209ENST00000467124 MYO9AB2RTY4 2548 aa-0.8□□□□□ -2.54
VPS13A-209ENST00000467124 DEFB131BA0A096LNP1 70 aa-0.8□□□□□ -2.54
VPS13A-209ENST00000467124 DEFB106AQ8N104 65 aa-0.8□□□□□ -2.54
VPS13A-209ENST00000467124 ANKRD36CQ5JPF3 1778 aa-0.8□□□□□ -2.54
VPS13A-209ENST00000467124 SPEGQ15772 3267 aa-0.81□□□□□ -2.54
VPS13A-209ENST00000467124 MT1FP04733 61 aa-0.81□□□□□ -2.54
VPS13A-209ENST00000467124 ENHOQ6UWT2 76 aa-0.81□□□□□ -2.54
VPS13A-209ENST00000467124 CRYBG3Q68DQ2 2970 aa-0.81□□□□□ -2.54
VPS13A-209ENST00000467124 DMDP11532 3685 aa-0.82□□□□□ -2.54
VPS13A-209ENST00000467124 DCHS1Q96JQ0 3298 aa-0.82□□□□□ -2.54
VPS13A-209ENST00000467124 CRIP1P50238 77 aa-0.82□□□□□ -2.54
VPS13A-209ENST00000467124 CLPSL2Q6UWE3 100 aa-0.82□□□□□ -2.54
VPS13A-209ENST00000467124 UBL5Q9BZL1 73 aa-0.82□□□□□ -2.54
VPS13A-209ENST00000467124 TLN1Q9Y490 2541 aaKnown RBP-0.83□□□□□ -2.54
VPS13A-209ENST00000467124 CEP290O15078 2479 aa-0.83□□□□□ -2.54
VPS13A-209ENST00000467124 WDFY3Q8IZQ1 3526 aa-0.83□□□□□ -2.54
VPS13A-209ENST00000467124 CFAP74Q9C0B2 1584 aa-0.83□□□□□ -2.54
VPS13A-209ENST00000467124 WDFY4Q6ZS81 3184 aa-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 MRPL33O75394 65 aaKnown RBP-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 HFM1A2PYH4 1435 aa-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 TJP1Q07157 1748 aa-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 ITSN1Q15811 1721 aa-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 VPS13CQ709C8 3753 aa-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 SPTAN1Q13813 2472 aaKnown RBP-0.84□□□□□ -2.54
VPS13A-209ENST00000467124 CD163L1Q9NR16 1453 aa-0.85□□□□□ -2.55
VPS13A-209ENST00000467124 CEP350Q5VT06 3117 aa-0.85□□□□□ -2.55
VPS13A-209ENST00000467124 KCNQ1DNQ9H478 68 aa-0.85□□□□□ -2.55
VPS13A-209ENST00000467124 RRBP1Q9P2E9 1410 aaKnown RBP-0.85□□□□□ -2.55
VPS13A-209ENST00000467124 LMTK2Q8IWU2 1503 aa-0.85□□□□□ -2.55
VPS13A-209ENST00000467124 CFAP54Q96N23 3096 aa-0.85□□□□□ -2.55
VPS13A-209ENST00000467124 PCNTO95613 3336 aa-0.86□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms