RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 CDK2AP2O75956 126 aa12.7□□□□□ -0.38
USP48-205ENST00000421625 LINC00483Q53H64 154 aa12.7□□□□□ -0.38
USP48-205ENST00000421625 WWC2-AS2Q96NR7 200 aa12.67□□□□□ -0.38
USP48-205ENST00000421625 PLECQ15149 4684 aaKnown RBP12.67□□□□□ -0.38
USP48-205ENST00000421625 SPACA4Q8TDM5 124 aa12.65□□□□□ -0.38
USP48-205ENST00000421625 PRR26Q8N8Z3 221 aa12.64□□□□□ -0.39
USP48-205ENST00000421625 FRAS1Q86XX4 4008 aa12.63□□□□□ -0.39
USP48-205ENST00000421625 Q5W150 140 aa12.62□□□□□ -0.39
USP48-205ENST00000421625 Q6ZRN7 208 aaPredicted RBP12.61□□□□□ -0.39
USP48-205ENST00000421625 DNAH8Q96JB1 4490 aa12.61□□□□□ -0.39
USP48-205ENST00000421625 DYNC2H1Q8NCM8 4307 aaKnown RBP12.61□□□□□ -0.39
USP48-205ENST00000421625 NBDYA0A0U1RRE5 68 aa12.61□□□□□ -0.39
USP48-205ENST00000421625 STARD9Q9P2P6 4700 aa12.59□□□□□ -0.39
USP48-205ENST00000421625 SPINK6Q6UWN8 80 aa12.58□□□□□ -0.4
USP48-205ENST00000421625 TGP01266 2768 aa12.58□□□□□ -0.4
USP48-205ENST00000421625 PSORS1C2Q9UIG4 136 aa12.57□□□□□ -0.4
USP48-205ENST00000421625 ZNF706Q9Y5V0 76 aaPredicted RBP12.57□□□□□ -0.4
USP48-205ENST00000421625 C4orf48Q5BLP8 95 aa12.57□□□□□ -0.4
USP48-205ENST00000421625 C7orf65Q6ZTY9 151 aa12.57□□□□□ -0.4
USP48-205ENST00000421625 PRAC1Q96KF2 57 aa12.56□□□□□ -0.4
USP48-205ENST00000421625 KRTAP13-3Q3SY46 172 aa12.55□□□□□ -0.4
USP48-205ENST00000421625 IGLV5-52A0A0A0MRZ9 124 aa12.52□□□□□ -0.41
USP48-205ENST00000421625 ALMS1Q8TCU4 4167 aa12.51□□□□□ -0.41
USP48-205ENST00000421625 HECTD4Q9Y4D8 3996 aa12.5□□□□□ -0.41
USP48-205ENST00000421625 C8orf87E5RJ46 101 aa12.5□□□□□ -0.41
USP48-205ENST00000421625 FBN3Q75N90 2809 aa12.49□□□□□ -0.41
USP48-205ENST00000421625 ZNF861PO60384 105 aa12.47□□□□□ -0.41
USP48-205ENST00000421625 ADM2Q7Z4H4 148 aa12.47□□□□□ -0.41
USP48-205ENST00000421625 NUPR2A6NF83 97 aa12.46□□□□□ -0.42
USP48-205ENST00000421625 ACYP2P14621 99 aa12.44□□□□□ -0.42
USP48-205ENST00000421625 A0A087WTM6 91 aa12.43□□□□□ -0.42
USP48-205ENST00000421625 CIRBP-AS1Q8TBR5 109 aa12.42□□□□□ -0.42
USP48-205ENST00000421625 KMT2AQ03164 3969 aa12.41□□□□□ -0.42
USP48-205ENST00000421625 RTL8CO15255 209 aa12.4□□□□□ -0.42
USP48-205ENST00000421625 LINC00313P59037 77 aa12.39□□□□□ -0.43
USP48-205ENST00000421625 DNAH17Q9UFH2 4485 aa12.38□□□□□ -0.43
USP48-205ENST00000421625 RETNLBQ9BQ08 111 aa12.38□□□□□ -0.43
USP48-205ENST00000421625 DMAC1Q96GE9 116 aa12.37□□□□□ -0.43
USP48-205ENST00000421625 VPS13DQ5THJ4 4388 aa12.36□□□□□ -0.43
USP48-205ENST00000421625 H3BS24 57 aa12.34□□□□□ -0.43
USP48-205ENST00000421625 DNAH2Q9P225 4427 aa12.3□□□□□ -0.44
USP48-205ENST00000421625 A0A1B0GU69 56 aa12.29□□□□□ -0.44
USP48-205ENST00000421625 IGLV7-43P04211 117 aa12.28□□□□□ -0.44
USP48-205ENST00000421625 FAM229AH3BQW9 127 aa12.24□□□□□ -0.45
USP48-205ENST00000421625 IGKV2-30P06310 120 aa12.22□□□□□ -0.45
USP48-205ENST00000421625 SPATA8Q6RVD6 105 aa12.19□□□□□ -0.46
USP48-205ENST00000421625 LY6G6CO95867 125 aa12.18□□□□□ -0.46
USP48-205ENST00000421625 SSBP3-AS1Q7Z2R9 100 aa12.18□□□□□ -0.46
USP48-205ENST00000421625 PLA2G1BP04054 148 aaKnown RBP12.15□□□□□ -0.46
USP48-205ENST00000421625 LINC01554Q52M75 96 aa12.14□□□□□ -0.47
USP48-205ENST00000421625 MIR22HGQ0VDD5 57 aa12.13□□□□□ -0.47
USP48-205ENST00000421625 DNAH11Q96DT5 4516 aa12.11□□□□□ -0.47
USP48-205ENST00000421625 DNAH6Q9C0G6 4158 aa12.1□□□□□ -0.47
USP48-205ENST00000421625 KRTAP16-1A8MUX0 517 aa12.1□□□□□ -0.47
USP48-205ENST00000421625 IGKV2D-30A0A075B6S6 120 aa12.09□□□□□ -0.47
USP48-205ENST00000421625 UQCR11O14957 56 aa12.09□□□□□ -0.47
USP48-205ENST00000421625 KRTAP13-2Q52LG2 175 aa12.08□□□□□ -0.48
USP48-205ENST00000421625 C1orf134Q5TEV5 83 aa12.06□□□□□ -0.48
USP48-205ENST00000421625 HYDINQ4G0P3 5121 aa12.01□□□□□ -0.49
USP48-205ENST00000421625 DNAH5Q8TE73 4624 aa11.99□□□□□ -0.49
USP48-205ENST00000421625 KRTAP21-3Q3LHN1 58 aa11.95□□□□□ -0.5
USP48-205ENST00000421625 CSAG1Q6PB30 78 aa11.94□□□□□ -0.5
USP48-205ENST00000421625 SPINK1P00995 79 aa11.92□□□□□ -0.5
USP48-205ENST00000421625 KRTAP10-2P60368 255 aa11.92□□□□□ -0.5
USP48-205ENST00000421625 LRP1BQ9NZR2 4599 aa11.91□□□□□ -0.5
USP48-205ENST00000421625 Q8N1X5 172 aa11.87□□□□□ -0.51
USP48-205ENST00000421625 KRTAP1-4P0C5Y4 121 aa11.83□□□□□ -0.52
USP48-205ENST00000421625 FAT2Q9NYQ8 4349 aa11.78□□□□□ -0.52
USP48-205ENST00000421625 VPS13BQ7Z7G8 4022 aa11.75□□□□□ -0.53
USP48-205ENST00000421625 PKD1P98161 4303 aa11.75□□□□□ -0.53
USP48-205ENST00000421625 KRTAP10-1P60331 282 aa11.75□□□□□ -0.53
USP48-205ENST00000421625 Q6ZSA8 131 aa11.7□□□□□ -0.54
USP48-205ENST00000421625 SACSQ9NZJ4 4579 aa11.69□□□□□ -0.54
USP48-205ENST00000421625 TYMSOSQ8TAI1 123 aa11.68□□□□□ -0.54
USP48-205ENST00000421625 PKHD1P08F94 4074 aa11.68□□□□□ -0.54
USP48-205ENST00000421625 H0YAA0 97 aa11.68□□□□□ -0.54
USP48-205ENST00000421625 FLG2Q5D862 2391 aaPredicted RBP11.67□□□□□ -0.54
USP48-205ENST00000421625 A8MUU9 505 aa11.59□□□□□ -0.55
USP48-205ENST00000421625 LINC00304Q8N9R0 145 aa11.53□□□□□ -0.56
USP48-205ENST00000421625 KRTAP3-1Q9BYR8 98 aa11.52□□□□□ -0.56
USP48-205ENST00000421625 KMT2CQ8NEZ4 4911 aaKnown RBP11.52□□□□□ -0.57
USP48-205ENST00000421625 A0A1B0GU33 70 aa11.51□□□□□ -0.57
USP48-205ENST00000421625 C9orf92A6NGG3 77 aa11.49□□□□□ -0.57
USP48-205ENST00000421625 CRIPTQ9P021 101 aa11.47□□□□□ -0.57
USP48-205ENST00000421625 H1FX-AS1Q4G0G2 97 aa11.45□□□□□ -0.58
USP48-205ENST00000421625 KRTAP25-1Q3LHN0 102 aa11.45□□□□□ -0.58
USP48-205ENST00000421625 DYNC1H1Q14204 4646 aaKnown RBP11.42□□□□□ -0.58
USP48-205ENST00000421625 SMR3BP02814 79 aaPredicted RBP11.39□□□□□ -0.59
USP48-205ENST00000421625 C20orf166-AS1Q96NR2 134 aa11.38□□□□□ -0.59
USP48-205ENST00000421625 RYR2Q92736 4967 aa11.38□□□□□ -0.59
USP48-205ENST00000421625 ROMO1P60602 79 aa11.38□□□□□ -0.59
USP48-205ENST00000421625 RPS29P62273 56 aaKnown RBP11.38□□□□□ -0.59
USP48-205ENST00000421625 FAT1Q14517 4588 aa11.35□□□□□ -0.59
USP48-205ENST00000421625 A0A1B0GVY2 172 aa11.27□□□□□ -0.61
USP48-205ENST00000421625 COX6B2Q6YFQ2 88 aa11.26□□□□□ -0.61
USP48-205ENST00000421625 APOBP04114 4563 aaKnown RBP11.23□□□□□ -0.61
USP48-205ENST00000421625 PKHD1L1Q86WI1 4243 aa11.22□□□□□ -0.61
USP48-205ENST00000421625 P0C880 135 aa11.21□□□□□ -0.61
USP48-205ENST00000421625 K7ERS5 55 aa11.18□□□□□ -0.62
USP48-205ENST00000421625 RYR3Q15413 4870 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms