RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 DNAH8Q96JB1 4490 aa7.51□□□□□ -1.21
HDAC4-208ENST00000463007 SPANXA2-OT1Q8N9U9 137 aa7.51□□□□□ -1.21
HDAC4-208ENST00000463007 FRAS1Q86XX4 4008 aa7.5□□□□□ -1.21
HDAC4-208ENST00000463007 C8orf17Q9NRJ1 99 aa7.49□□□□□ -1.21
HDAC4-208ENST00000463007 PRR26Q8N8Z3 221 aa7.49□□□□□ -1.21
HDAC4-208ENST00000463007 IGLV7-46A0A075B6I9 117 aa7.47□□□□□ -1.21
HDAC4-208ENST00000463007 H3BPC8 53 aa7.47□□□□□ -1.21
HDAC4-208ENST00000463007 SPACA4Q8TDM5 124 aa7.47□□□□□ -1.21
HDAC4-208ENST00000463007 Q6ZR54 194 aa7.46□□□□□ -1.22
HDAC4-208ENST00000463007 CIRBP-AS1Q8TBR5 109 aa7.46□□□□□ -1.22
HDAC4-208ENST00000463007 Q96NJ1 140 aa7.46□□□□□ -1.22
HDAC4-208ENST00000463007 SPINK7P58062 85 aa7.45□□□□□ -1.22
HDAC4-208ENST00000463007 HRES1P13985 223 aa7.44□□□□□ -1.22
HDAC4-208ENST00000463007 LOC101927531A0A1B0GV80 90 aa7.43□□□□□ -1.22
HDAC4-208ENST00000463007 A0A087WTM6 91 aa7.43□□□□□ -1.22
HDAC4-208ENST00000463007 A0A1B0GVX0 72 aa7.43□□□□□ -1.22
HDAC4-208ENST00000463007 PSORS1C2Q9UIG4 136 aa7.43□□□□□ -1.22
HDAC4-208ENST00000463007 DNAH11Q96DT5 4516 aa7.42□□□□□ -1.22
HDAC4-208ENST00000463007 MRPL34Q9BQ48 92 aaKnown RBP7.41□□□□□ -1.22
HDAC4-208ENST00000463007 ALMS1Q8TCU4 4167 aa7.41□□□□□ -1.22
HDAC4-208ENST00000463007 DNAH5Q8TE73 4624 aa7.41□□□□□ -1.22
HDAC4-208ENST00000463007 Q5W150 140 aa7.4□□□□□ -1.22
HDAC4-208ENST00000463007 Q75L30 129 aa7.4□□□□□ -1.23
HDAC4-208ENST00000463007 ATP11AUNQ6ZP68 121 aa7.39□□□□□ -1.23
HDAC4-208ENST00000463007 TP53AIP1Q9HCN2 124 aa7.39□□□□□ -1.23
HDAC4-208ENST00000463007 H3BS24 57 aa7.37□□□□□ -1.23
HDAC4-208ENST00000463007 WWC2-AS2Q96NR7 200 aa7.37□□□□□ -1.23
HDAC4-208ENST00000463007 LINC00483Q53H64 154 aa7.37□□□□□ -1.23
HDAC4-208ENST00000463007 PKD1P98161 4303 aa7.36□□□□□ -1.23
HDAC4-208ENST00000463007 PLAC8Q9NZF1 115 aa7.35□□□□□ -1.23
HDAC4-208ENST00000463007 FAT2Q9NYQ8 4349 aa7.35□□□□□ -1.23
HDAC4-208ENST00000463007 RTL8CO15255 209 aa7.34□□□□□ -1.23
HDAC4-208ENST00000463007 CDC42SE1Q9NRR8 79 aa7.34□□□□□ -1.23
HDAC4-208ENST00000463007 C8orf87E5RJ46 101 aa7.33□□□□□ -1.24
HDAC4-208ENST00000463007 HYDINQ4G0P3 5121 aa7.33□□□□□ -1.24
HDAC4-208ENST00000463007 IGLV5-52A0A0A0MRZ9 124 aa7.32□□□□□ -1.24
HDAC4-208ENST00000463007 LINC01558Q9Y6Z2 57 aa7.32□□□□□ -1.24
HDAC4-208ENST00000463007 C7orf65Q6ZTY9 151 aa7.31□□□□□ -1.24
HDAC4-208ENST00000463007 PRAC1Q96KF2 57 aa7.3□□□□□ -1.24
HDAC4-208ENST00000463007 A6NN06 94 aa7.3□□□□□ -1.24
HDAC4-208ENST00000463007 ZNF861PO60384 105 aa7.3□□□□□ -1.24
HDAC4-208ENST00000463007 ZNF706Q9Y5V0 76 aaPredicted RBP7.29□□□□□ -1.24
HDAC4-208ENST00000463007 ASB16-AS1Q495Z4 193 aa7.28□□□□□ -1.24
HDAC4-208ENST00000463007 ADM2Q7Z4H4 148 aa7.26□□□□□ -1.25
HDAC4-208ENST00000463007 IGKV2D-30A0A075B6S6 120 aa7.26□□□□□ -1.25
HDAC4-208ENST00000463007 IGKV2-30P06310 120 aa7.26□□□□□ -1.25
HDAC4-208ENST00000463007 C1orf134Q5TEV5 83 aa7.25□□□□□ -1.25
HDAC4-208ENST00000463007 SPINK1P00995 79 aa7.24□□□□□ -1.25
HDAC4-208ENST00000463007 ACYP2P14621 99 aa7.24□□□□□ -1.25
HDAC4-208ENST00000463007 LRP1BQ9NZR2 4599 aa7.22□□□□□ -1.25
HDAC4-208ENST00000463007 A0A1B0GU69 56 aa7.21□□□□□ -1.25
HDAC4-208ENST00000463007 LINC00313P59037 77 aa7.21□□□□□ -1.26
HDAC4-208ENST00000463007 LY6G6CO95867 125 aa7.2□□□□□ -1.26
HDAC4-208ENST00000463007 IGLV7-43P04211 117 aa7.2□□□□□ -1.26
HDAC4-208ENST00000463007 KRTAP10-2P60368 255 aa7.19□□□□□ -1.26
HDAC4-208ENST00000463007 FLG2Q5D862 2391 aaPredicted RBP7.19□□□□□ -1.26
HDAC4-208ENST00000463007 DMBT1Q9UGM3 2413 aaPredicted RBP7.19□□□□□ -1.26
HDAC4-208ENST00000463007 Q6ZSA8 131 aa7.18□□□□□ -1.26
HDAC4-208ENST00000463007 VPS13BQ7Z7G8 4022 aa7.16□□□□□ -1.26
HDAC4-208ENST00000463007 KRTAP21-3Q3LHN1 58 aa7.14□□□□□ -1.27
HDAC4-208ENST00000463007 SACSQ9NZJ4 4579 aa7.13□□□□□ -1.27
HDAC4-208ENST00000463007 KRTAP13-3Q3SY46 172 aa7.12□□□□□ -1.27
HDAC4-208ENST00000463007 PKHD1P08F94 4074 aa7.12□□□□□ -1.27
HDAC4-208ENST00000463007 LINC01554Q52M75 96 aa7.11□□□□□ -1.27
HDAC4-208ENST00000463007 Q8N1X5 172 aa7.11□□□□□ -1.27
HDAC4-208ENST00000463007 FAM229AH3BQW9 127 aa7.1□□□□□ -1.27
HDAC4-208ENST00000463007 KRTAP10-1P60331 282 aa7.1□□□□□ -1.27
HDAC4-208ENST00000463007 DMAC1Q96GE9 116 aa7.09□□□□□ -1.27
HDAC4-208ENST00000463007 MIR22HGQ0VDD5 57 aa7.08□□□□□ -1.28
HDAC4-208ENST00000463007 KRTAP13-2Q52LG2 175 aa7.07□□□□□ -1.28
HDAC4-208ENST00000463007 SSBP3-AS1Q7Z2R9 100 aa7.05□□□□□ -1.28
HDAC4-208ENST00000463007 UQCR11O14957 56 aa7.04□□□□□ -1.28
HDAC4-208ENST00000463007 KRTAP1-4P0C5Y4 121 aa7.03□□□□□ -1.28
HDAC4-208ENST00000463007 PLA2G1BP04054 148 aaKnown RBP7□□□□□ -1.29
HDAC4-208ENST00000463007 CSAG1Q6PB30 78 aa6.98□□□□□ -1.29
HDAC4-208ENST00000463007 DYNC1H1Q14204 4646 aaKnown RBP6.97□□□□□ -1.29
HDAC4-208ENST00000463007 PKHD1L1Q86WI1 4243 aa6.97□□□□□ -1.29
HDAC4-208ENST00000463007 C9orf92A6NGG3 77 aa6.96□□□□□ -1.29
HDAC4-208ENST00000463007 SPATA8Q6RVD6 105 aa6.96□□□□□ -1.3
HDAC4-208ENST00000463007 TYMSOSQ8TAI1 123 aa6.95□□□□□ -1.3
HDAC4-208ENST00000463007 APOBP04114 4563 aaKnown RBP6.95□□□□□ -1.3
HDAC4-208ENST00000463007 KRTAP16-1A8MUX0 517 aa6.94□□□□□ -1.3
HDAC4-208ENST00000463007 RYR2Q92736 4967 aa6.94□□□□□ -1.3
HDAC4-208ENST00000463007 SMR3BP02814 79 aaPredicted RBP6.92□□□□□ -1.3
HDAC4-208ENST00000463007 CRIPTQ9P021 101 aa6.9□□□□□ -1.3
HDAC4-208ENST00000463007 A0A1B0GVY2 172 aa6.88□□□□□ -1.31
HDAC4-208ENST00000463007 KRTAP10-4P60372 401 aaPredicted RBP6.85□□□□□ -1.31
HDAC4-208ENST00000463007 KMT2CQ8NEZ4 4911 aaKnown RBP6.84□□□□□ -1.32
HDAC4-208ENST00000463007 FAT1Q14517 4588 aa6.83□□□□□ -1.32
HDAC4-208ENST00000463007 A0A0A0MQY5 61 aa6.82□□□□□ -1.32
HDAC4-208ENST00000463007 RPS29P62273 56 aaKnown RBP6.8□□□□□ -1.32
HDAC4-208ENST00000463007 LINC00304Q8N9R0 145 aa6.79□□□□□ -1.32
HDAC4-208ENST00000463007 H0YAA0 97 aa6.78□□□□□ -1.32
HDAC4-208ENST00000463007 A0A1B0GU33 70 aa6.74□□□□□ -1.33
HDAC4-208ENST00000463007 TNXBP22105 4242 aa6.71□□□□□ -1.33
HDAC4-208ENST00000463007 KRTAP3-1Q9BYR8 98 aa6.69□□□□□ -1.34
HDAC4-208ENST00000463007 HSPG2P98160 4391 aa6.68□□□□□ -1.34
HDAC4-208ENST00000463007 A0A0D9SG42 100 aa6.67□□□□□ -1.34
HDAC4-208ENST00000463007 RYR3Q15413 4870 aa6.65□□□□□ -1.34
HDAC4-208ENST00000463007 A8MUU9 505 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms