RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 IGLV5-48A0A075B6I7 105 aa5.03□□□□□ -1.6
TMEM39A-202ENST00000438581 Q96NJ1 140 aa5.02□□□□□ -1.61
TMEM39A-202ENST00000438581 COA5Q86WW8 74 aa5.02□□□□□ -1.61
TMEM39A-202ENST00000438581 LINC00304Q8N9R0 145 aa5.02□□□□□ -1.61
TMEM39A-202ENST00000438581 PRAC1Q96KF2 57 aa5.02□□□□□ -1.61
TMEM39A-202ENST00000438581 IGLV8-61A0A075B6I0 122 aa5.01□□□□□ -1.61
TMEM39A-202ENST00000438581 PANO1I0J062 215 aa5.01□□□□□ -1.61
TMEM39A-202ENST00000438581 DSCR10P59022 87 aa5.01□□□□□ -1.61
TMEM39A-202ENST00000438581 KRTAP10-2P60368 255 aa5.01□□□□□ -1.61
TMEM39A-202ENST00000438581 TP53AIP1Q9HCN2 124 aa5.01□□□□□ -1.61
TMEM39A-202ENST00000438581 SPRR1AP35321 89 aa5□□□□□ -1.61
TMEM39A-202ENST00000438581 C8orf17Q9NRJ1 99 aa5□□□□□ -1.61
TMEM39A-202ENST00000438581 PLAC8Q9NZF1 115 aa5□□□□□ -1.61
TMEM39A-202ENST00000438581 MRPL34Q9BQ48 92 aaKnown RBP4.99□□□□□ -1.61
TMEM39A-202ENST00000438581 FLG2Q5D862 2391 aaPredicted RBP4.98□□□□□ -1.61
TMEM39A-202ENST00000438581 TENM2Q9NT68 2774 aa4.98□□□□□ -1.61
TMEM39A-202ENST00000438581 C9orf92A6NGG3 77 aa4.97□□□□□ -1.61
TMEM39A-202ENST00000438581 A0A1B0GVX0 72 aa4.97□□□□□ -1.61
TMEM39A-202ENST00000438581 KRTAP10-1P60331 282 aa4.97□□□□□ -1.61
TMEM39A-202ENST00000438581 Q6ZR54 194 aa4.97□□□□□ -1.61
TMEM39A-202ENST00000438581 CSAG1Q6PB30 78 aa4.97□□□□□ -1.61
TMEM39A-202ENST00000438581 TGP01266 2768 aa4.96□□□□□ -1.62
TMEM39A-202ENST00000438581 IGLV7-46A0A075B6I9 117 aa4.95□□□□□ -1.62
TMEM39A-202ENST00000438581 A0A1B0GU69 56 aa4.94□□□□□ -1.62
TMEM39A-202ENST00000438581 SPATA8Q6RVD6 105 aa4.94□□□□□ -1.62
TMEM39A-202ENST00000438581 KRTAP25-1Q3LHN0 102 aa4.92□□□□□ -1.62
TMEM39A-202ENST00000438581 ZNF469Q96JG9 3925 aaPredicted RBP4.92□□□□□ -1.62
TMEM39A-202ENST00000438581 Q6ZRN7 208 aaPredicted RBP4.92□□□□□ -1.62
TMEM39A-202ENST00000438581 AKAP9Q99996 3911 aa4.91□□□□□ -1.62
TMEM39A-202ENST00000438581 KRTAP4-16G5E9R7 235 aaPredicted RBP4.9□□□□□ -1.63
TMEM39A-202ENST00000438581 KRTAP11-1Q8IUC1 163 aa4.9□□□□□ -1.63
TMEM39A-202ENST00000438581 ACYP2P14621 99 aa4.88□□□□□ -1.63
TMEM39A-202ENST00000438581 SPRR1BP22528 89 aa4.88□□□□□ -1.63
TMEM39A-202ENST00000438581 KRTAP7-1Q8IUC3 87 aa4.88□□□□□ -1.63
TMEM39A-202ENST00000438581 C20orf166-AS1Q96NR2 134 aa4.88□□□□□ -1.63
TMEM39A-202ENST00000438581 LINC00483Q53H64 154 aa4.86□□□□□ -1.63
TMEM39A-202ENST00000438581 KRTAP21-3Q3LHN1 58 aa4.86□□□□□ -1.63
TMEM39A-202ENST00000438581 SPINK7P58062 85 aa4.86□□□□□ -1.63
TMEM39A-202ENST00000438581 SPINT4Q6UDR6 99 aa4.84□□□□□ -1.63
TMEM39A-202ENST00000438581 KRTAP3-3Q9BYR6 98 aa4.84□□□□□ -1.63
TMEM39A-202ENST00000438581 KRTAP3-2Q9BYR7 98 aa4.84□□□□□ -1.63
TMEM39A-202ENST00000438581 TRRAPQ9Y4A5 3859 aa4.83□□□□□ -1.64
TMEM39A-202ENST00000438581 A8MU10 97 aa4.83□□□□□ -1.64
TMEM39A-202ENST00000438581 LINC00472Q9H8W2 130 aa4.82□□□□□ -1.64
TMEM39A-202ENST00000438581 Q5VSD8 79 aa4.82□□□□□ -1.64
TMEM39A-202ENST00000438581 MMP24-AS1A0A0U1RRL7 71 aa4.8□□□□□ -1.64
TMEM39A-202ENST00000438581 SRRM2Q9UQ35 2752 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-202ENST00000438581 Q8N1X5 172 aa4.79□□□□□ -1.64
TMEM39A-202ENST00000438581 ANK3Q12955 4377 aaKnown RBP4.78□□□□□ -1.64
TMEM39A-202ENST00000438581 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
TMEM39A-202ENST00000438581 COX6B2Q6YFQ2 88 aa4.76□□□□□ -1.65
TMEM39A-202ENST00000438581 ADM2Q7Z4H4 148 aa4.75□□□□□ -1.65
TMEM39A-202ENST00000438581 Q5W150 140 aa4.72□□□□□ -1.65
TMEM39A-202ENST00000438581 KRTAP13-1Q8IUC0 172 aa4.71□□□□□ -1.66
TMEM39A-202ENST00000438581 NDUFAF8A1L188 74 aa4.7□□□□□ -1.66
TMEM39A-202ENST00000438581 HRES1P13985 223 aa4.7□□□□□ -1.66
TMEM39A-202ENST00000438581 LCE2DQ5TA82 110 aaPredicted RBP4.7□□□□□ -1.66
TMEM39A-202ENST00000438581 Q6ZSA8 131 aa4.69□□□□□ -1.66
TMEM39A-202ENST00000438581 KRTAP13-2Q52LG2 175 aa4.69□□□□□ -1.66
TMEM39A-202ENST00000438581 FBN3Q75N90 2809 aa4.66□□□□□ -1.66
TMEM39A-202ENST00000438581 A8MUU9 505 aa4.66□□□□□ -1.66
TMEM39A-202ENST00000438581 COL7A1Q02388 2944 aa4.65□□□□□ -1.67
TMEM39A-202ENST00000438581 KRTAP29-1A8MX34 341 aaPredicted RBP4.65□□□□□ -1.67
TMEM39A-202ENST00000438581 P0C880 135 aa4.61□□□□□ -1.67
TMEM39A-202ENST00000438581 A0A1B0GU33 70 aa4.6□□□□□ -1.67
TMEM39A-202ENST00000438581 CRIPTQ9P021 101 aa4.6□□□□□ -1.67
TMEM39A-202ENST00000438581 MEGF8Q7Z7M0 2845 aa4.57□□□□□ -1.68
TMEM39A-202ENST00000438581 A0A0D9SG42 100 aa4.56□□□□□ -1.68
TMEM39A-202ENST00000438581 KRTAP1-4P0C5Y4 121 aa4.55□□□□□ -1.68
TMEM39A-202ENST00000438581 M0R2T5 61 aa4.52□□□□□ -1.69
TMEM39A-202ENST00000438581 RPS29P62273 56 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-202ENST00000438581 KRTAP15-1Q3LI76 137 aa4.49□□□□□ -1.69
TMEM39A-202ENST00000438581 S4R3F8 94 aa4.49□□□□□ -1.69
TMEM39A-202ENST00000438581 ANK2Q01484 3957 aa4.48□□□□□ -1.69
TMEM39A-202ENST00000438581 A0A1B0GVY2 172 aa4.44□□□□□ -1.7
TMEM39A-202ENST00000438581 PRO2289Q9P1D8 64 aa4.42□□□□□ -1.7
TMEM39A-202ENST00000438581 RPL37P61927 97 aaKnown RBP4.41□□□□□ -1.7
TMEM39A-202ENST00000438581 R4GN34 69 aa4.38□□□□□ -1.71
TMEM39A-202ENST00000438581 CSMD3Q7Z407 3707 aa4.38□□□□□ -1.71
TMEM39A-202ENST00000438581 HUWE1Q7Z6Z7 4374 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-202ENST00000438581 DNHD1Q96M86 4753 aa4.35□□□□□ -1.71
TMEM39A-202ENST00000438581 XP32Q5T750 250 aa4.35□□□□□ -1.71
TMEM39A-202ENST00000438581 PLAC4Q8WY50 150 aa4.34□□□□□ -1.71
TMEM39A-202ENST00000438581 H1FX-AS1Q4G0G2 97 aa4.34□□□□□ -1.71
TMEM39A-202ENST00000438581 CMYA5Q8N3K9 4069 aa4.33□□□□□ -1.72
TMEM39A-202ENST00000438581 LYSTQ99698 3801 aa4.32□□□□□ -1.72
TMEM39A-202ENST00000438581 M0QZ58 72 aa4.32□□□□□ -1.72
TMEM39A-202ENST00000438581 INE1O15225 51 aa4.31□□□□□ -1.72
TMEM39A-202ENST00000438581 KRTAP10-8P60410 259 aa4.31□□□□□ -1.72
TMEM39A-202ENST00000438581 DNAH9Q9NYC9 4486 aa4.27□□□□□ -1.73
TMEM39A-202ENST00000438581 KRTAP13-3Q3SY46 172 aa4.26□□□□□ -1.73
TMEM39A-202ENST00000438581 TPRXLQ17RH7 258 aa4.25□□□□□ -1.73
TMEM39A-202ENST00000438581 PLECQ15149 4684 aaKnown RBP4.19□□□□□ -1.74
TMEM39A-202ENST00000438581 DNAH7Q8WXX0 4024 aa4.18□□□□□ -1.74
TMEM39A-202ENST00000438581 DNAH10Q8IVF4 4471 aa4.17□□□□□ -1.74
TMEM39A-202ENST00000438581 DNAH3Q8TD57 4116 aa4.16□□□□□ -1.74
TMEM39A-202ENST00000438581 H0YAA0 97 aa4.16□□□□□ -1.74
TMEM39A-202ENST00000438581 PP632Q6XCG6 107 aa4.15□□□□□ -1.74
TMEM39A-202ENST00000438581 KRTAP4-5Q9BYR2 181 aa4.12□□□□□ -1.75
TMEM39A-202ENST00000438581 PRKDCP78527 4128 aaKnown RBP4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms