RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 HUWE1Q7Z6Z7 4374 aaKnown RBP6.25□□□□□ -1.41
PTPRE-205ENST00000463727 ATP11AUNQ6ZP68 121 aa6.24□□□□□ -1.41
PTPRE-205ENST00000463727 PRR26Q8N8Z3 221 aa6.23□□□□□ -1.41
PTPRE-205ENST00000463727 Q6ZR54 194 aa6.22□□□□□ -1.41
PTPRE-205ENST00000463727 A0A1B0GU69 56 aa6.22□□□□□ -1.41
PTPRE-205ENST00000463727 Q75L30 129 aa6.22□□□□□ -1.41
PTPRE-205ENST00000463727 COL7A1Q02388 2944 aa6.2□□□□□ -1.42
PTPRE-205ENST00000463727 HRES1P13985 223 aa6.2□□□□□ -1.42
PTPRE-205ENST00000463727 Q96NJ1 140 aa6.2□□□□□ -1.42
PTPRE-205ENST00000463727 LINC01558Q9Y6Z2 57 aa6.19□□□□□ -1.42
PTPRE-205ENST00000463727 A0A087X002 238 aa6.19□□□□□ -1.42
PTPRE-205ENST00000463727 NOTCH2NLQ7Z3S9 236 aa6.19□□□□□ -1.42
PTPRE-205ENST00000463727 CDC42SE1Q9NRR8 79 aa6.19□□□□□ -1.42
PTPRE-205ENST00000463727 TENM2Q9NT68 2774 aa6.19□□□□□ -1.42
PTPRE-205ENST00000463727 C7orf65Q6ZTY9 151 aa6.18□□□□□ -1.42
PTPRE-205ENST00000463727 SPINK1P00995 79 aa6.18□□□□□ -1.42
PTPRE-205ENST00000463727 TYMSOSQ8TAI1 123 aa6.18□□□□□ -1.42
PTPRE-205ENST00000463727 PLA2G1BP04054 148 aaKnown RBP6.17□□□□□ -1.42
PTPRE-205ENST00000463727 KTN1-AS1Q86SY8 53 aa6.16□□□□□ -1.42
PTPRE-205ENST00000463727 DNAH9Q9NYC9 4486 aa6.15□□□□□ -1.42
PTPRE-205ENST00000463727 SRRM2Q9UQ35 2752 aaKnown RBP6.15□□□□□ -1.43
PTPRE-205ENST00000463727 LYSTQ99698 3801 aa6.13□□□□□ -1.43
PTPRE-205ENST00000463727 Q5W150 140 aa6.13□□□□□ -1.43
PTPRE-205ENST00000463727 RBM12B-AS1Q9P1G2 102 aa6.11□□□□□ -1.43
PTPRE-205ENST00000463727 A8MU10 97 aa6.11□□□□□ -1.43
PTPRE-205ENST00000463727 SPINK7P58062 85 aa6.1□□□□□ -1.43
PTPRE-205ENST00000463727 ASB16-AS1Q495Z4 193 aa6.1□□□□□ -1.43
PTPRE-205ENST00000463727 LCA10Q71F78 164 aa6.1□□□□□ -1.43
PTPRE-205ENST00000463727 DNAH1Q9P2D7 4330 aa6.09□□□□□ -1.43
PTPRE-205ENST00000463727 UQCR11O14957 56 aa6.09□□□□□ -1.43
PTPRE-205ENST00000463727 KRTAP10-2P60368 255 aa6.08□□□□□ -1.44
PTPRE-205ENST00000463727 CSMD3Q7Z407 3707 aa6.07□□□□□ -1.44
PTPRE-205ENST00000463727 DNAH10Q8IVF4 4471 aa6.07□□□□□ -1.44
PTPRE-205ENST00000463727 MIR22HGQ0VDD5 57 aa6.05□□□□□ -1.44
PTPRE-205ENST00000463727 TGP01266 2768 aa6.05□□□□□ -1.44
PTPRE-205ENST00000463727 LINC00304Q8N9R0 145 aa6.05□□□□□ -1.44
PTPRE-205ENST00000463727 DMAC1Q96GE9 116 aa6.05□□□□□ -1.44
PTPRE-205ENST00000463727 PLECQ15149 4684 aaKnown RBP6.04□□□□□ -1.44
PTPRE-205ENST00000463727 DNAH7Q8WXX0 4024 aa6.04□□□□□ -1.44
PTPRE-205ENST00000463727 PRKDCP78527 4128 aaKnown RBP6.03□□□□□ -1.44
PTPRE-205ENST00000463727 DNHD1Q96M86 4753 aa6.03□□□□□ -1.44
PTPRE-205ENST00000463727 KRTAP10-1P60331 282 aa6.03□□□□□ -1.44
PTPRE-205ENST00000463727 MEGF8Q7Z7M0 2845 aa6.03□□□□□ -1.44
PTPRE-205ENST00000463727 H3BS24 57 aa6.02□□□□□ -1.45
PTPRE-205ENST00000463727 DYNC2H1Q8NCM8 4307 aaKnown RBP6.01□□□□□ -1.45
PTPRE-205ENST00000463727 Q8N1X5 172 aa6.01□□□□□ -1.45
PTPRE-205ENST00000463727 SMR3BP02814 79 aaPredicted RBP5.99□□□□□ -1.45
PTPRE-205ENST00000463727 KRTAP13-2Q52LG2 175 aa5.99□□□□□ -1.45
PTPRE-205ENST00000463727 STARD9Q9P2P6 4700 aa5.98□□□□□ -1.45
PTPRE-205ENST00000463727 C9orf92A6NGG3 77 aa5.98□□□□□ -1.45
PTPRE-205ENST00000463727 K7ERS5 55 aa5.98□□□□□ -1.45
PTPRE-205ENST00000463727 A6NN06 94 aa5.94□□□□□ -1.46
PTPRE-205ENST00000463727 VPS13DQ5THJ4 4388 aa5.91□□□□□ -1.46
PTPRE-205ENST00000463727 FBN3Q75N90 2809 aa5.9□□□□□ -1.47
PTPRE-205ENST00000463727 KRTAP13-3Q3SY46 172 aa5.89□□□□□ -1.47
PTPRE-205ENST00000463727 PRAC1Q96KF2 57 aa5.88□□□□□ -1.47
PTPRE-205ENST00000463727 KMT2AQ03164 3969 aa5.87□□□□□ -1.47
PTPRE-205ENST00000463727 Q6ZSA8 131 aa5.87□□□□□ -1.47
PTPRE-205ENST00000463727 SPATA8Q6RVD6 105 aa5.86□□□□□ -1.47
PTPRE-205ENST00000463727 KRTAP1-4P0C5Y4 121 aa5.85□□□□□ -1.47
PTPRE-205ENST00000463727 DNAH2Q9P225 4427 aa5.84□□□□□ -1.48
PTPRE-205ENST00000463727 LINC01554Q52M75 96 aa5.83□□□□□ -1.48
PTPRE-205ENST00000463727 KRTAP16-1A8MUX0 517 aa5.82□□□□□ -1.48
PTPRE-205ENST00000463727 A0A1B0GU33 70 aa5.81□□□□□ -1.48
PTPRE-205ENST00000463727 HECTD4Q9Y4D8 3996 aa5.8□□□□□ -1.48
PTPRE-205ENST00000463727 RPS29P62273 56 aaKnown RBP5.78□□□□□ -1.48
PTPRE-205ENST00000463727 DNAH17Q9UFH2 4485 aa5.77□□□□□ -1.49
PTPRE-205ENST00000463727 DMBT1Q9UGM3 2413 aaPredicted RBP5.77□□□□□ -1.49
PTPRE-205ENST00000463727 ADM2Q7Z4H4 148 aa5.75□□□□□ -1.49
PTPRE-205ENST00000463727 CSAG1Q6PB30 78 aa5.73□□□□□ -1.49
PTPRE-205ENST00000463727 DNAH8Q96JB1 4490 aa5.7□□□□□ -1.5
PTPRE-205ENST00000463727 DNAH6Q9C0G6 4158 aa5.69□□□□□ -1.5
PTPRE-205ENST00000463727 HYDINQ4G0P3 5121 aa5.68□□□□□ -1.5
PTPRE-205ENST00000463727 A8MUU9 505 aa5.68□□□□□ -1.5
PTPRE-205ENST00000463727 FRAS1Q86XX4 4008 aa5.68□□□□□ -1.5
PTPRE-205ENST00000463727 H1FX-AS1Q4G0G2 97 aa5.68□□□□□ -1.5
PTPRE-205ENST00000463727 COX6B2Q6YFQ2 88 aa5.68□□□□□ -1.5
PTPRE-205ENST00000463727 C20orf166-AS1Q96NR2 134 aa5.67□□□□□ -1.5
PTPRE-205ENST00000463727 ALMS1Q8TCU4 4167 aa5.67□□□□□ -1.5
PTPRE-205ENST00000463727 DNAH5Q8TE73 4624 aa5.67□□□□□ -1.5
PTPRE-205ENST00000463727 DNAH11Q96DT5 4516 aa5.67□□□□□ -1.5
PTPRE-205ENST00000463727 A0A0D9SG42 100 aa5.65□□□□□ -1.5
PTPRE-205ENST00000463727 FAT2Q9NYQ8 4349 aa5.62□□□□□ -1.51
PTPRE-205ENST00000463727 PKD1P98161 4303 aa5.61□□□□□ -1.51
PTPRE-205ENST00000463727 FLG2Q5D862 2391 aaPredicted RBP5.61□□□□□ -1.51
PTPRE-205ENST00000463727 A0A0A0MQY5 61 aa5.59□□□□□ -1.52
PTPRE-205ENST00000463727 S4R3F8 94 aa5.57□□□□□ -1.52
PTPRE-205ENST00000463727 SACSQ9NZJ4 4579 aa5.57□□□□□ -1.52
PTPRE-205ENST00000463727 H0YAA0 97 aa5.57□□□□□ -1.52
PTPRE-205ENST00000463727 CRIPTQ9P021 101 aa5.57□□□□□ -1.52
PTPRE-205ENST00000463727 LRP1BQ9NZR2 4599 aa5.57□□□□□ -1.52
PTPRE-205ENST00000463727 Q5VSD8 79 aa5.56□□□□□ -1.52
PTPRE-205ENST00000463727 RPL37P61927 97 aaKnown RBP5.55□□□□□ -1.52
PTPRE-205ENST00000463727 PKHD1P08F94 4074 aa5.52□□□□□ -1.53
PTPRE-205ENST00000463727 SPINT4Q6UDR6 99 aa5.52□□□□□ -1.53
PTPRE-205ENST00000463727 KRTAP25-1Q3LHN0 102 aa5.5□□□□□ -1.53
PTPRE-205ENST00000463727 ROMO1P60602 79 aa5.5□□□□□ -1.53
PTPRE-205ENST00000463727 VPS13BQ7Z7G8 4022 aa5.49□□□□□ -1.53
PTPRE-205ENST00000463727 KRTAP3-1Q9BYR8 98 aa5.48□□□□□ -1.53
PTPRE-205ENST00000463727 J3QL48 77 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms