RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 CFDP00746 253 aaPredicted RBP0.69□□□□□ -2.3
HERC4-208ENST00000463478 RRBP1Q9P2E9 1410 aaKnown RBP0.69□□□□□ -2.3
HERC4-208ENST00000463478 UGGT2Q9NYU1 1516 aa0.69□□□□□ -2.3
HERC4-208ENST00000463478 IQGAP1P46940 1657 aa0.69□□□□□ -2.3
HERC4-208ENST00000463478 C5P01031 1676 aa0.68□□□□□ -2.3
HERC4-208ENST00000463478 DNAJC13O75165 2243 aa0.68□□□□□ -2.3
HERC4-208ENST00000463478 QSER1Q2KHR3 1735 aa0.67□□□□□ -2.3
HERC4-208ENST00000463478 HMGA1P17096 107 aaKnown RBP0.67□□□□□ -2.3
HERC4-208ENST00000463478 DEFB112Q30KQ8 113 aa0.67□□□□□ -2.3
HERC4-208ENST00000463478 ABCC1P33527 1531 aa0.67□□□□□ -2.3
HERC4-208ENST00000463478 NKTRP30414 1462 aaKnown RBP0.67□□□□□ -2.3
HERC4-208ENST00000463478 DNAH17Q9UFH2 4485 aa0.66□□□□□ -2.3
HERC4-208ENST00000463478 MAGI3Q5TCQ9 1506 aa0.66□□□□□ -2.3
HERC4-208ENST00000463478 I3L3M4 83 aa0.66□□□□□ -2.3
HERC4-208ENST00000463478 RPL38P63173 70 aaKnown RBP0.66□□□□□ -2.3
HERC4-208ENST00000463478 DEFB121Q5J5C9 76 aa0.66□□□□□ -2.3
HERC4-208ENST00000463478 ATP5EP2Q5VTU8 51 aa0.66□□□□□ -2.3
HERC4-208ENST00000463478 CRYBG1Q9Y4K1 1723 aa0.66□□□□□ -2.3
HERC4-208ENST00000463478 EFCAB5A4FU69 1503 aa0.65□□□□□ -2.31
HERC4-208ENST00000463478 DNAH11Q96DT5 4516 aa0.65□□□□□ -2.31
HERC4-208ENST00000463478 LRRIQ1Q96JM4 1722 aa0.65□□□□□ -2.31
HERC4-208ENST00000463478 SPTY2D1-AS1A0A0U1RR47 76 aa0.65□□□□□ -2.31
HERC4-208ENST00000463478 VPS13BQ7Z7G8 4022 aa0.65□□□□□ -2.31
HERC4-208ENST00000463478 CLIP1P30622 1438 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 URB2Q14146 1524 aaKnown RBP0.64□□□□□ -2.31
HERC4-208ENST00000463478 CCL22O00626 93 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 SPINK4O60575 86 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 SPRR1AP35321 89 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 KRTAP19-6Q3LI70 58 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 CCDC88BA6NC98 1476 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 MYH4Q9Y623 1939 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 TIAM2Q8IVF5 1701 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 UBR1Q8IWV7 1749 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 DEPDC5O75140 1603 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 ABCA5Q8WWZ7 1642 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 VPS13DQ5THJ4 4388 aa0.64□□□□□ -2.31
HERC4-208ENST00000463478 DNAH2Q9P225 4427 aa0.63□□□□□ -2.31
HERC4-208ENST00000463478 SPRR1BP22528 89 aa0.63□□□□□ -2.31
HERC4-208ENST00000463478 COX7BP24311 80 aa0.63□□□□□ -2.31
HERC4-208ENST00000463478 BVES-AS1Q5T3Y7 98 aa0.63□□□□□ -2.31
HERC4-208ENST00000463478 CLTCL1P53675 1640 aa0.63□□□□□ -2.31
HERC4-208ENST00000463478 LPAP08519 4548 aa0.63□□□□□ -2.31
HERC4-208ENST00000463478 SAMD9LQ8IVG5 1584 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 LCE6AA0A183 80 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 DEFB109BQ30KR1 87 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 GAFA1Q96PS6 74 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 U3KQA8 63 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 TNCP24821 2201 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 MUC17Q685J3 4493 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 ANKARQ7Z5J8 1434 aa0.62□□□□□ -2.31
HERC4-208ENST00000463478 NCOA2Q15596 1464 aa0.61□□□□□ -2.31
HERC4-208ENST00000463478 TOGARAM1Q9Y4F4 1720 aa0.61□□□□□ -2.31
HERC4-208ENST00000463478 CPSF4LA6NMK7 179 aaKnown RBP0.61□□□□□ -2.31
HERC4-208ENST00000463478 COL14A1Q05707 1796 aaKnown RBP0.6□□□□□ -2.31
HERC4-208ENST00000463478 TRAV21A0A0B4J279 112 aa0.6□□□□□ -2.31
HERC4-208ENST00000463478 H3BUT2 72 aa0.6□□□□□ -2.31
HERC4-208ENST00000463478 COX6B2Q6YFQ2 88 aa0.6□□□□□ -2.31
HERC4-208ENST00000463478 C18orf32Q8TCD1 76 aa0.6□□□□□ -2.31
HERC4-208ENST00000463478 CFAP74Q9C0B2 1584 aa0.6□□□□□ -2.31
HERC4-208ENST00000463478 RGPD8O14715 1765 aaPredicted RBP0.6□□□□□ -2.31
HERC4-208ENST00000463478 RGPD5Q99666 1765 aa0.6□□□□□ -2.31
HERC4-208ENST00000463478 SYNE1Q8NF91 8797 aaKnown RBP0.58□□□□□ -2.32
HERC4-208ENST00000463478 MRPL34Q9BQ48 92 aaKnown RBP0.58□□□□□ -2.32
HERC4-208ENST00000463478 RICTORQ6R327 1708 aa0.58□□□□□ -2.32
HERC4-208ENST00000463478 PTPN23Q9H3S7 1636 aa0.57□□□□□ -2.32
HERC4-208ENST00000463478 KRTAP21-1Q3LI58 79 aa0.57□□□□□ -2.32
HERC4-208ENST00000463478 MROH1Q8NDA8 1641 aa0.56□□□□□ -2.32
HERC4-208ENST00000463478 UMAD1C9J7I0 102 aa0.56□□□□□ -2.32
HERC4-208ENST00000463478 WFDC9Q8NEX5 89 aa0.56□□□□□ -2.32
HERC4-208ENST00000463478 DEFB105AQ8NG35 78 aa0.56□□□□□ -2.32
HERC4-208ENST00000463478 MROH2AA6NES4 1674 aa0.56□□□□□ -2.32
HERC4-208ENST00000463478 ALS2Q96Q42 1657 aa0.56□□□□□ -2.32
HERC4-208ENST00000463478 NRAPQ86VF7 1730 aa0.55□□□□□ -2.32
HERC4-208ENST00000463478 IFI27P40305 119 aaPredicted RBP0.55□□□□□ -2.32
HERC4-208ENST00000463478 USF3Q68DE3 2245 aa0.54□□□□□ -2.32
HERC4-208ENST00000463478 MROH2BQ7Z745 1585 aa0.54□□□□□ -2.32
HERC4-208ENST00000463478 SMIM13P0DJ93 91 aa0.54□□□□□ -2.32
HERC4-208ENST00000463478 DUOX2Q9NRD8 1548 aa0.54□□□□□ -2.32
HERC4-208ENST00000463478 A0A087WXM4 84 aa0.53□□□□□ -2.32
HERC4-208ENST00000463478 CDKN2A-AS1Q9UH64 79 aa0.53□□□□□ -2.32
HERC4-208ENST00000463478 ATP7AQ04656 1500 aa0.53□□□□□ -2.33
HERC4-208ENST00000463478 DOT1LQ8TEK3 1739 aa0.52□□□□□ -2.33
HERC4-208ENST00000463478 FLGP20930 4061 aaPredicted RBP0.52□□□□□ -2.33
HERC4-208ENST00000463478 PARP4Q9UKK3 1724 aaKnown RBP0.52□□□□□ -2.33
HERC4-208ENST00000463478 DNAH8Q96JB1 4490 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 SPRR2EP22531 72 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 SPRR2DP22532 72 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 SPRR2BP35325 72 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 SPRR2AP35326 72 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 KIF20BQ96Q89 1820 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 SMCO4Q9NRQ5 59 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 ANKRD50Q9ULJ7 1429 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 APLNQ9ULZ1 77 aa0.51□□□□□ -2.33
HERC4-208ENST00000463478 HFM1A2PYH4 1435 aa0.5□□□□□ -2.33
HERC4-208ENST00000463478 PDCD5O14737 125 aa0.5□□□□□ -2.33
HERC4-208ENST00000463478 IFI6P09912 130 aa0.5□□□□□ -2.33
HERC4-208ENST00000463478 MT4P47944 62 aa0.5□□□□□ -2.33
HERC4-208ENST00000463478 UBR3Q6ZT12 1888 aa0.49□□□□□ -2.33
HERC4-208ENST00000463478 PIK3C2BO00750 1634 aa0.49□□□□□ -2.33
HERC4-208ENST00000463478 ANKRD36A6QL64 1941 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms