RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 DSCR10P59022 87 aa8.16□□□□□ -1.1
COL7A1-204ENST00000462475 KRTAP9-7A8MTY7 169 aa8.14□□□□□ -1.11
COL7A1-204ENST00000462475 BAALC-AS2P0C853 105 aa8.13□□□□□ -1.11
COL7A1-204ENST00000462475 ETDBQ3ZM63 59 aa8.13□□□□□ -1.11
COL7A1-204ENST00000462475 KRTAP16-1A8MUX0 517 aa8.11□□□□□ -1.11
COL7A1-204ENST00000462475 SIGMAR1Q99720 223 aa8.11□□□□□ -1.11
COL7A1-204ENST00000462475 ORMDL1Q9P0S3 153 aa8.11□□□□□ -1.11
COL7A1-204ENST00000462475 MT2AP02795 61 aa8.1□□□□□ -1.11
COL7A1-204ENST00000462475 A0A1W2PNM2 257 aa8.09□□□□□ -1.11
COL7A1-204ENST00000462475 FCGBPQ9Y6R7 5405 aaPredicted RBP8.09□□□□□ -1.11
COL7A1-204ENST00000462475 H3BQ85 93 aa8.08□□□□□ -1.12
COL7A1-204ENST00000462475 GHRHP01286 108 aa8.07□□□□□ -1.12
COL7A1-204ENST00000462475 FAM236DA0A1B0GTK5 79 aa8.06□□□□□ -1.12
COL7A1-204ENST00000462475 TMEM256-PLSCR3K7ERE1 68 aa8.06□□□□□ -1.12
COL7A1-204ENST00000462475 K7ERU9 68 aa8.06□□□□□ -1.12
COL7A1-204ENST00000462475 FAM236CP0DP71 79 aa8.06□□□□□ -1.12
COL7A1-204ENST00000462475 J3QR89 54 aa8.05□□□□□ -1.12
COL7A1-204ENST00000462475 MT1FP04733 61 aa8.04□□□□□ -1.12
COL7A1-204ENST00000462475 LINC00313P59037 77 aa8.04□□□□□ -1.12
COL7A1-204ENST00000462475 IGKV4-1P06312 121 aa8.03□□□□□ -1.12
COL7A1-204ENST00000462475 HRES1P13985 223 aa8.03□□□□□ -1.12
COL7A1-204ENST00000462475 MPLKIPQ8TAP9 179 aa8.03□□□□□ -1.12
COL7A1-204ENST00000462475 LCE2BO14633 110 aa8.02□□□□□ -1.13
COL7A1-204ENST00000462475 NOTCH2NLQ7Z3S9 236 aa8.02□□□□□ -1.13
COL7A1-204ENST00000462475 A0A1B0GV72 72 aa8.01□□□□□ -1.13
COL7A1-204ENST00000462475 TRBV7-4A0A0J9YYF1 115 aa7.99□□□□□ -1.13
COL7A1-204ENST00000462475 JMJD7-PLA2G4BH0Y9G9 81 aa7.99□□□□□ -1.13
COL7A1-204ENST00000462475 DEFB116Q30KQ4 102 aa7.99□□□□□ -1.13
COL7A1-204ENST00000462475 KRTAP19-1Q8IUB9 90 aa7.99□□□□□ -1.13
COL7A1-204ENST00000462475 RBM12B-AS1Q9P1G2 102 aa7.99□□□□□ -1.13
COL7A1-204ENST00000462475 KRTAP9-3Q9BYQ3 159 aa7.98□□□□□ -1.13
COL7A1-204ENST00000462475 KRTAP10-10P60014 251 aa7.96□□□□□ -1.14
COL7A1-204ENST00000462475 LINC00472Q9H8W2 130 aa7.96□□□□□ -1.14
COL7A1-204ENST00000462475 IGHV6-1A0A0B4J1U7 121 aa7.95□□□□□ -1.14
COL7A1-204ENST00000462475 RBM3P98179 157 aaKnown RBP7.93□□□□□ -1.14
COL7A1-204ENST00000462475 CCKP06307 115 aa7.92□□□□□ -1.14
COL7A1-204ENST00000462475 C14orf132Q9NPU4 83 aa7.92□□□□□ -1.14
COL7A1-204ENST00000462475 FAM240AA0A1B0GVK7 77 aa7.9□□□□□ -1.14
COL7A1-204ENST00000462475 ACYP1P07311 99 aa7.9□□□□□ -1.14
COL7A1-204ENST00000462475 LOC110117498A0A087WWA1 95 aa7.89□□□□□ -1.15
COL7A1-204ENST00000462475 PDE6GP18545 87 aa7.89□□□□□ -1.15
COL7A1-204ENST00000462475 DSCR8Q96T75 97 aa7.89□□□□□ -1.15
COL7A1-204ENST00000462475 C21orf62-AS1Q17RA5 79 aa7.88□□□□□ -1.15
COL7A1-204ENST00000462475 VPS25Q9BRG1 176 aa7.88□□□□□ -1.15
COL7A1-204ENST00000462475 A0A1B0GVX0 72 aa7.86□□□□□ -1.15
COL7A1-204ENST00000462475 C8orf87E5RJ46 101 aa7.86□□□□□ -1.15
COL7A1-204ENST00000462475 MACF1Q9UPN3 7388 aaKnown RBP7.85□□□□□ -1.15
COL7A1-204ENST00000462475 Q6ZQT0 140 aa7.85□□□□□ -1.15
COL7A1-204ENST00000462475 ZCCHC13Q8WW36 166 aaKnown RBP7.84□□□□□ -1.15
COL7A1-204ENST00000462475 SYNE2Q8WXH0 6885 aaKnown RBP7.82□□□□□ -1.16
COL7A1-204ENST00000462475 SPINK7P58062 85 aa7.81□□□□□ -1.16
COL7A1-204ENST00000462475 LINC00846Q9NV44 126 aa7.77□□□□□ -1.17
COL7A1-204ENST00000462475 KRTAP19-6Q3LI70 58 aa7.76□□□□□ -1.17
COL7A1-204ENST00000462475 A0A1B0GW54 56 aa7.75□□□□□ -1.17
COL7A1-204ENST00000462475 J3KT08 172 aa7.75□□□□□ -1.17
COL7A1-204ENST00000462475 LINC00643Q86TS7 51 aa7.75□□□□□ -1.17
COL7A1-204ENST00000462475 WFDC13Q8IUB5 93 aa7.74□□□□□ -1.17
COL7A1-204ENST00000462475 Q8N9P0 234 aaPredicted RBP7.74□□□□□ -1.17
COL7A1-204ENST00000462475 UBL5Q9BZL1 73 aa7.73□□□□□ -1.17
COL7A1-204ENST00000462475 A8MWP4 228 aa7.71□□□□□ -1.18
COL7A1-204ENST00000462475 MT-ATP8P03928 68 aa7.71□□□□□ -1.18
COL7A1-204ENST00000462475 NDUFB1O75438 58 aa7.69□□□□□ -1.18
COL7A1-204ENST00000462475 C8orf17Q9NRJ1 99 aa7.69□□□□□ -1.18
COL7A1-204ENST00000462475 Q6ZVQ6 151 aa7.68□□□□□ -1.18
COL7A1-204ENST00000462475 ATP5EP2Q5VTU8 51 aa7.66□□□□□ -1.18
COL7A1-204ENST00000462475 IGKV3D-7A0A0C4DH55 119 aa7.65□□□□□ -1.18
COL7A1-204ENST00000462475 NREPQ16612 68 aa7.65□□□□□ -1.18
COL7A1-204ENST00000462475 IMUPQ9GZP8 106 aa7.65□□□□□ -1.18
COL7A1-204ENST00000462475 SCGB1A1P11684 91 aa7.61□□□□□ -1.19
COL7A1-204ENST00000462475 CXCL6P80162 114 aa7.6□□□□□ -1.19
COL7A1-204ENST00000462475 BPY2O14599 106 aa7.57□□□□□ -1.2
COL7A1-204ENST00000462475 PRR15Q8IV56 129 aa7.57□□□□□ -1.2
COL7A1-204ENST00000462475 MMP24-AS1A0A0U1RRL7 71 aa7.55□□□□□ -1.2
COL7A1-204ENST00000462475 H1FX-AS1Q4G0G2 97 aa7.55□□□□□ -1.2
COL7A1-204ENST00000462475 HIST1H4AP62805 103 aaKnown RBP7.54□□□□□ -1.2
COL7A1-204ENST00000462475 MRPL34Q9BQ48 92 aaKnown RBP7.54□□□□□ -1.2
COL7A1-204ENST00000462475 KRTAP6-3Q3LI67 103 aa7.53□□□□□ -1.2
COL7A1-204ENST00000462475 TMEM254Q8TBM7 123 aa7.53□□□□□ -1.2
COL7A1-204ENST00000462475 A0A087WVE0 104 aa7.49□□□□□ -1.21
COL7A1-204ENST00000462475 FAM236AA0A1B0GUQ0 79 aa7.48□□□□□ -1.21
COL7A1-204ENST00000462475 FAM236BA0A1B0GV22 79 aa7.48□□□□□ -1.21
COL7A1-204ENST00000462475 hDV103S1A0JD37 113 aa7.47□□□□□ -1.21
COL7A1-204ENST00000462475 K7EQZ3 153 aa7.47□□□□□ -1.21
COL7A1-204ENST00000462475 NDUFS5O43920 106 aa7.47□□□□□ -1.21
COL7A1-204ENST00000462475 IGKV2D-30A0A075B6S6 120 aa7.46□□□□□ -1.22
COL7A1-204ENST00000462475 IGKV2-30P06310 120 aa7.46□□□□□ -1.22
COL7A1-204ENST00000462475 Q8N9L7 120 aa7.46□□□□□ -1.22
COL7A1-204ENST00000462475 Q5W150 140 aa7.43□□□□□ -1.22
COL7A1-204ENST00000462475 PCP4P48539 62 aa7.42□□□□□ -1.22
COL7A1-204ENST00000462475 C7orf65Q6ZTY9 151 aa7.42□□□□□ -1.22
COL7A1-204ENST00000462475 ATOX1O00244 68 aa7.41□□□□□ -1.22
COL7A1-204ENST00000462475 ANAPC13Q9BS18 74 aa7.4□□□□□ -1.22
COL7A1-204ENST00000462475 NEBP20929 6669 aa7.38□□□□□ -1.23
COL7A1-204ENST00000462475 HCG22E2RYF7 251 aa7.36□□□□□ -1.23
COL7A1-204ENST00000462475 C4orf26Q17RF5 130 aa7.36□□□□□ -1.23
COL7A1-204ENST00000462475 MUC12Q9UKN1 5478 aa7.35□□□□□ -1.23
COL7A1-204ENST00000462475 SMIM20Q8N5G0 67 aa7.35□□□□□ -1.23
COL7A1-204ENST00000462475 C5orf47Q569G3 176 aa7.32□□□□□ -1.24
COL7A1-204ENST00000462475 MT1BP07438 61 aa7.31□□□□□ -1.24
COL7A1-204ENST00000462475 CASC2Q6XLA1 102 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms