RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 Q1T7F1 81 aa7.36□□□□□ -1.23
TCOF1-205ENST00000439160 NBPF19A0A087WUL8 3843 aa7.35□□□□□ -1.23
TCOF1-205ENST00000439160 ZFHX3Q15911 3703 aa7.35□□□□□ -1.23
TCOF1-205ENST00000439160 IGLV7-46A0A075B6I9 117 aa7.35□□□□□ -1.23
TCOF1-205ENST00000439160 UQCR11O14957 56 aa7.33□□□□□ -1.24
TCOF1-205ENST00000439160 Q8N9P0 234 aaPredicted RBP7.32□□□□□ -1.24
TCOF1-205ENST00000439160 HRES1P13985 223 aa7.31□□□□□ -1.24
TCOF1-205ENST00000439160 VPS13CQ709C8 3753 aa7.31□□□□□ -1.24
TCOF1-205ENST00000439160 LINC00483Q53H64 154 aa7.3□□□□□ -1.24
TCOF1-205ENST00000439160 A0A087X002 238 aa7.29□□□□□ -1.24
TCOF1-205ENST00000439160 Q5VSD8 79 aa7.28□□□□□ -1.24
TCOF1-205ENST00000439160 KTN1-AS1Q86SY8 53 aa7.27□□□□□ -1.25
TCOF1-205ENST00000439160 TENM2Q9NT68 2774 aa7.26□□□□□ -1.25
TCOF1-205ENST00000439160 RBM12B-AS1Q9P1G2 102 aa7.25□□□□□ -1.25
TCOF1-205ENST00000439160 MIR22HGQ0VDD5 57 aa7.25□□□□□ -1.25
TCOF1-205ENST00000439160 ZCCHC13Q8WW36 166 aaKnown RBP7.24□□□□□ -1.25
TCOF1-205ENST00000439160 Q5W150 140 aa7.24□□□□□ -1.25
TCOF1-205ENST00000439160 CDC42SE1Q9NRR8 79 aa7.24□□□□□ -1.25
TCOF1-205ENST00000439160 Q6ZSA8 131 aa7.23□□□□□ -1.25
TCOF1-205ENST00000439160 TGP01266 2768 aa7.22□□□□□ -1.25
TCOF1-205ENST00000439160 Q5VV11 94 aa7.21□□□□□ -1.25
TCOF1-205ENST00000439160 NOTCH2NLQ7Z3S9 236 aa7.18□□□□□ -1.26
TCOF1-205ENST00000439160 KRTAP29-1A8MX34 341 aaPredicted RBP7.17□□□□□ -1.26
TCOF1-205ENST00000439160 SPINK7P58062 85 aa7.17□□□□□ -1.26
TCOF1-205ENST00000439160 Q75L30 129 aa7.16□□□□□ -1.26
TCOF1-205ENST00000439160 KRTAP13-1Q8IUC0 172 aa7.15□□□□□ -1.26
TCOF1-205ENST00000439160 A0A0D9SG42 100 aa7.15□□□□□ -1.27
TCOF1-205ENST00000439160 LINC01554Q52M75 96 aa7.15□□□□□ -1.27
TCOF1-205ENST00000439160 LCA10Q71F78 164 aa7.14□□□□□ -1.27
TCOF1-205ENST00000439160 KRTAP21-3Q3LHN1 58 aa7.13□□□□□ -1.27
TCOF1-205ENST00000439160 LINC01558Q9Y6Z2 57 aa7.13□□□□□ -1.27
TCOF1-205ENST00000439160 KRTAP13-2Q52LG2 175 aa7.09□□□□□ -1.27
TCOF1-205ENST00000439160 PRAC1Q96KF2 57 aa7.08□□□□□ -1.28
TCOF1-205ENST00000439160 SPINT4Q6UDR6 99 aa7.07□□□□□ -1.28
TCOF1-205ENST00000439160 A0A1B0GU33 70 aa7.04□□□□□ -1.28
TCOF1-205ENST00000439160 A8MU10 97 aa7.02□□□□□ -1.29
TCOF1-205ENST00000439160 ASB16-AS1Q495Z4 193 aa7□□□□□ -1.29
TCOF1-205ENST00000439160 SRRM2Q9UQ35 2752 aaKnown RBP7□□□□□ -1.29
TCOF1-205ENST00000439160 CSAG1Q6PB30 78 aa6.99□□□□□ -1.29
TCOF1-205ENST00000439160 DMAC1Q96GE9 116 aa6.99□□□□□ -1.29
TCOF1-205ENST00000439160 S4R3F8 94 aa6.98□□□□□ -1.29
TCOF1-205ENST00000439160 ZNF469Q96JG9 3925 aaPredicted RBP6.98□□□□□ -1.29
TCOF1-205ENST00000439160 CRIPTQ9P021 101 aa6.97□□□□□ -1.29
TCOF1-205ENST00000439160 SEC61BP60468 96 aaKnown RBP6.96□□□□□ -1.29
TCOF1-205ENST00000439160 TRRAPQ9Y4A5 3859 aa6.96□□□□□ -1.3
TCOF1-205ENST00000439160 M0R2T5 61 aa6.95□□□□□ -1.3
TCOF1-205ENST00000439160 RPS29P62273 56 aaKnown RBP6.92□□□□□ -1.3
TCOF1-205ENST00000439160 ANK3Q12955 4377 aaKnown RBP6.87□□□□□ -1.31
TCOF1-205ENST00000439160 KRTAP1-4P0C5Y4 121 aa6.86□□□□□ -1.31
TCOF1-205ENST00000439160 CAMK2N1Q7Z7J9 78 aa6.85□□□□□ -1.31
TCOF1-205ENST00000439160 R4GN34 69 aa6.83□□□□□ -1.32
TCOF1-205ENST00000439160 FBN3Q75N90 2809 aa6.8□□□□□ -1.32
TCOF1-205ENST00000439160 A6NN06 94 aa6.78□□□□□ -1.32
TCOF1-205ENST00000439160 ADM2Q7Z4H4 148 aa6.76□□□□□ -1.33
TCOF1-205ENST00000439160 SPATA8Q6RVD6 105 aa6.76□□□□□ -1.33
TCOF1-205ENST00000439160 H1FX-AS1Q4G0G2 97 aa6.75□□□□□ -1.33
TCOF1-205ENST00000439160 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
TCOF1-205ENST00000439160 M0QZ58 72 aa6.72□□□□□ -1.33
TCOF1-205ENST00000439160 A8MUU9 505 aa6.7□□□□□ -1.34
TCOF1-205ENST00000439160 H3BS24 57 aa6.7□□□□□ -1.34
TCOF1-205ENST00000439160 C20orf166-AS1Q96NR2 134 aa6.69□□□□□ -1.34
TCOF1-205ENST00000439160 MEGF8Q7Z7M0 2845 aa6.68□□□□□ -1.34
TCOF1-205ENST00000439160 COL7A1Q02388 2944 aa6.67□□□□□ -1.34
TCOF1-205ENST00000439160 XP32Q5T750 250 aa6.6□□□□□ -1.35
TCOF1-205ENST00000439160 A0A1B0GVY2 172 aa6.57□□□□□ -1.36
TCOF1-205ENST00000439160 KRTAP16-1A8MUX0 517 aa6.57□□□□□ -1.36
TCOF1-205ENST00000439160 ROMO1P60602 79 aa6.56□□□□□ -1.36
TCOF1-205ENST00000439160 AKAP9Q99996 3911 aa6.51□□□□□ -1.37
TCOF1-205ENST00000439160 KRTAP25-1Q3LHN0 102 aa6.46□□□□□ -1.38
TCOF1-205ENST00000439160 KRTAP10-8P60410 259 aa6.45□□□□□ -1.38
TCOF1-205ENST00000439160 LUZP6Q538Z0 58 aa6.45□□□□□ -1.38
TCOF1-205ENST00000439160 TPRXLQ17RH7 258 aa6.44□□□□□ -1.38
TCOF1-205ENST00000439160 KRTAP13-3Q3SY46 172 aa6.44□□□□□ -1.38
TCOF1-205ENST00000439160 PLAC4Q8WY50 150 aa6.43□□□□□ -1.38
TCOF1-205ENST00000439160 CSMD3Q7Z407 3707 aa6.34□□□□□ -1.39
TCOF1-205ENST00000439160 HUWE1Q7Z6Z7 4374 aaKnown RBP6.34□□□□□ -1.39
TCOF1-205ENST00000439160 H0YAA0 97 aa6.33□□□□□ -1.4
TCOF1-205ENST00000439160 P0C880 135 aa6.25□□□□□ -1.41
TCOF1-205ENST00000439160 C10orf95Q9H7T3 257 aa6.24□□□□□ -1.41
TCOF1-205ENST00000439160 NDUFAF8A1L188 74 aa6.24□□□□□ -1.41
TCOF1-205ENST00000439160 DNHD1Q96M86 4753 aa6.19□□□□□ -1.42
TCOF1-205ENST00000439160 DNAH9Q9NYC9 4486 aa6.14□□□□□ -1.43
TCOF1-205ENST00000439160 TNP1P09430 55 aa6.13□□□□□ -1.43
TCOF1-205ENST00000439160 KRTAP3-1Q9BYR8 98 aa6.12□□□□□ -1.43
TCOF1-205ENST00000439160 A0A0A0MQY5 61 aa6.11□□□□□ -1.43
TCOF1-205ENST00000439160 KRTAP10-10P60014 251 aa6.1□□□□□ -1.43
TCOF1-205ENST00000439160 MT1HL1P0DM35 61 aa6.08□□□□□ -1.44
TCOF1-205ENST00000439160 ANK2Q01484 3957 aa6.06□□□□□ -1.44
TCOF1-205ENST00000439160 KRTAP10-4P60372 401 aaPredicted RBP6.06□□□□□ -1.44
TCOF1-205ENST00000439160 PLECQ15149 4684 aaKnown RBP6.05□□□□□ -1.44
TCOF1-205ENST00000439160 KRTAP4-5Q9BYR2 181 aa6.01□□□□□ -1.45
TCOF1-205ENST00000439160 DNAH5Q8TE73 4624 aa6□□□□□ -1.45
TCOF1-205ENST00000439160 DNAH11Q96DT5 4516 aa5.96□□□□□ -1.46
TCOF1-205ENST00000439160 DNAH1Q9P2D7 4330 aa5.93□□□□□ -1.46
TCOF1-205ENST00000439160 KRTAP12-2P59991 146 aa5.92□□□□□ -1.46
TCOF1-205ENST00000439160 PP632Q6XCG6 107 aa5.9□□□□□ -1.47
TCOF1-205ENST00000439160 DNAH10Q8IVF4 4471 aa5.9□□□□□ -1.47
TCOF1-205ENST00000439160 STARD9Q9P2P6 4700 aa5.87□□□□□ -1.47
TCOF1-205ENST00000439160 LYSTQ99698 3801 aa5.87□□□□□ -1.47
TCOF1-205ENST00000439160 KRTAP10-6P60371 365 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms