RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 KRTAP29-1A8MX34 341 aaPredicted RBP7.01□□□□□ -1.29
PTPRF-205ENST00000414879 NBEAL2Q6ZNJ1 2754 aa7.01□□□□□ -1.29
PTPRF-205ENST00000414879 Q75L30 129 aa7□□□□□ -1.29
PTPRF-205ENST00000414879 A0A1B0GU33 70 aa6.99□□□□□ -1.29
PTPRF-205ENST00000414879 S4R3F8 94 aa6.99□□□□□ -1.29
PTPRF-205ENST00000414879 CRYBG3Q68DQ2 2970 aa6.99□□□□□ -1.29
PTPRF-205ENST00000414879 A0A087X002 238 aa6.97□□□□□ -1.29
PTPRF-205ENST00000414879 KRTAP7-1Q8IUC3 87 aa6.97□□□□□ -1.29
PTPRF-205ENST00000414879 DMAC1Q96GE9 116 aa6.96□□□□□ -1.3
PTPRF-205ENST00000414879 AKAP9Q99996 3911 aa6.95□□□□□ -1.3
PTPRF-205ENST00000414879 NIPBLQ6KC79 2804 aaeCLIP6.95□□□□□ -1.3
PTPRF-205ENST00000414879 ZANQ9Y493 2812 aa6.94□□□□□ -1.3
PTPRF-205ENST00000414879 NBPF19A0A087WUL8 3843 aa6.92□□□□□ -1.3
PTPRF-205ENST00000414879 MXRA5Q9NR99 2828 aa6.92□□□□□ -1.3
PTPRF-205ENST00000414879 VPS13CQ709C8 3753 aa6.92□□□□□ -1.3
PTPRF-205ENST00000414879 KRTAP11-1Q8IUC1 163 aa6.91□□□□□ -1.3
PTPRF-205ENST00000414879 STAB2Q8WWQ8 2551 aa6.9□□□□□ -1.3
PTPRF-205ENST00000414879 SPINT4Q6UDR6 99 aa6.9□□□□□ -1.3
PTPRF-205ENST00000414879 KTN1-AS1Q86SY8 53 aa6.9□□□□□ -1.3
PTPRF-205ENST00000414879 M0R2T5 61 aa6.89□□□□□ -1.31
PTPRF-205ENST00000414879 CELSR1Q9NYQ6 3014 aa6.89□□□□□ -1.31
PTPRF-205ENST00000414879 LINC01554Q52M75 96 aa6.88□□□□□ -1.31
PTPRF-205ENST00000414879 ASH1LQ9NR48 2969 aaKnown RBP6.87□□□□□ -1.31
PTPRF-205ENST00000414879 CSMD1Q96PZ7 3565 aa6.86□□□□□ -1.31
PTPRF-205ENST00000414879 A0A0D9SG42 100 aa6.86□□□□□ -1.31
PTPRF-205ENST00000414879 SVEP1Q4LDE5 3571 aa6.85□□□□□ -1.31
PTPRF-205ENST00000414879 LCA10Q71F78 164 aa6.85□□□□□ -1.31
PTPRF-205ENST00000414879 KRTAP13-2Q52LG2 175 aa6.84□□□□□ -1.31
PTPRF-205ENST00000414879 CSMD2Q7Z408 3487 aa6.84□□□□□ -1.31
PTPRF-205ENST00000414879 CAMK2N1Q7Z7J9 78 aa6.83□□□□□ -1.32
PTPRF-205ENST00000414879 OTOGQ6ZRI0 2925 aa6.82□□□□□ -1.32
PTPRF-205ENST00000414879 ZFHX3Q15911 3703 aa6.81□□□□□ -1.32
PTPRF-205ENST00000414879 ZNF469Q96JG9 3925 aaPredicted RBP6.81□□□□□ -1.32
PTPRF-205ENST00000414879 R4GN34 69 aa6.79□□□□□ -1.32
PTPRF-205ENST00000414879 CYSTM1Q9H1C7 97 aa6.79□□□□□ -1.32
PTPRF-205ENST00000414879 NOTCH2NLQ7Z3S9 236 aa6.76□□□□□ -1.33
PTPRF-205ENST00000414879 Q5VV11 94 aa6.76□□□□□ -1.33
PTPRF-205ENST00000414879 RPL37P61927 97 aaKnown RBP6.75□□□□□ -1.33
PTPRF-205ENST00000414879 H1FX-AS1Q4G0G2 97 aa6.75□□□□□ -1.33
PTPRF-205ENST00000414879 A8MUU9 505 aa6.7□□□□□ -1.34
PTPRF-205ENST00000414879 DMBT1Q9UGM3 2413 aaPredicted RBP6.7□□□□□ -1.34
PTPRF-205ENST00000414879 C20orf166-AS1Q96NR2 134 aa6.69□□□□□ -1.34
PTPRF-205ENST00000414879 NF1P21359 2839 aa6.66□□□□□ -1.34
PTPRF-205ENST00000414879 KRTAP1-4P0C5Y4 121 aa6.65□□□□□ -1.34
PTPRF-205ENST00000414879 M0QZ58 72 aa6.63□□□□□ -1.35
PTPRF-205ENST00000414879 CUBNO60494 3623 aa6.61□□□□□ -1.35
PTPRF-205ENST00000414879 ADM2Q7Z4H4 148 aa6.6□□□□□ -1.35
PTPRF-205ENST00000414879 LUZP6Q538Z0 58 aa6.58□□□□□ -1.36
PTPRF-205ENST00000414879 SPATA8Q6RVD6 105 aa6.58□□□□□ -1.36
PTPRF-205ENST00000414879 ROMO1P60602 79 aa6.57□□□□□ -1.36
PTPRF-205ENST00000414879 PLAC4Q8WY50 150 aa6.56□□□□□ -1.36
PTPRF-205ENST00000414879 FLG2Q5D862 2391 aaPredicted RBP6.56□□□□□ -1.36
PTPRF-205ENST00000414879 DNAH3Q8TD57 4116 aa6.54□□□□□ -1.36
PTPRF-205ENST00000414879 TPRXLQ17RH7 258 aa6.53□□□□□ -1.36
PTPRF-205ENST00000414879 TENM1Q9UKZ4 2725 aa6.51□□□□□ -1.37
PTPRF-205ENST00000414879 CMYA5Q8N3K9 4069 aa6.51□□□□□ -1.37
PTPRF-205ENST00000414879 A0A1B0GVY2 172 aa6.49□□□□□ -1.37
PTPRF-205ENST00000414879 ANK2Q01484 3957 aa6.48□□□□□ -1.37
PTPRF-205ENST00000414879 HUWE1Q7Z6Z7 4374 aaKnown RBP6.47□□□□□ -1.37
PTPRF-205ENST00000414879 FBN1P35555 2871 aaKnown RBP6.47□□□□□ -1.37
PTPRF-205ENST00000414879 XP32Q5T750 250 aa6.47□□□□□ -1.37
PTPRF-205ENST00000414879 VWFP04275 2813 aa6.44□□□□□ -1.38
PTPRF-205ENST00000414879 TRRAPQ9Y4A5 3859 aa6.43□□□□□ -1.38
PTPRF-205ENST00000414879 H3BS24 57 aa6.41□□□□□ -1.38
PTPRF-205ENST00000414879 KRTAP16-1A8MUX0 517 aa6.39□□□□□ -1.39
PTPRF-205ENST00000414879 KRTAP10-8P60410 259 aa6.39□□□□□ -1.39
PTPRF-205ENST00000414879 PRAC1Q96KF2 57 aa6.36□□□□□ -1.39
PTPRF-205ENST00000414879 KRTAP13-3Q3SY46 172 aa6.36□□□□□ -1.39
PTPRF-205ENST00000414879 DNAH9Q9NYC9 4486 aa6.35□□□□□ -1.39
PTPRF-205ENST00000414879 TENM3Q9P273 2699 aa6.33□□□□□ -1.4
PTPRF-205ENST00000414879 DYNC2H1Q8NCM8 4307 aaKnown RBP6.31□□□□□ -1.4
PTPRF-205ENST00000414879 TENM2Q9NT68 2774 aa6.28□□□□□ -1.4
PTPRF-205ENST00000414879 A6NN06 94 aa6.27□□□□□ -1.41
PTPRF-205ENST00000414879 ALMS1Q8TCU4 4167 aa6.25□□□□□ -1.41
PTPRF-205ENST00000414879 A8MU10 97 aa6.23□□□□□ -1.41
PTPRF-205ENST00000414879 DNAH1Q9P2D7 4330 aa6.23□□□□□ -1.41
PTPRF-205ENST00000414879 TNP1P09430 55 aa6.21□□□□□ -1.42
PTPRF-205ENST00000414879 KRTAP25-1Q3LHN0 102 aa6.19□□□□□ -1.42
PTPRF-205ENST00000414879 PKD1L1Q8TDX9 2849 aa6.19□□□□□ -1.42
PTPRF-205ENST00000414879 DNAH6Q9C0G6 4158 aa6.17□□□□□ -1.42
PTPRF-205ENST00000414879 A0A0A0MQY5 61 aa6.16□□□□□ -1.42
PTPRF-205ENST00000414879 PP632Q6XCG6 107 aa6.16□□□□□ -1.42
PTPRF-205ENST00000414879 VPS13DQ5THJ4 4388 aa6.14□□□□□ -1.43
PTPRF-205ENST00000414879 DNAH7Q8WXX0 4024 aa6.11□□□□□ -1.43
PTPRF-205ENST00000414879 TGP01266 2768 aa6.09□□□□□ -1.43
PTPRF-205ENST00000414879 PLECQ15149 4684 aaKnown RBP6.09□□□□□ -1.43
PTPRF-205ENST00000414879 PRO2289Q9P1D8 64 aa6.02□□□□□ -1.45
PTPRF-205ENST00000414879 DNAH10Q8IVF4 4471 aa6.02□□□□□ -1.45
PTPRF-205ENST00000414879 H0YAA0 97 aa6.02□□□□□ -1.45
PTPRF-205ENST00000414879 STARD9Q9P2P6 4700 aa6.01□□□□□ -1.45
PTPRF-205ENST00000414879 DNAH17Q9UFH2 4485 aa6.01□□□□□ -1.45
PTPRF-205ENST00000414879 KRTAP10-10P60014 251 aa6□□□□□ -1.45
PTPRF-205ENST00000414879 PRKDCP78527 4128 aaKnown RBP5.99□□□□□ -1.45
PTPRF-205ENST00000414879 DNAH2Q9P225 4427 aa5.95□□□□□ -1.46
PTPRF-205ENST00000414879 MEGF8Q7Z7M0 2845 aa5.94□□□□□ -1.46
PTPRF-205ENST00000414879 FBN3Q75N90 2809 aa5.92□□□□□ -1.46
PTPRF-205ENST00000414879 P0C880 135 aa5.92□□□□□ -1.46
PTPRF-205ENST00000414879 DNAH8Q96JB1 4490 aa5.92□□□□□ -1.46
PTPRF-205ENST00000414879 COL7A1Q02388 2944 aa5.91□□□□□ -1.46
PTPRF-205ENST00000414879 DNHD1Q96M86 4753 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms